HEADER IMMUNE SYSTEM 16-MAR-15 4YS4 TITLE CRYSTAL STRUCTURE OF PF41 TANDEM 6-CYS DOMAINS FROM PLASMODIUM TITLE 2 FALCIPARUM COMPND MOL_ID: 1; COMPND 2 MOLECULE: MEROZOITE SURFACE PROTEIN P41; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: 6-CYS 1 AND 2 DOMAINS, RESIDUES 21-378; COMPND 5 ENGINEERED: YES; COMPND 6 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: PLASMODIUM FALCIPARUM; SOURCE 3 ORGANISM_TAXID: 36329; SOURCE 4 STRAIN: ISOLATE 3D7; SOURCE 5 GENE: PF41, PFD0240C; SOURCE 6 EXPRESSION_SYSTEM: TRICHOPLUSIA NI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 7111; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: BACULOVIRUS; SOURCE 9 EXPRESSION_SYSTEM_VECTOR: PACGP67B KEYWDS ANTIGENS, IMMUNE SYSTEM EXPDTA X-RAY DIFFRACTION AUTHOR M.L.PARKER,F.PENG,M.J.BOULANGER REVDAT 3 08-JAN-20 4YS4 1 REMARK REVDAT 2 20-SEP-17 4YS4 1 REMARK REVDAT 1 14-OCT-15 4YS4 0 JRNL AUTH M.L.PARKER,F.PENG,M.J.BOULANGER JRNL TITL THE STRUCTURE OF PLASMODIUM FALCIPARUM BLOOD-STAGE 6-CYS JRNL TITL 2 PROTEIN PF41 REVEALS AN UNEXPECTED INTRA-DOMAIN INSERTION JRNL TITL 3 REQUIRED FOR PF12 COORDINATION. JRNL REF PLOS ONE V. 10 39407 2015 JRNL REFN ESSN 1932-6203 JRNL PMID 26414347 JRNL DOI 10.1371/JOURNAL.PONE.0139407 REMARK 2 REMARK 2 RESOLUTION. 2.45 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.45 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 42.30 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.350 REMARK 3 COMPLETENESS FOR RANGE (%) : 98.9 REMARK 3 NUMBER OF REFLECTIONS : 14637 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.184 REMARK 3 R VALUE (WORKING SET) : 0.182 REMARK 3 FREE R VALUE : 0.228 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.760 REMARK 3 FREE R VALUE TEST SET COUNT : 696 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 42.3049 - 4.1889 1.00 2894 148 0.1496 0.1812 REMARK 3 2 4.1889 - 3.3252 1.00 2819 139 0.1724 0.2171 REMARK 3 3 3.3252 - 2.9050 1.00 2795 142 0.2161 0.2825 REMARK 3 4 2.9050 - 2.6395 1.00 2795 125 0.2378 0.3096 REMARK 3 5 2.6395 - 2.4500 0.95 2638 142 0.2479 0.3041 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.280 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 24.370 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 44.70 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 48.86 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.003 2142 REMARK 3 ANGLE : 0.746 2881 REMARK 3 CHIRALITY : 0.031 313 REMARK 3 PLANARITY : 0.003 372 REMARK 3 DIHEDRAL : 13.703 798 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4YS4 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 17-MAR-15. REMARK 100 THE DEPOSITION ID IS D_1000207963. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 26-MAR-14 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRL REMARK 200 BEAMLINE : BL12-2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9795 REMARK 200 MONOCHROMATOR : LIQUID NITROGEN-COOLED DOUBLE REMARK 200 CRYSTAL, NON FIXED EXIT SLIT REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 14643 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.450 REMARK 200 RESOLUTION RANGE LOW (A) : 47.290 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.0 REMARK 200 DATA REDUNDANCY : 10.20 REMARK 200 R MERGE (I) : 0.07800 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 18.2000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.45 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.57 REMARK 200 COMPLETENESS FOR SHELL (%) : 92.8 REMARK 200 DATA REDUNDANCY IN SHELL : 6.50 REMARK 200 R MERGE FOR SHELL (I) : 0.57300 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 3.000 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: PHENIX REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 64.00 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.41 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.01 M ZINC CHLORIDE, 0.1 M MES BUFFER REMARK 280 PH 6.0, 20% PEG6000, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE REMARK 280 291K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: I 2 3 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X,Y,-Z REMARK 290 4555 X,-Y,-Z REMARK 290 5555 Z,X,Y REMARK 290 6555 Z,-X,-Y REMARK 290 7555 -Z,-X,Y REMARK 290 8555 -Z,X,-Y REMARK 290 9555 Y,Z,X REMARK 290 10555 -Y,Z,-X REMARK 290 11555 Y,-Z,-X REMARK 290 12555 -Y,-Z,X REMARK 290 13555 X+1/2,Y+1/2,Z+1/2 REMARK 290 14555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 15555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 16555 X+1/2,-Y+1/2,-Z+1/2 REMARK 290 17555 Z+1/2,X+1/2,Y+1/2 REMARK 290 18555 Z+1/2,-X+1/2,-Y+1/2 REMARK 290 19555 -Z+1/2,-X+1/2,Y+1/2 REMARK 290 20555 -Z+1/2,X+1/2,-Y+1/2 REMARK 290 21555 Y+1/2,Z+1/2,X+1/2 REMARK 290 22555 -Y+1/2,Z+1/2,-X+1/2 REMARK 290 23555 Y+1/2,-Z+1/2,-X+1/2 REMARK 290 24555 -Y+1/2,-Z+1/2,X+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY2 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY1 6 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY2 6 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY1 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY2 7 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY2 8 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY1 9 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 9 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY3 9 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY1 10 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 10 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY3 10 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY1 11 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 11 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY3 11 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY1 12 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 12 