HEADER LIGASE/LIGASE INHIBITOR 15-MAR-15 4YRL TITLE CRYSTAL STRUCTURE OF T. CRUZI HISTIDYL-TRNA SYNTHETASE IN COMPLEX WITH TITLE 2 4-(METHYLSULFANYL)ANILINE (CHEM 262) COMPND MOL_ID: 1; COMPND 2 MOLECULE: HISTIDYL-TRNA SYNTHETASE; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: UNP RESIDUES 45-478; COMPND 5 EC: 6.1.1.21; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: TRYPANOSOMA CRUZI (STRAIN CL BRENER); SOURCE 3 ORGANISM_TAXID: 353153; SOURCE 4 STRAIN: CL BRENER; SOURCE 5 GENE: TC00.1047053507019.40; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: AVA0421 KEYWDS LIGASE, AMINOACYL-TRNA SYNTHETASE, AARS, HISRS, TRYPANOSOMA CRUZI, KEYWDS 2 PROTEIN-INHIBITOR COMPLEX, LIGASE-LIGASE INHIBITOR COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR C.-Y.KOH,W.G.J.HOL REVDAT 3 27-SEP-23 4YRL 1 COMPND REMARK HETNAM REVDAT 2 18-APR-18 4YRL 1 COMPND JRNL REMARK HETNAM REVDAT 1 12-AUG-15 4YRL 0 JRNL AUTH C.Y.KOH,L.K.SIDDARAMAIAH,R.M.RANADE,J.NGUYEN,T.JIAN,Z.ZHANG, JRNL AUTH 2 J.R.GILLESPIE,F.S.BUCKNER,C.L.VERLINDE,E.FAN,W.G.HOL JRNL TITL A BINDING HOTSPOT IN TRYPANOSOMA CRUZI HISTIDYL-TRNA JRNL TITL 2 SYNTHETASE REVEALED BY FRAGMENT-BASED CRYSTALLOGRAPHIC JRNL TITL 3 COCKTAIL SCREENS. JRNL REF ACTA CRYSTALLOGR. D BIOL. V. 71 1684 2015 JRNL REF 2 CRYSTALLOGR. JRNL REFN ESSN 1399-0047 JRNL PMID 26249349 JRNL DOI 10.1107/S1399004715007683 REMARK 2 REMARK 2 RESOLUTION. 2.30 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC REFMAC_5.8.0073 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.30 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 28.40 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 96.3 REMARK 3 NUMBER OF REFLECTIONS : 20198 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.201 REMARK 3 R VALUE (WORKING SET) : 0.199 REMARK 3 FREE R VALUE : 0.240 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.200 REMARK 3 FREE R VALUE TEST SET COUNT : 1104 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3145 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 47 REMARK 3 SOLVENT ATOMS : 97 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 59.75 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -3.86000 REMARK 3 B22 (A**2) : 4.36000 REMARK 3 B33 (A**2) : -0.45000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : -0.45000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.325 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.231 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.201 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 16.705 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 DISTANCE RESTRAINTS. RMS SIGMA REMARK 3 BOND LENGTH (A) : NULL ; NULL REMARK 3 ANGLE DISTANCE (A) : NULL ; NULL REMARK 3 INTRAPLANAR 1-4 DISTANCE (A) : NULL ; NULL REMARK 3 H-BOND OR METAL COORDINATION (A) : NULL ; NULL REMARK 3 REMARK 3 PLANE RESTRAINT (A) : NULL ; NULL REMARK 3 CHIRAL-CENTER RESTRAINT (A**3) : NULL ; NULL REMARK 3 REMARK 3 NON-BONDED CONTACT RESTRAINTS. REMARK 3 SINGLE TORSION (A) : NULL ; NULL REMARK 3 MULTIPLE TORSION (A) : NULL ; NULL REMARK 3 H-BOND (X...Y) (A) : NULL ; NULL REMARK 3 H-BOND (X-H...Y) (A) : NULL ; NULL REMARK 3 REMARK 3 CONFORMATIONAL TORSION ANGLE RESTRAINTS. REMARK 3 SPECIFIED (DEGREES) : NULL ; NULL REMARK 3 PLANAR (DEGREES) : NULL ; NULL REMARK 3 STAGGERED (DEGREES) : NULL ; NULL REMARK 3 TRANSVERSE (DEGREES) : NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS U VALUES : WITH TLS ADDED REMARK 4 REMARK 4 4YRL COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 23-MAR-15. REMARK 100 THE DEPOSITION ID IS D_1000207951. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 22-MAR-13 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 4.8 TO 5.3 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : RIGAKU MICROMAX-007 REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.54 REMARK 200 MONOCHROMATOR : VARIMAX HF (OSMIC) REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : RIGAKU SATURN 944 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : AIMLESS 0.1.27 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 21307 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.300 REMARK 200 RESOLUTION RANGE LOW (A) : 29.020 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 96.5 REMARK 200 DATA REDUNDANCY : 2.100 REMARK 200 R MERGE (I) : 0.04800 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 15.1000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.30 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.38 REMARK 200 COMPLETENESS FOR SHELL (%) : 89.2 REMARK 200 DATA REDUNDANCY IN SHELL : 2.00 REMARK 200 R MERGE FOR SHELL (I) : 0.53600 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.900 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: REFMAC REMARK 200 STARTING MODEL: 3LC0 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 50.33 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.48 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.2 M AMMONIUM SULFATE, 23 % TO 28 % REMARK 280 PEG 3350, 0.1 M SODIUM CITRATE PH 4.8 TO 5.3, 1 MM TCEP, VAPOR REMARK 280 DIFFUSION, SITTING DROP, TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: I 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z+1/2 REMARK 290 4555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 30.92110 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 59.32500 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 33.00105 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 30.92110 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 59.32500 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 33.00105 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 10370 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 32640 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -122.