HEADER SIGNALING PROTEIN 14-MAR-15 4YR7 TITLE STRUCTURE OF LUXP IN COMPLEX WITH 1-DEOXY-ALPHA-L-XYLULOFURANOSE-1,2- TITLE 2 BORATE COMPND MOL_ID: 1; COMPND 2 MOLECULE: AUTOINDUCER 2-BINDING PERIPLASMIC PROTEIN LUXP; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: UNP RESIDUES 21-365; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: VIBRIO HARVEYI; SOURCE 3 ORGANISM_TAXID: 669; SOURCE 4 GENE: LUXP; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 7 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 8 EXPRESSION_SYSTEM_PLASMID: PGEX4T1 KEYWDS PROTEIN-LIGAND COMPLEX, QUORUM SENSING, SIGNALING PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR M.A.MCDONOUGH,S.SATTIN,B.G.DAVIS REVDAT 3 10-JAN-24 4YR7 1 REMARK REVDAT 2 13-SEP-17 4YR7 1 REMARK SITE ATOM REVDAT 1 23-MAR-16 4YR7 0 JRNL AUTH S.SATTIN,M.A.MCDONOUGH,B.G.DAVIS JRNL TITL DISCOVERY OF GLYCOMIMETIC AGONISTS FROM A PROTOCELL JRNL TITL 2 METABOLISM, PROTO-NATURAL PRODUCT LIBRARIES JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 2.53 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE: 1.8.2_1309) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.53 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 71.85 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.330 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 3 NUMBER OF REFLECTIONS : 28925 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.153 REMARK 3 R VALUE (WORKING SET) : 0.151 REMARK 3 FREE R VALUE : 0.203 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.090 REMARK 3 FREE R VALUE TEST SET COUNT : 1473 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 71.8825 - 5.6336 1.00 2681 121 0.1452 0.1763 REMARK 3 2 5.6336 - 4.4718 1.00 2534 150 0.1173 0.1628 REMARK 3 3 4.4718 - 3.9066 1.00 2518 119 0.1225 0.1604 REMARK 3 4 3.9066 - 3.5494 1.00 2488 137 0.1406 0.2025 REMARK 3 5 3.5494 - 3.2950 1.00 2488 139 0.1646 0.2271 REMARK 3 6 3.2950 - 3.1007 1.00 2475 125 0.1900 0.2586 REMARK 3 7 3.1007 - 2.9454 1.00 2472 124 0.1885 0.2765 REMARK 3 8 2.9454 - 2.8172 1.00 2465 142 0.1847 0.2448 REMARK 3 9 2.8172 - 2.7087 1.00 2451 131 0.1975 0.2742 REMARK 3 10 2.7087 - 2.6153 1.00 2433 156 0.2237 0.3130 REMARK 3 11 2.6153 - 2.5335 1.00 2447 129 0.2873 0.3755 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.390 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 21.910 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.010 5603 REMARK 3 ANGLE : 1.260 7618 REMARK 3 CHIRALITY : 0.078 825 REMARK 3 PLANARITY : 0.005 990 REMARK 3 DIHEDRAL : 16.048 2048 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 8 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 26 THROUGH 53 ) REMARK 3 ORIGIN FOR THE GROUP (A): 9.9021 -26.4347 24.8928 REMARK 3 T TENSOR REMARK 3 T11: 0.5009 T22: 0.7702 REMARK 3 T33: 0.5941 T12: -0.0474 REMARK 3 T13: -0.0662 T23: 0.0786 REMARK 3 L TENSOR