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY3 12 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY1 13 1.000000 0.000000 0.000000 66.88000 REMARK 290 SMTRY2 13 0.000000 1.000000 0.000000 66.88000 REMARK 290 SMTRY3 13 0.000000 0.000000 1.000000 66.88000 REMARK 290 SMTRY1 14 -1.000000 0.000000 0.000000 66.88000 REMARK 290 SMTRY2 14 0.000000 -1.000000 0.000000 66.88000 REMARK 290 SMTRY3 14 0.000000 0.000000 1.000000 66.88000 REMARK 290 SMTRY1 15 -1.000000 0.000000 0.000000 66.88000 REMARK 290 SMTRY2 15 0.000000 1.000000 0.000000 66.88000 REMARK 290 SMTRY3 15 0.000000 0.000000 -1.000000 66.88000 REMARK 290 SMTRY1 16 1.000000 0.000000 0.000000 66.88000 REMARK 290 SMTRY2 16 0.000000 -1.000000 0.000000 66.88000 REMARK 290 SMTRY3 16 0.000000 0.000000 -1.000000 66.88000 REMARK 290 SMTRY1 17 0.000000 0.000000 1.000000 66.88000 REMARK 290 SMTRY2 17 1.000000 0.000000 0.000000 66.88000 REMARK 290 SMTRY3 17 0.000000 1.000000 0.000000 66.88000 REMARK 290 SMTRY1 18 0.000000 0.000000 1.000000 66.88000 REMARK 290 SMTRY2 18 -1.000000 0.000000 0.000000 66.88000 REMARK 290 SMTRY3 18 0.000000 -1.000000 0.000000 66.88000 REMARK 290 SMTRY1 19 0.000000 0.000000 -1.000000 66.88000 REMARK 290 SMTRY2 19 -1.000000 0.000000 0.000000 66.88000 REMARK 290 SMTRY3 19 0.000000 1.000000 0.000000 66.88000 REMARK 290 SMTRY1 20 0.000000 0.000000 -1.000000 66.88000 REMARK 290 SMTRY2 20 1.000000 0.000000 0.000000 66.88000 REMARK 290 SMTRY3 20 0.000000 -1.000000 0.000000 66.88000 REMARK 290 SMTRY1 21 0.000000 1.000000 0.000000 66.88000 REMARK 290 SMTRY2 21 0.000000 0.000000 1.000000 66.88000 REMARK 290 SMTRY3 21 1.000000 0.000000 0.000000 66.88000 REMARK 290 SMTRY1 22 0.000000 -1.000000 0.000000 66.88000 REMARK 290 SMTRY2 22 0.000000 0.000000 1.000000 66.88000 REMARK 290 SMTRY3 22 -1.000000 0.000000 0.000000 66.88000 REMARK 290 SMTRY1 23 0.000000 1.000000 0.000000 66.88000 REMARK 290 SMTRY2 23 0.000000 0.000000 -1.000000 66.88000 REMARK 290 SMTRY3 23 -1.000000 0.000000 0.000000 66.88000 REMARK 290 SMTRY1 24 0.000000 -1.000000 0.000000 66.88000 REMARK 290 SMTRY2 24 0.000000 0.000000 -1.000000 66.88000 REMARK 290 SMTRY3 24 1.000000 0.000000 0.000000 66.88000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 552 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 17 REMARK 465 SER A 18 REMARK 465 LYS A 59 REMARK 465 ILE A 60 REMARK 465 ASP A 61 REMARK 465 SER A 62 REMARK 465 GLU A 138 REMARK 465 ALA A 139 REMARK 465 ASP A 140 REMARK 465 VAL A 141 REMARK 465 MET A 142 REMARK 465 LYS A 143 REMARK 465 HIS A 144 REMARK 465 LEU A 145 REMARK 465 LYS A 146 REMARK 465 GLY A 147 REMARK 465 GLY A 148 REMARK 465 ASN A 149 REMARK 465 VAL A 150 REMARK 465 ALA A 151 REMARK 465 GLU A 152 REMARK 465 ALA A 153 REMARK 465 GLN A 154 REMARK 465 ALA A 155 REMARK 465 ASP A 156 REMARK 465 GLU A 157 REMARK 465 TYR A 158 REMARK 465 LEU A 159 REMARK 465 ASN A 160 REMARK 465 LYS A 161 REMARK 465 ALA A 162 REMARK 