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 126.58920 REMARK 350 BIOMT2 2 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 66.00211 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 682 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 694 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A -21 REMARK 465 ALA A -20 REMARK 465 HIS A -19 REMARK 465 HIS A -18 REMARK 465 HIS A -17 REMARK 465 HIS A -16 REMARK 465 HIS A -15 REMARK 465 HIS A -14 REMARK 465 MET A -13 REMARK 465 GLY A -12 REMARK 465 THR A -11 REMARK 465 LEU A -10 REMARK 465 GLU A -9 REMARK 465 ALA A -8 REMARK 465 GLN A -7 REMARK 465 THR A -6 REMARK 465 GLN A -5 REMARK 465 GLY A -4 REMARK 465 PRO A -3 REMARK 465 GLY A -2 REMARK 465 SER A -1 REMARK 465 MET A 0 REMARK 465 GLN A 45 REMARK 465 LYS A 46 REMARK 465 ASN A 47 REMARK 465 ALA A 159 REMARK 465 ILE A 160 REMARK 465 THR A 161 REMARK 465 ARG A 162 REMARK 465 GLY A 163 REMARK 465 GLU A 257 REMARK 465 PRO A 258 REMARK 465 THR A 259 REMARK 465 VAL A 260 REMARK 465 GLU A 457 REMARK 465 GLY A 458 REMARK 465 THR A 459 REMARK 465 GLY A 460 REMARK 465 LYS A 461 REMARK 465 GLU A 462 REMARK 465 GLU A 463 REMARK 465 GLY A 464 REMARK 465 GLY A 465 REMARK 465 ALA A 466 REMARK 465 GLU A 467 REMARK 465 ARG A 468 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLU A 63 CG CD OE1 OE2 REMARK 470 LYS A 116 CG CD CE NZ REMARK 470 ARG A 164 CG CD NE CZ NH1 NH2 REMARK 470 GLU A 220 CG CD OE1 OE2 REMARK 470 LYS A 228 CG CD CE NZ REMARK 470 LYS A 238 CG CD CE NZ REMARK 470 GLU A 240 CG CD OE1 OE2 REMARK 470 LYS A 241 CG CD CE NZ REMARK 470 ILE A 242 CG1 CG2 CD1 REMARK 470 ARG A 244 CG CD NE CZ NH1 NH2 REMARK 470 GLU A 245 CG CD OE1 OE2 REMARK 470 GLU A 246 CG CD OE1 OE2 REMARK 470 VAL A 247 CG1 CG2 REMARK 470 GLU A 248 CG CD OE1 OE2 REMARK 470 GLN A 250 CG CD OE1 NE2 REMARK 470 LEU A 251 CG CD1 CD2 REMARK 470 VAL A 253 CG1 CG2 REMARK 470 LEU A 254 CG CD1 CD2 REMARK 470 LEU A 256 CG CD1 CD2 REMARK 470 VAL A 280 CG1 CG2 REMARK 470 GLU A 283 CG CD OE1 OE2 REMARK 470 LYS A 288 CG CD CE NZ REMARK 470 ARG A 334 CG CD NE CZ NH1 NH2 REMARK 470 LYS A 419 CG CD CE NZ REMARK 470 LYS A 421 CG CD CE NZ REMARK 470 GLU A 443 CG CD OE1 OE2 REMARK 470 PHE A 470 CG CD1 CD2 CE1 CE2 CZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLN A 55 117.25 -39.04 REMARK 500 