REMARK 3 L11: 8.1533 L22: 2.2249 REMARK 3 L33: 7.8215 L12: 0.1839 REMARK 3 L13: 3.0225 L23: 5.1890 REMARK 3 S TENSOR REMARK 3 S11: 0.0112 S12: -0.4193 S13: 0.0158 REMARK 3 S21: 0.3661 S22: 1.0093 S23: -1.4735 REMARK 3 S31: 0.1930 S32: 1.8035 S33: -1.0637 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 54 THROUGH 112 ) REMARK 3 ORIGIN FOR THE GROUP (A): -9.3741 -35.4512 16.4758 REMARK 3 T TENSOR REMARK 3 T11: 0.2837 T22: 0.3561 REMARK 3 T33: 0.3383 T12: -0.0092 REMARK 3 T13: -0.0450 T23: -0.0199 REMARK 3 L TENSOR REMARK 3 L11: 3.6096 L22: 5.4713 REMARK 3 L33: 5.9087 L12: 1.3292 REMARK 3 L13: -0.9390 L23: -0.0742 REMARK 3 S TENSOR REMARK 3 S11: -0.0530 S12: 0.1021 S13: -0.2994 REMARK 3 S21: -0.0719 S22: 0.1035 S23: 0.2126 REMARK 3 S31: 0.1865 S32: -0.0750 S33: -0.0273 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 113 THROUGH 173 ) REMARK 3 ORIGIN FOR THE GROUP (A): -8.7374 -26.4098 30.8788 REMARK 3 T TENSOR REMARK 3 T11: 0.4660 T22: 0.5110 REMARK 3 T33: 0.3487 T12: -0.0327 REMARK 3 T13: -0.0353 T23: 0.0849 REMARK 3 L TENSOR REMARK 3 L11: 4.5367 L22: 5.6238 REMARK 3 L33: 3.0646 L12: -1.2104 REMARK 3 L13: -1.8047 L23: 1.3116 REMARK 3 S TENSOR REMARK 3 S11: -0.0518 S12: -0.5944 S13: -0.2400 REMARK 3 S21: 0.8823 S22: 0.0179 S23: 0.0390 REMARK 3 S31: -0.0053 S32: 0.2979 S33: -0.0002 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 174 THROUGH 364 ) REMARK 3 ORIGIN FOR THE GROUP (A): -2.0314 -12.9978 10.9167 REMARK 3 T TENSOR REMARK 3 T11: 0.3154 T22: 0.5161 REMARK 3 T33: 0.3271 T12: 0.0072 REMARK 3 T13: 0.0156 T23: 0.0090 REMARK 3 L TENSOR REMARK 3 L11: 0.9000 L22: 6.4103 REMARK 3 L33: 1.0967 L12: -0.0726 REMARK 3 L13: -0.0654 L23: -0.9899 REMARK 3 S TENSOR REMARK 3 S11: 0.0448 S12: 0.1808 S13: -0.0730 REMARK 3 S21: -0.2441 S22: -0.0870 S23: -0.2723 REMARK 3 S31: -0.0665 S32: 0.2545 S33: 0.0504 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 26 THROUGH 53 ) REMARK 3 ORIGIN FOR THE GROUP (A): -29.0996 -72.1531 8.9874 REMARK 3 T TENSOR REMARK 3 T11: 0.6820 T22: 0.6164 REMARK 3 T33: 0.6278 T12: 0.0234 REMARK 3 T13: 0.0578 T23: 0.0263 REMARK 3 L TENSOR REMARK 3 L11: 2.5433 L22: 2.3728 REMARK 3 L33: 2.4390 L12: -0.0230 REMARK 3 L13: 8.4494 L23: 2.8466 REMARK 3 S TENSOR REMARK 3 S11: 0.6948 S12: -0.1973 S13: -0.6142 REMARK 3 S21: 0.2444 S22: -0.0220 S23: -0.0859 REMARK 3 S31: 0.5760 S32: -0.1751 S33: -1.1075 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 54 THROUGH 112 ) REMARK 3 ORIGIN FOR THE GROUP (A): -19.2212 -52.9529 16.5226 REMARK 3 T TENSOR REMARK 3 T11: 0.3965 T22: 0.4107 REMARK 3 T33: 0.6372 T12: -0.0152 REMARK 3 T13: -0.1141 T23: 0.0896 REMARK 3 L TENSOR REMARK 3 L11: 6.7341 L22: 4.0631 REMARK 3 L33: 5.4438 L12: -0.0729 REMARK 3 L13: -1.0835 L23: -0.0699 REMARK 3 S TENSOR REMARK 3 S11: -0.1383 S12: 0.2566 S13: 0.8879 REMARK 3 S21: -0.0405 S22: -0.1828 S23: -0.7745 REMARK 3 S31: -0.1551 S32: 0.3064 S33: 0.3185 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 113 THROUGH 164 ) REMARK 3 ORIGIN FOR THE GROUP (A): -28.4659 -51.8577 3.1038 REMARK 3 T TENSOR REMARK 3 T11: 0.4645 T22: 0.5236 REMARK 3 T33: 0.4930 T12: 0.0061 REMARK 3 T13: -0.0029 T23: 0.1227 REMARK 3 L TENSOR REMARK 3 L11: 4.4942 L22: 4.8919 REMARK 3 L33: 5.0993 L12: -0.1431 REMARK 3 L13: 1.5786 L23: -2.1823 REMARK 3 S TENSOR REMARK 3 S11: -0.1422 S12: 0.7479 S13: 0.6165 REMARK 3 S21: -0.4138 S22: -0.1088 S23: -0.3129 REMARK 3 S31: -0.1706 S32: 0.4837 S33: 0.2455 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 165 THROUGH 365 ) REMARK 3 ORIGIN FOR THE GROUP (A): -41.0119 -59.4851 21.2692 REMARK 3 T TENSOR REMARK 3 T11: 0.4500 T22: 0.2549 REMARK 3 T33: 0.3994 T12: 0.0297 REMARK 3 T13: -0.0787 T23: -0.0035 REMARK 3 L TENSOR REMARK 3 L11: 5.8035 L22: 0.3492 REMARK 3 L33: 1.6107 L12: -0.4446 REMARK 3 L13: -1.3613 L23: -0.0532 REMARK 3 S TENSOR REMARK 3 S11: -0.1734 S12: -0.1647 S13: 0.1691 REMARK 3 S21: 0.1359 S22: 0.0484 S23: -0.1496 REMARK 3 S31: 0.0755 S32: -0.0418 S33: 0.1309 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4YR7 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 14-MAR-15. REMARK 100 THE DEPOSITION ID IS D_1000207900. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 23-OCT-12 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.0 REMARK 200 NUMBER OF CRYSTALS USED : NULL REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : DIAMOND REMARK 200 BEAMLINE : I03 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97630 REMARK 200 MONOCHROMATOR : DOUBLE CRYSTAL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 29003 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.530 REMARK 200 RESOLUTION RANGE LOW (A) : 85.230 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 8.500 REMARK 200 R MERGE (I) : 0.06800 REMARK 200 R SYM (I) : 0.02600 REMARK 200 FOR THE DATA SET : 16.5000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.53 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.60 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 8.50 REMARK 200 R MERGE FOR SHELL (I) : 0.84600 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.700 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 1JX6 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 54.73 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.72 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 12% POLYETHYLENE GLYCOL, 100 MM SODIUM REMARK 280 CACODYLATE, PH 7.0, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE REMARK 280 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 37.22500 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 66.80000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 42.61500 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 66.80000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 