465 LEU A 163 REMARK 465 ASN A 164 REMARK 465 ARG A 165 REMARK 465 PHE A 166 REMARK 465 LYS A 167 REMARK 465 LYS A 168 REMARK 465 MET A 169 REMARK 465 LYS A 170 REMARK 465 ASP A 171 REMARK 465 LEU A 172 REMARK 465 SER A 173 REMARK 465 LYS A 174 REMARK 465 PHE A 175 REMARK 465 PHE A 176 REMARK 465 ASN A 177 REMARK 465 ASP A 178 REMARK 465 GLN A 179 REMARK 465 ALA A 180 REMARK 465 ASP A 181 REMARK 465 ASN A 182 REMARK 465 THR A 183 REMARK 465 ALA A 184 REMARK 465 LYS A 185 REMARK 465 LEU A 186 REMARK 465 ASN A 187 REMARK 465 LEU A 188 REMARK 465 PRO A 189 REMARK 465 LYS A 190 REMARK 465 SER A 191 REMARK 465 LEU A 192 REMARK 465 ASN A 193 REMARK 465 ILE A 194 REMARK 465 PRO A 195 REMARK 465 ASN A 196 REMARK 465 ASP A 197 REMARK 465 ILE A 198 REMARK 465 LEU A 199 REMARK 465 ASN A 200 REMARK 465 TYR A 201 REMARK 465 ASP A 202 REMARK 465 VAL A 203 REMARK 465 TYR A 204 REMARK 465 ASN A 205 REMARK 465 SER A 206 REMARK 465 ALA A 207 REMARK 465 ASN A 208 REMARK 465 ASN A 209 REMARK 465 ARG A 210 REMARK 465 ASN A 211 REMARK 465 ASP A 212 REMARK 465 ILE A 213 REMARK 465 VAL A 214 REMARK 465 VAL A 215 REMARK 465 LYS A 216 REMARK 465 ASP A 217 REMARK 465 GLU A 218 REMARK 465 VAL A 219 REMARK 465 THR A 220 REMARK 465 ASN A 221 REMARK 465 LYS A 222 REMARK 465 GLN A 223 REMARK 465 VAL A 370 REMARK 465 VAL A 371 REMARK 465 LEU A 372 REMARK 465 ASN A 373 REMARK 465 SER A 374 REMARK 465 PHE A 375 REMARK 465 LYS A 376 REMARK 465 THR A 377 REMARK 465 SER A 378 REMARK 465 ALA A 379 REMARK 465 ALA A 380 REMARK 465 ALA A 381 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 253 60.62 -101.03 REMARK 500 ASN A 289 35.64 -148.94 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 401 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 132 OD2 REMARK 620 2 ASP A 134 OD2 101.3 REMARK 620 3 HIS A 23 ND1 82.8 20.3 REMARK 620 4 GLU A 369 OE1 125.3 34.7 46.2 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 402 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 324 NE2 REMARK 620 2 ASP A 309 OD2 90.5 REMARK 620 N 1 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN A 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN A 402 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN A 403 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CL A 404 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CL A 405 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL A 406 DBREF 4YS4 A 21 378 UNP Q8I1Y0 PF41_PLAF7 21 378 SEQADV 4YS4 GLY A 17 UNP Q8I1Y0 EXPRESSION TAG SEQADV 4YS4 SER A 18 UNP Q8I1Y0 EXPRESSION TAG SEQADV 4YS4 MET A 19 UNP Q8I1Y0 EXPRESSION TAG SEQADV 4YS4 GLY A 20 UNP Q8I1Y0 EXPRESSION TAG SEQADV 4YS4 ALA A 49 UNP Q8I1Y0 SER 49 ENGINEERED MUTATION SEQADV 4YS4 ALA A 71 UNP Q8I1Y0 SER 71 ENGINEERED MUTATION SEQADV 4YS4 ALA A 79 UNP Q8I1Y0 SER 79 ENGINEERED MUTATION SEQADV 4YS4 ALA A 151 UNP Q8I1Y0 SER 151 ENGINEERED MUTATION SEQADV 4YS4 ALA A 184 UNP