THR A 225 131.15 -37.87 REMARK 500 ARG A 314 158.40 74.43 REMARK 500 ARG A 334 -179.04 -65.85 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue HIS A 501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue 4JM A 502 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 503 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 504 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 505 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 506 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 507 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue DMS A 508 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4YP0 RELATED DB: PDB REMARK 900 RELATED ID: 4YPF RELATED DB: PDB REMARK 900 RELATED ID: 4YRC RELATED DB: PDB REMARK 900 RELATED ID: 4YRE RELATED DB: PDB REMARK 900 RELATED ID: 4YRF RELATED DB: PDB REMARK 900 RELATED ID: 4YRG RELATED DB: PDB REMARK 900 RELATED ID: 4YRI RELATED DB: PDB REMARK 900 RELATED ID: 4YRJ RELATED DB: PDB REMARK 900 RELATED ID: 4YRK RELATED DB: PDB REMARK 900 RELATED ID: 4YRM RELATED DB: PDB REMARK 900 RELATED ID: 4YRN RELATED DB: PDB REMARK 900 RELATED ID: 4YRO RELATED DB: PDB REMARK 900 RELATED ID: 4YRP RELATED DB: PDB REMARK 900 RELATED ID: 4YRQ RELATED DB: PDB REMARK 900 RELATED ID: 4YRR RELATED DB: PDB REMARK 900 RELATED ID: 4YRS RELATED DB: PDB REMARK 900 RELATED ID: 4YRT RELATED DB: PDB DBREF 4YRL A 45 478 UNP Q4DA54 Q4DA54_TRYCC 45 478 SEQADV 4YRL MET A -21 UNP Q4DA54 INITIATING METHIONINE SEQADV 4YRL ALA A -20 UNP Q4DA54 EXPRESSION TAG SEQADV 4YRL HIS A -19 UNP Q4DA54 EXPRESSION TAG SEQADV 4YRL HIS A -18 UNP Q4DA54 EXPRESSION TAG SEQADV 4YRL HIS A -17 UNP Q4DA54 EXPRESSION TAG SEQADV 4YRL HIS A -16 UNP Q4DA54 EXPRESSION TAG SEQADV 4YRL HIS A -15 UNP Q4DA54 EXPRESSION TAG SEQADV 4YRL HIS A -14 UNP Q4DA54 EXPRESSION TAG SEQADV 4YRL MET A -13 UNP Q4DA54 EXPRESSION TAG SEQADV 4YRL GLY A -12 UNP Q4DA54 EXPRESSION TAG SEQADV 4YRL THR A -11 UNP Q4DA54 EXPRESSION TAG SEQADV 4YRL LEU A -10 UNP Q4DA54 EXPRESSION TAG SEQADV 4YRL GLU A -9 UNP Q4DA54 EXPRESSION TAG SEQADV 4YRL ALA A -8 UNP Q4DA54 EXPRESSION TAG SEQADV 4YRL GLN A -7 UNP Q4DA54 EXPRESSION TAG SEQADV 4YRL THR A -6 UNP Q4DA54 EXPRESSION TAG SEQADV 4YRL GLN A -5 UNP Q4DA54 EXPRESSION TAG SEQADV 4YRL GLY A -4 UNP Q4DA54 EXPRESSION TAG SEQADV 4YRL PRO A -3 UNP Q4DA54 EXPRESSION TAG SEQADV 4YRL GLY A -2 UNP Q4DA54 EXPRESSION TAG SEQADV 4YRL SER A -1 UNP Q4DA54 EXPRESSION TAG SEQADV 4YRL MET A 0 UNP Q4DA54 EXPRESSION TAG SEQRES 1 A 456 MET ALA HIS HIS HIS HIS HIS HIS MET GLY THR LEU GLU SEQRES 2 A 456 ALA GLN THR GLN GLY PRO GLY SER MET GLN LYS ASN MET SEQRES 3 A 456 VAL GLU THR GLU PRO VAL GLN GLY CYS ARG ASP PHE PRO SEQRES 4 A 456 PRO GLU ALA MET ARG