37.22500 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 42.61500 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 21 REMARK 465 SER A 22 REMARK 465 MET A 23 REMARK 465 VAL A 24 REMARK 465 LEU A 25 REMARK 465 ASN A 365 REMARK 465 GLY B 21 REMARK 465 SER B 22 REMARK 465 MET B 23 REMARK 465 VAL B 24 REMARK 465 LEU B 25 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ASN A 26 CB CG OD1 ND2 REMARK 470 ARG A 108 CG CD NE CZ NH1 NH2 REMARK 470 LYS A 125 CD CE NZ REMARK 470 LYS A 301 NZ REMARK 470 LYS A 357 NZ REMARK 470 ASN B 26 CB CG OD1 ND2 REMARK 470 LYS B 61 CD CE NZ REMARK 470 GLN B 64 CG CD OE1 NE2 REMARK 470 LYS B 68 CE NZ REMARK 470 GLN B 76 CG CD OE1 NE2 REMARK 470 ARG B 108 CG CD NE CZ NH1 NH2 REMARK 470 LYS B 125 CD CE NZ REMARK 470 LYS B 127 CD CE NZ REMARK 470 ASP B 168 CG OD1 OD2 REMARK 470 LYS B 169 CG CD CE NZ REMARK 470 GLU B 282 CG CD OE1 OE2 REMARK 470 ASN B 365 CG OD1 ND2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OE1 GLN A 64 O HOH A 501 2.14 REMARK 500 OH TYR A 28 OG1 THR A 137 2.16 REMARK 500 O ILE A 98 O HOH A 502 2.17 REMARK 500 NH1 ARG A 358 O HOH A 503 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 112 159.57 -40.78 REMARK 500 HIS A 170 86.54 -154.20 REMARK 500 HIS A 198 6.74 84.74 REMARK 500 PHE A 206 -161.37 -73.38 REMARK 500 ARG A 281 62.19 -106.12 REMARK 500 PRO B 58 151.58 -47.78 REMARK 500 ASN B 110 42.15 70.79 REMARK 500 ASP B 112 161.12 -49.28 REMARK 500 PHE B 206 -165.00 -67.26 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue A1B A 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue A1B B 401 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4YP9 RELATED DB: PDB DBREF 4YR7 A 21 365 UNP P54300 LUXP_VIBHA 21 365 DBREF 4YR7 B 21 365 UNP P54300 LUXP_VIBHA 21 365 SEQADV 4YR7 GLY A 21 UNP P54300 ALA 21 CONFLICT SEQADV 4YR7 SER A 22 UNP P54300 THR 22 CONFLICT SEQADV 4YR7 MET A 23 UNP P54300 GLN 23 CONFLICT SEQADV 4YR7 GLY B 21 UNP P54300 ALA 21 CONFLICT SEQADV 4YR7 SER B 22 UNP P54300 THR 22 CONFLICT SEQADV 4YR7 MET B 23 UNP P54300 GLN 23 CONFLICT SEQRES 1 A 345 GLY SER MET VAL LEU ASN GLY TYR TRP GLY TYR GLN GLU SEQRES 2 A 345 PHE LEU ASP GLU PHE PRO GLU GLN ARG ASN LEU THR ASN SEQRES 3 A 345 ALA LEU SER GLU ALA VAL ARG ALA GLN PRO VAL PRO LEU SEQRES 4 A 345 SER LYS PRO THR GLN ARG PRO ILE LYS ILE SER VAL VAL SEQRES 5 A 345 TYR PRO GLY GLN GLN VAL SER ASP TYR TRP VAL ARG ASN SEQRES 6 A 345 ILE ALA SER PHE GLU LYS ARG LEU TYR LYS LEU ASN ILE SEQRES 7 A 345 ASN TYR GLN LEU ASN GLN VAL PHE THR ARG PRO ASN ALA SEQRES 8 A 345 ASP ILE LYS GLN GLN SER LEU SER LEU MET GLU ALA LEU SEQRES 9 A 345 LYS SER LYS SER ASP TYR LEU ILE PHE THR LEU ASP THR SEQRES 10 A 345 THR ARG HIS ARG LYS PHE VAL GLU HIS VAL LEU ASP SER SEQRES 11 A 345 THR ASN THR LYS LEU ILE LEU GLN ASN ILE THR THR PRO SEQRES 12 A 345 VAL ARG GLU TRP ASP LYS HIS GLN PRO