Q8I1Y0 THR 184 ENGINEERED MUTATION SEQADV 4YS4 ALA A 207 UNP Q8I1Y0 SER 207 ENGINEERED MUTATION SEQADV 4YS4 ALA A 353 UNP Q8I1Y0 SER 353 ENGINEERED MUTATION SEQADV 4YS4 ALA A 379 UNP Q8I1Y0 EXPRESSION TAG SEQADV 4YS4 ALA A 380 UNP Q8I1Y0 EXPRESSION TAG SEQADV 4YS4 ALA A 381 UNP Q8I1Y0 EXPRESSION TAG SEQRES 1 A 365 GLY SER MET GLY LYS SER HIS LYS CYS ASP PHE THR LYS SEQRES 2 A 365 GLU LYS TYR LEU LEU SER GLY GLU LYS GLU VAL SER CYS SEQRES 3 A 365 GLU ILE ASP ALA ASN PRO ALA ASP ASP ILE THR PHE ILE SEQRES 4 A 365 CYS PRO ASN LYS ILE ASP SER LEU CYS PHE HIS THR VAL SEQRES 5 A 365 ASN ILE ALA LYS ASN ILE ASN GLN ASN LYS ALA THR MET SEQRES 6 A 365 SER ILE GLN ASP LEU LEU TYR GLY SER VAL VAL TYR GLY SEQRES 7 A 365 ASN THR LEU PHE ILE SER PRO TYR VAL ARG THR ASN THR SEQRES 8 A 365 PRO PHE TYR CYS PHE CYS ASN LEU ASP THR VAL THR ILE SEQRES 9 A 365 GLN LYS PHE LEU LYS ILE ASN ARG PHE LEU LYS ASP ASP SEQRES 10 A 365 ASP GLU LEU SER GLU ALA ASP VAL MET LYS HIS LEU LYS SEQRES 11 A 365 GLY GLY ASN VAL ALA GLU ALA GLN ALA ASP GLU TYR LEU SEQRES 12 A 365 ASN LYS ALA LEU ASN ARG PHE LYS LYS MET LYS ASP LEU SEQRES 13 A 365 SER LYS PHE PHE ASN ASP GLN ALA ASP ASN THR ALA LYS SEQRES 14 A 365 LEU ASN LEU PRO LYS SER LEU ASN ILE PRO ASN ASP ILE SEQRES 15 A 365 LEU ASN TYR ASP VAL TYR ASN SER ALA ASN ASN ARG ASN SEQRES 16 A 365 ASP ILE VAL VAL LYS ASP GLU VAL THR ASN LYS GLN ILE SEQRES 17 A 365 ILE SER LYS ARG GLY ILE MET SER VAL PHE VAL ARG SER SEQRES 18 A 365 ASN ASN ASN VAL ILE LYS GLY CYS ASP PHE GLY ASN ASN SEQRES 19 A 365 ASN LYS ASN TYR PHE SER HIS PRO ILE SER VAL ALA GLY SEQRES 20 A 365 MLY VAL ASN ASN LYS VAL CYS LYS ILE GLN GLY LYS PRO SEQRES 21 A 365 GLY GLU LEU VAL GLY PHE LYS CYS ALA PHE GLU GLU ASN SEQRES 22 A 365 GLY LYS VAL GLU PRO PRO ASN CYS PHE ASP GLN VAL LEU SEQRES 23 A 365 HIS LYS ASN LYS VAL THR ASP LEU LYS THR LEU ILE PRO SEQRES 24 A 365 GLY TYR ALA SER TYR THR ASN LYS HIS SER SER LYS TYR SEQRES 25 A 365 PRO TYR TYR LEU LYS ILE PRO HIS PHE VAL ASN GLU GLN SEQRES 26 A 365 TYR THR ILE GLN CYS MLY CYS MLY SER ASN ASN ALA GLN SEQRES 27 A 365 ASN GLU TYR THR PHE GLU LEU ASP ILE GLN PRO GLY GLU SEQRES 28 A 365 SER GLU VAL VAL LEU ASN SER PHE LYS THR SER ALA ALA SEQRES 29 A 365 ALA MODRES 4YS4 MLY A 264 LYS MODIFIED RESIDUE MODRES 4YS4 MLY A 347 LYS MODIFIED RESIDUE MODRES 4YS4 MLY A 349 LYS MODIFIED RESIDUE HET MLY A 264 11 HET MLY A 347 11 HET MLY A 349 11 HET ZN A 401 1 HET ZN A 402 1 HET ZN A 403 1 HET CL A 404 1 HET CL A 405 1 HET GOL A 406 6 HETNAM MLY N-DIMETHYL-LYSINE HETNAM ZN ZINC ION HETNAM CL CHLORIDE ION HETNAM GOL GLYCEROL HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 1 MLY 3(C8 H18 N2 O2) FORMUL 2 ZN 3(ZN 2+) FORMUL 5 CL 2(CL 1-) FORMUL 7 GOL C3 H8 O3 FORMUL 8 HOH *54(H2 O) HELIX 1 AA1 LYS A 29 LEU A 34 1 6 HELIX 2 AA2 ILE A 83 LEU A 87 1 5 HELIX 3 AA3 ASP A 116 ASN A 127 1 12 HELIX 4 AA4 ARG A 128 LEU A 130 5 3 HELIX 5 AA5 LYS