CYS ARG ARG HIS LEU PHE ASP VAL SEQRES 5 A 456 PHE HIS ALA THR ALA LYS THR PHE GLY PHE GLU GLU TYR SEQRES 6 A 456 ASP ALA PRO VAL LEU GLU SER GLU GLU LEU TYR ILE ARG SEQRES 7 A 456 LYS ALA GLY GLU GLU ILE THR GLU GLN MET PHE ASN PHE SEQRES 8 A 456 ILE THR LYS GLY GLY HIS ARG VAL ALA LEU ARG PRO GLU SEQRES 9 A 456 MET THR PRO SER LEU ALA ARG LEU LEU LEU GLY LYS GLY SEQRES 10 A 456 ARG SER LEU LEU LEU PRO ALA LYS TRP TYR SER ILE PRO SEQRES 11 A 456 GLN CYS TRP ARG TYR GLU ALA ILE THR ARG GLY ARG ARG SEQRES 12 A 456 ARG GLU HIS TYR GLN TRP ASN MET ASP ILE VAL GLY VAL SEQRES 13 A 456 LYS SER VAL SER ALA GLU VAL GLU LEU VAL CYS ALA ALA SEQRES 14 A 456 CYS TRP ALA MET ARG SER LEU GLY LEU SER SER LYS ASP SEQRES 15 A 456 VAL GLY ILE LYS VAL ASN SER ARG LYS VAL LEU GLN THR SEQRES 16 A 456 VAL VAL GLU GLN ALA GLY VAL THR SER ASP LYS PHE ALA SEQRES 17 A 456 PRO VAL CYS VAL ILE VAL ASP LYS MET GLU LYS ILE PRO SEQRES 18 A 456 ARG GLU GLU VAL GLU ALA GLN LEU ALA VAL LEU GLY LEU SEQRES 19 A 456 GLU PRO THR VAL VAL ASP ALA ILE THR THR THR LEU SER SEQRES 20 A 456 LEU LYS SER ILE ASP GLU ILE ALA GLN ARG VAL GLY GLU SEQRES 21 A 456 GLU HIS GLU ALA VAL LYS GLU LEU ARG GLN PHE PHE GLU SEQRES 22 A 456 GLN VAL GLU ALA TYR GLY TYR GLY ASP TRP VAL LEU PHE SEQRES 23 A 456 ASP ALA SER VAL VAL ARG GLY LEU ALA TYR TYR THR GLY SEQRES 24 A 456 ILE VAL PHE GLU GLY PHE ASP ARG GLU GLY LYS PHE ARG SEQRES 25 A 456 ALA LEU CYS GLY GLY GLY ARG TYR ASP ASN LEU LEU THR SEQRES 26 A 456 THR TYR GLY SER PRO THR PRO ILE PRO CYS ALA GLY PHE SEQRES 27 A 456 GLY PHE GLY ASP CYS VAL ILE VAL GLU LEU LEU GLN GLU SEQRES 28 A 456 LYS ARG LEU LEU PRO ASP ILE PRO HIS VAL VAL ASP ASP SEQRES 29 A 456 VAL VAL ILE PRO PHE ASP GLU SER MET ARG PRO HIS ALA SEQRES 30 A 456 LEU ALA VAL LEU ARG ARG LEU ARG ASP ALA GLY ARG SER SEQRES 31 A 456 ALA ASP ILE ILE LEU ASP LYS LYS LYS VAL VAL GLN ALA SEQRES 32 A 456 PHE ASN TYR ALA ASP ARG VAL GLY ALA VAL ARG ALA VAL SEQRES 33 A 456 LEU VAL ALA PRO GLU GLU TRP GLU ARG GLY GLU VAL GLN SEQRES 34 A 456 VAL LYS MET LEU ARG GLU GLY THR GLY LYS GLU GLU GLY SEQRES 35 A 456 GLY ALA GLU ARG GLY PHE ALA VAL PRO LEU ASP ARG LEU SEQRES 36 A 456 VAL HET HIS A 501 11 HET 4JM A 502 9 HET EDO A 503 4 HET EDO A 504 4 HET SO4 A 505 5 HET SO4 A 506 5 HET SO4 A 507 5 HET DMS A 508 4 HETNAM HIS HISTIDINE HETNAM 4JM 4-(METHYLSULFANYL)ANILINE HETNAM EDO 1,2-ETHANEDIOL HETNAM SO4 SULFATE ION HETNAM DMS DIMETHYL SULFOXIDE HETSYN EDO ETHYLENE GLYCOL FORMUL 2 HIS C6 H10 N3 O2 1+ FORMUL 3 4JM C7 H9 N S FORMUL 4 EDO 2(C2 H6 O2) FORMUL 6 SO4 3(O4 S 2-) FORMUL 9 DMS C2 H6 O S FORMUL 10 HOH *97(H2 O) HELIX 1 AA1 PRO A 61 GLY A 83 1 23 HELIX 2 AA2 GLU A 96 ILE A 99 5 4 HELIX 3 AA3 GLU A 104 GLN A 