PHE LEU TYR VAL SEQRES 13 A 345 GLY PHE ASP HIS ALA GLU GLY SER ARG GLU LEU ALA THR SEQRES 14 A 345 GLU PHE GLY LYS PHE PHE PRO LYS HIS THR TYR TYR SER SEQRES 15 A 345 VAL LEU TYR PHE SER GLU GLY TYR ILE SER ASP VAL ARG SEQRES 16 A 345 GLY ASP THR PHE ILE HIS GLN VAL ASN ARG ASP ASN ASN SEQRES 17 A 345 PHE GLU LEU GLN SER ALA TYR TYR THR LYS ALA THR LYS SEQRES 18 A 345 GLN SER GLY TYR ASP ALA ALA LYS ALA SER LEU ALA LYS SEQRES 19 A 345 HIS PRO ASP VAL ASP PHE ILE TYR ALA CYS SER THR ASP SEQRES 20 A 345 VAL ALA LEU GLY ALA VAL ASP ALA LEU ALA GLU LEU GLY SEQRES 21 A 345 ARG GLU ASP ILE MET ILE ASN GLY TRP GLY GLY GLY SER SEQRES 22 A 345 ALA GLU LEU ASP ALA ILE GLN LYS GLY ASP LEU ASP ILE SEQRES 23 A 345 THR VAL MET ARG MET ASN ASP ASP THR GLY ILE ALA MET SEQRES 24 A 345 ALA GLU ALA ILE LYS TRP ASP LEU GLU ASP LYS PRO VAL SEQRES 25 A 345 PRO THR VAL TYR SER GLY ASP PHE GLU ILE VAL THR LYS SEQRES 26 A 345 ALA ASP SER PRO GLU ARG ILE GLU ALA LEU LYS LYS ARG SEQRES 27 A 345 ALA PHE ARG TYR SER ASP ASN SEQRES 1 B 345 GLY SER MET VAL LEU ASN GLY TYR TRP GLY TYR GLN GLU SEQRES 2 B 345 PHE LEU ASP GLU PHE PRO GLU GLN ARG ASN LEU THR ASN SEQRES 3 B 345 ALA LEU SER GLU ALA VAL ARG ALA GLN PRO VAL PRO LEU SEQRES 4 B 345 SER LYS PRO THR GLN ARG PRO ILE LYS ILE SER VAL VAL SEQRES 5 B 345 TYR PRO GLY GLN GLN VAL SER ASP TYR TRP VAL ARG ASN SEQRES 6 B 345 ILE ALA SER PHE GLU LYS ARG LEU TYR LYS LEU ASN ILE SEQRES 7 B 345 ASN TYR GLN LEU ASN GLN VAL PHE THR ARG PRO ASN ALA SEQRES 8 B 345 ASP ILE LYS GLN GLN SER LEU SER LEU MET GLU ALA LEU SEQRES 9 B 345 LYS SER LYS SER ASP TYR LEU ILE PHE THR LEU ASP THR SEQRES 10 B 345 THR ARG HIS ARG LYS PHE VAL GLU HIS VAL LEU ASP SER SEQRES 11 B 345 THR ASN THR LYS LEU ILE LEU GLN ASN ILE THR THR PRO SEQRES 12 B 345 VAL ARG GLU TRP ASP LYS HIS GLN PRO PHE LEU TYR VAL SEQRES 13 B 345 GLY PHE ASP HIS ALA GLU GLY SER ARG GLU LEU ALA THR SEQRES 14 B 345 GLU PHE GLY LYS PHE PHE PRO LYS HIS THR TYR TYR SER SEQRES 15 B 345 VAL LEU TYR PHE SER GLU GLY TYR ILE SER ASP VAL ARG SEQRES 16 B 345 GLY ASP THR PHE ILE HIS GLN VAL ASN ARG ASP ASN ASN SEQRES 17 B 345 PHE GLU LEU GLN SER ALA TYR TYR THR LYS ALA THR LYS SEQRES 18 B 345 GLN SER GLY TYR ASP ALA ALA LYS ALA SER LEU ALA LYS SEQRES 19 B 345 HIS PRO ASP VAL ASP PHE ILE TYR ALA CYS SER THR ASP SEQRES 20 B 345 VAL ALA LEU GLY ALA VAL ASP ALA LEU ALA GLU LEU GLY SEQRES 21 B 345 ARG GLU ASP ILE MET ILE ASN GLY TRP GLY GLY GLY SER SEQRES 22 B 345 ALA GLU LEU ASP ALA ILE GLN LYS GLY ASP LEU ASP ILE SEQRES 23 B 345 THR VAL MET ARG MET ASN ASP ASP THR GLY ILE ALA MET SEQRES 24 B 345 ALA GLU ALA ILE LYS TRP ASP LEU GLU ASP LYS PRO VAL SEQRES 25 B 345 PRO THR VAL TYR SER GLY ASP PHE GLU ILE VAL THR LYS SEQRES 26 B 345 ALA ASP SER PRO GLU ARG ILE GLU ALA LEU LYS LYS ARG SEQRES 27 B 345 ALA PHE ARG TYR SER ASP ASN HET A1B A 401 12 HET A1B B 401 12 HETNAM A1B 