A 311 LEU A 313 5 3 HELIX 6 AA6 ASN A 352 GLU A 356 5 5 SHEET 1 AA1 4 SER A 22 ASP A 26 0 SHEET 2 AA1 4 ASP A 51 ILE A 55 1 O ASP A 51 N HIS A 23 SHEET 3 AA1 4 THR A 96 PHE A 98 -1 O LEU A 97 N ILE A 52 SHEET 4 AA1 4 VAL A 91 TYR A 93 -1 N VAL A 91 O PHE A 98 SHEET 1 AA2 3 GLU A 39 ALA A 46 0 SHEET 2 AA2 3 LYS A 227 VAL A 235 1 O PHE A 234 N ALA A 46 SHEET 3 AA2 3 THR A 107 LEU A 115 -1 N CYS A 111 O MET A 231 SHEET 1 AA3 2 THR A 67 ASN A 69 0 SHEET 2 AA3 2 THR A 80 SER A 82 -1 O MET A 81 N VAL A 68 SHEET 1 AA4 5 PHE A 255 PRO A 258 0 SHEET 2 AA4 5 ILE A 242 ASP A 246 1 N ILE A 242 O SER A 256 SHEET 3 AA4 5 LEU A 279 LYS A 283 1 O LYS A 283 N CYS A 245 SHEET 4 AA4 5 TYR A 330 LYS A 333 -1 O LEU A 332 N VAL A 280 SHEET 5 AA4 5 ALA A 318 TYR A 320 -1 N ALA A 318 O LYS A 333 SHEET 1 AA5 4 VAL A 269 GLY A 274 0 SHEET 2 AA5 4 TYR A 357 ILE A 363 1 O ASP A 362 N ILE A 272 SHEET 3 AA5 4 TYR A 342 MLY A 349 -1 N TYR A 342 O ILE A 363 SHEET 4 AA5 4 LYS A 291 GLU A 293 -1 N LYS A 291 O MLY A 349 SHEET 1 AA6 5 VAL A 269 GLY A 274 0 SHEET 2 AA6 5 TYR A 357 ILE A 363 1 O ASP A 362 N ILE A 272 SHEET 3 AA6 5 TYR A 342 MLY A 349 -1 N TYR A 342 O ILE A 363 SHEET 4 AA6 5 GLN A 300 HIS A 303 -1 N LEU A 302 O GLN A 345 SHEET 5 AA6 5 LYS A 306 ASP A 309 -1 O THR A 308 N VAL A 301 SHEET 1 AA7 2 PHE A 337 VAL A 338 0 SHEET 2 AA7 2 GLY A 366 GLU A 367 -1 O GLY A 366 N VAL A 338 SSBOND 1 CYS A 25 CYS A 42 1555 1555 2.04 SSBOND 2 CYS A 56 CYS A 113 1555 1555 2.03 SSBOND 3 CYS A 64 CYS A 111 1555 1555 2.04 SSBOND 4 CYS A 245 CYS A 270 1555 1555 2.03 SSBOND 5 CYS A 284 CYS A 348 1555 1555 2.04 SSBOND 6 CYS A 297 CYS A 346 1555 1555 2.03 LINK OD2 ASP A 132 ZN ZN A 401 1555 1555 2.01 LINK OD2 ASP A 134 ZN ZN A 401 1555 1555 1.91 LINK C GLY A 263 N MLY A 264 1555 1555 1.33 LINK C MLY A 264 N VAL A 265 1555 1555 1.33 LINK NE2 HIS A 324 ZN ZN A 402 1555 1555 2.02 LINK ND1 HIS A 336 ZN ZN A 403 1555 1555 2.07 LINK C CYS A 346 N MLY A 347 1555 1555 1.33 LINK C MLY A 347 N CYS A 348 1555 1555 1.33 LINK C CYS A 348 N MLY A 349 1555 1555 1.33 LINK C MLY A 349 N SER A 350 1555 1555 1.33 LINK ND1 HIS A 23 ZN ZN A 401 1555 3757 2.13 LINK OD2 ASP A 309 ZN ZN A 402 1555 2765 1.94 LINK OE1 GLU A 369 ZN ZN A 401 1555 2765 2.30 CISPEP 1 CYS A 64 PHE A 65 0 12.45 CISPEP 2 GLU A 293 PRO A 294 0 -3.70 CISPEP 3 CYS A 297 PHE A 298 0 5.86 SITE 1 AC1 4 HIS A 23 ASP A 132 ASP A 134 GLU A 369 SITE 1 AC2 4 ASP A 309 HIS A 324 CL A 404 CL A 405 SITE 1 AC3 3 SER A 137 HIS A 336 HOH A 553 SITE 1 AC4 5 TYR A 93 ASP A 309 LYS A 323 HIS A 324 SITE 2 AC4 5 ZN A 402 SITE 1 AC5 5 GLY A 94 ASP A 309 ASN A 322 HIS A 324 SITE 2 AC5 5 ZN A 402 SITE 1 AC6 3 SER A 82 GLN A 84 ASP A 85 CRYST1 133.760 133.760 133.760 90.00 90.00 90.00 I 2 3 24 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.007476 0.000000 0.000000 0.00000 SCALE2 0.000000 0.007476 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007476 0.00000