109 1 6 HELIX 4 AA4 MET A 127 GLY A 139 1 13 HELIX 5 AA5 ARG A 140 LEU A 142 5 3 HELIX 6 AA6 VAL A 181 LEU A 198 1 18 HELIX 7 AA7 ARG A 212 ALA A 222 1 11 HELIX 8 AA8 THR A 225 ASP A 227 5 3 HELIX 9 AA9 LYS A 228 MET A 239 1 12 HELIX 10 AB1 PRO A 243 LEU A 254 1 12 HELIX 11 AB2 ASP A 262 SER A 269 1 8 HELIX 12 AB3 SER A 272 GLY A 281 1 10 HELIX 13 AB4 HIS A 284 GLY A 301 1 18 HELIX 14 AB5 TYR A 302 ASP A 304 5 3 HELIX 15 AB6 ASN A 344 TYR A 349 1 6 HELIX 16 AB7 CYS A 365 LYS A 374 1 10 HELIX 17 AB8 ASP A 392 SER A 394 5 3 HELIX 18 AB9 MET A 395 ALA A 409 1 15 HELIX 19 AC1 LYS A 421 VAL A 432 1 12 HELIX 20 AC2 ALA A 441 ARG A 447 1 7 HELIX 21 AC3 ASP A 475 LEU A 477 5 3 SHEET 1 AA1 4 GLU A 85 GLU A 86 0 SHEET 2 AA1 4 ALA A 146 SER A 150 1 O LYS A 147 N GLU A 85 SHEET 3 AA1 4 GLU A 167 VAL A 176 -1 O ASN A 172 N SER A 150 SHEET 4 AA1 4 GLN A 153 TRP A 155 -1 N CYS A 154 O HIS A 168 SHEET 1 AA2 8 GLU A 85 GLU A 86 0 SHEET 2 AA2 8 ALA A 146 SER A 150 1 O LYS A 147 N GLU A 85 SHEET 3 AA2 8 GLU A 167 VAL A 176 -1 O ASN A 172 N SER A 150 SHEET 4 AA2 8 CYS A 357 GLY A 363 -1 O ALA A 358 N ILE A 175 SHEET 5 AA2 8 CYS A 337 ARG A 341 -1 N GLY A 338 O GLY A 361 SHEET 6 AA2 8 ILE A 322 ASP A 328 -1 N ILE A 322 O ARG A 341 SHEET 7 AA2 8 VAL A 205 SER A 211 -1 N ASN A 210 O VAL A 323 SHEET 8 AA2 8 VAL A 306 PHE A 308 1 O LEU A 307 N VAL A 209 SHEET 1 AA3 3 LEU A 92 SER A 94 0 SHEET 2 AA3 3 ARG A 120 LEU A 123 -1 O ALA A 122 N GLU A 93 SHEET 3 AA3 3 PHE A 111 ILE A 114 -1 N PHE A 113 O VAL A 121 SHEET 1 AA4 5 ALA A 413 ILE A 415 0 SHEET 2 AA4 5 VAL A 384 PRO A 390 1 N VAL A 388 O ASP A 414 SHEET 3 AA4 5 ALA A 434 VAL A 440 1 O VAL A 440 N ILE A 389 SHEET 4 AA4 5 GLU A 449 MET A 454 -1 O GLN A 451 N LEU A 439 SHEET 5 AA4 5 ALA A 471 PRO A 473 -1 O VAL A 472 N VAL A 450 SSBOND 1 SO4 A 505 SO4 A 505 1555 2756 2.14 CISPEP 1 LEU A 144 PRO A 145 0 3.01 SITE 1 AC1 15 GLU A 126 THR A 128 GLN A 170 ASP A 174 SITE 2 AC1 15 LEU A 316 TYR A 318 TYR A 319 GLY A 338 SITE 3 AC1 15 TYR A 342 GLY A 359 PHE A 360 GLY A 361 SITE 4 AC1 15 HOH A 627 HOH A 635 HOH A 648 SITE 1 AC2 5 PRO A 125 TRP A 155 ARG A 156 GLU A 167 SITE 2 AC2 5 HIS A 168 SITE 1 AC3 6 GLU A 96 LEU A 97 ILE A 99 ARG A 100 SITE 2 AC3 6 TYR A 349 HOH A 605 SITE 1 AC4 3 THR A 115 TYR A 157 ARG A 166 SITE 1 AC5 2 ARG A 69 HIS A 76 SITE 1 AC6 5 HIS A 168 GLY A 363 ASP A 364 CYS A 365 SITE 2 AC6 5 VAL A 366 SITE 1 AC7 4 ARG A 196 SER A 201 SER A 202 TRP A 305 SITE 1 AC8 3 ARG A 196 SER A 197 TYR A 302 CRYST1 64.747 118.650 66.066 90.00 92.52 90.00 I 1 2 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.015445 0.000000 0.000680 0.00000 SCALE2 0.000000 0.008428 0.000000 0.00000 SCALE3 0.000000 0.000000 0.015151 0.00000