1-DEOXY-ALPHA-L-XYLULOFURANOSE-1,2-BORATE FORMUL 3 A1B 2(C5 H10 B O6 1-) FORMUL 5 HOH *195(H2 O) HELIX 1 AA1 GLY A 30 PHE A 38 1 9 HELIX 2 AA2 PHE A 38 ALA A 54 1 17 HELIX 3 AA3 ASP A 80 LEU A 96 1 17 HELIX 4 AA4 ASP A 112 SER A 126 1 15 HELIX 5 AA5 HIS A 140 ASP A 149 1 10 HELIX 6 AA6 VAL A 164 HIS A 170 5 7 HELIX 7 AA7 ASP A 179 PHE A 195 1 17 HELIX 8 AA8 GLY A 209 ASN A 228 1 20 HELIX 9 AA9 THR A 240 HIS A 255 1 16 HELIX 10 AB1 SER A 265 GLY A 280 1 16 HELIX 11 AB2 GLY A 292 GLY A 302 1 11 HELIX 12 AB3 ASP A 313 GLU A 328 1 16 HELIX 13 AB4 SER A 348 PHE A 360 1 13 HELIX 14 AB5 GLY B 30 PHE B 38 1 9 HELIX 15 AB6 PHE B 38 ALA B 54 1 17 HELIX 16 AB7 ASP B 80 LEU B 96 1 17 HELIX 17 AB8 ASP B 112 LEU B 124 1 13 HELIX 18 AB9 LYS B 125 LYS B 127 5 3 HELIX 19 AC1 HIS B 140 ASP B 149 1 10 HELIX 20 AC2 VAL B 164 LYS B 169 5 6 HELIX 21 AC3 ASP B 179 PHE B 195 1 17 HELIX 22 AC4 GLY B 209 ASN B 228 1 20 HELIX 23 AC5 THR B 240 HIS B 255 1 16 HELIX 24 AC6 SER B 265 GLY B 280 1 16 HELIX 25 AC7 GLY B 292 GLY B 302 1 11 HELIX 26 AC8 ASP B 313 GLU B 328 1 16 HELIX 27 AC9 SER B 348 PHE B 360 1 13 SHEET 1 AA1 6 TYR A 100 THR A 107 0 SHEET 2 AA1 6 ILE A 67 PRO A 74 1 N ILE A 69 O GLN A 101 SHEET 3 AA1 6 TYR A 130 PHE A 133 1 O ILE A 132 N SER A 70 SHEET 4 AA1 6 LYS A 154 GLN A 158 1 O ILE A 156 N LEU A 131 SHEET 5 AA1 6 LEU A 174 GLY A 177 1 O VAL A 176 N LEU A 157 SHEET 6 AA1 6 VAL A 335 SER A 337 1 O TYR A 336 N GLY A 177 SHEET 1 AA2 4 GLU A 230 TYR A 235 0 SHEET 2 AA2 4 TYR A 200 LEU A 204 1 N TYR A 201 O GLN A 232 SHEET 3 AA2 4 PHE A 260 ALA A 263 1 O TYR A 262 N LEU A 204 SHEET 4 AA2 4 MET A 285 ILE A 286 1 O MET A 285 N ILE A 261 SHEET 1 AA3 2 ILE A 306 ARG A 310 0 SHEET 2 AA3 2 PHE A 340 THR A 344 -1 O VAL A 343 N THR A 307 SHEET 1 AA4 6 TYR B 100 THR B 107 0 SHEET 2 AA4 6 ILE B 67 PRO B 74 1 N ILE B 69 O ASN B 103 SHEET 3 AA4 6 TYR B 130 PHE B 133 1 O TYR B 130 N SER B 70 SHEET 4 AA4 6 LYS B 154 GLN B 158 1 O LYS B 154 N LEU B 131 SHEET 5 AA4 6 LEU B 174 GLY B 177 1 O VAL B 176 N LEU B 157 SHEET 6 AA4 6 VAL B 335 SER B 337 1 O TYR B 336 N TYR B 175 SHEET 1 AA5 4 GLU B 230 TYR B 235 0 SHEET 2 AA5 4 TYR B 200 LEU B 204 1 N TYR B 201 O GLN B 232 SHEET 3 AA5 4 PHE B 260 ALA B 263 1 O TYR B 262 N LEU B 204 SHEET 4 AA5 4 MET B 285 ILE B 286 1 O MET B 285 N ILE B 261 SHEET 1 AA6 2 ILE B 306 ARG B 310 0 SHEET 2 AA6 2 PHE B 340 THR B 344 -1 O GLU B 341 N MET B 309 SITE 1 AC1 10 GLN A 77 SER A 79 TRP A 82 ASN A 159 SITE 2 AC1 10 ARG A 215 SER A 265 THR A 266 TRP A 289 SITE 3 AC1 10 ARG A 310 HOH A 512 SITE 1 AC2 9 SER B 79 TRP B 82 ASN B 159 ARG B 215 SITE 2 AC2 9 SER B 265 THR B 266 TRP B 289 ARG B 310 SITE 3 AC2 9 HOH B 504 CRYST1 74.450 85.230 133.600 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.013432 0.000000 0.000000 0.00000 SCALE2 0.000000 0.011733 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007485 0.00000