HEADER SOLUTE-BINDING PROTEIN 16-MAR-15 4YS6 TITLE CRYSTAL STRUCTURE OF AN ABC TRANSPORTER SOLUTE BINDING PROTEIN TITLE 2 (IPR025997) FROM CLOSTRIDIUM PHYTOFERMENTANS (CPHY_1585, TARGET EFI- TITLE 3 511156) WITH BOUND BETA-D-GLUCOSE COMPND MOL_ID: 1; COMPND 2 MOLECULE: PUTATIVE SOLUTE-BINDING COMPONENT OF ABC TRANSPORTER; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: CLOSTRIDIUM PHYTOFERMENTANS (STRAIN ATCC 700394 SOURCE 3 / DSM 18823 / ISDG); SOURCE 4 ORGANISM_TAXID: 357809; SOURCE 5 STRAIN: ATCC 700394 / DSM 18823 / ISDG; SOURCE 6 GENE: CPHY_1585; SOURCE 7 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 8 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 9 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 10 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 11 EXPRESSION_SYSTEM_PLASMID: PET KEYWDS ABC TRANSPORTER, SOLUTE-BINDING PROTEIN, ENZYME FUNCTION INITIATIVE, KEYWDS 2 EFI, STRUCTURAL GENOMICS EXPDTA X-RAY DIFFRACTION AUTHOR M.W.VETTING,Y.PATSKOVSKY,N.F.AL OBAIDI,R.TORO,L.L.MORISCO,J.BENACH, AUTHOR 2 J.KOSS,S.R.WASSERMAN,J.D.ATTONITO,A.SCOTT GLENN,S.CHAMALA, AUTHOR 3 S.CHOWDHURY,J.LAFLEUR,J.LOVE,R.D.SEIDEL,K.L.WHALEN,J.A.GERLT, AUTHOR 4 S.C.ALMO,ENZYME FUNCTION INITIATIVE (EFI) REVDAT 3 29-JUL-20 4YS6 1 COMPND REMARK HETNAM LINK REVDAT 3 2 1 SITE REVDAT 2 26-FEB-20 4YS6 1 SOURCE REMARK REVDAT 1 08-APR-15 4YS6 0 JRNL AUTH M.W.VETTING,Y.PATSKOVSKY,N.F.AL OBAIDI,R.TORO,L.L.MORISCO, JRNL AUTH 2 J.BENACH,J.KOSS,S.R.WASSERMAN,J.D.ATTONITO,A.SCOTT GLENN, JRNL AUTH 3 S.CHAMALA,S.CHOWDHURY,J.LAFLEUR,J.LOVE,R.D.SEIDEL, JRNL AUTH 4 K.L.WHALEN,J.A.GERLT,S.C.ALMO, JRNL AUTH 5 ENZYME FUNCTION INITIATIVE (EFI) JRNL TITL CRYSTAL STRUCTURE OF AN ABC TRANSPORTER SOLUTE BINDING JRNL TITL 2 PROTEIN (IPR025997) FROM CLOSTRIDIUM PHYTOFERMENTANS JRNL TITL 3 (CPHY_1585, TARGET EFI-511156) WITH BOUND BETA-D-GLUCOSE JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.70 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE: 1.9_1692) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.70 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 23.94 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.350 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 3 NUMBER OF REFLECTIONS : 36742 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.150 REMARK 3 R VALUE (WORKING SET) : 0.150 REMARK 3 FREE R VALUE : 0.183 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 2.920 REMARK 3 FREE R VALUE TEST SET COUNT : 1077 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 23.9409 - 3.3932 1.00 4783 145 0.1574 0.1924 REMARK 3 2 3.3932 - 2.6945 1.00 4526 142 0.1532 0.1673 REMARK 3 3 2.6945 - 2.3542 1.00 4503 128 0.1353 0.1639 REMARK 3 4 2.3542 - 2.1391 1.00 4440 134 0.1221 0.1650 REMARK 3 5 2.1391 - 1.9859 1.00 4438 121 0.1268 0.1500 REMARK 3 6 1.9859 - 1.8688 1.00 4384 144 0.1454 0.1903 REMARK 3 7 1.8688 - 1.7753 1.00 4356 143 0.1732 0.2337 REMARK 3 8 1.7753 - 1.6980 0.98 4328 120 0.2137 0.2715 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.130 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 17.530 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 18.20 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 24.51 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.010 2538 REMARK 3 ANGLE : 1.254 3442 REMARK 3 CHIRALITY : 0.049 393 REMARK 3 PLANARITY : 0.006 447 REMARK 3 DIHEDRAL : 13.029 924 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 5 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 16 THROUGH 69 ) REMARK 3 ORIGIN FOR THE GROUP (A): -29.5025 51.8593 14.4940 REMARK 3 T TENSOR REMARK 3 T11: 0.1824 T22: 0.1655 REMARK 3 T33: 0.1844 T12: -0.0015 REMARK 3 T13: 0.0060 T23: -0.0228 REMARK 3 L TENSOR REMARK 3 L11: 1.5546 L22: 0.9575 REMARK 3 L33: 1.1555 L12: -0.4008 REMARK 3 L13: 0.1295 L23: -0.1800 REMARK 3 S TENSOR REMARK 3 S11: -0.0198 S12: -0.1073 S13: 0.2591 REMARK 3 S21: 0.0264 S22: -0.0071 S23: 0.0096 REMARK 3 S31: -0.1398 S32: -0.0495 S33: 0.0272 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 70 THROUGH 134 ) REMARK 3 ORIGIN FOR THE GROUP (A): -33.7513 39.0636 11.2394 REMARK 3 T TENSOR REMARK 3 T11: 0.1169 T22: 0.1651 REMARK 3 T33: 0.1226 T12: 0.0034 REMARK 3 T13: 0.0101 T23: 0.0056 REMARK 3 L TENSOR REMARK 3 L11: 1.6071 L22: 1.1687 REMARK 3 L33: 0.2405 L12: -0.9483 REMARK 3 L13: -0.3697 L23: 0.1558 REMARK 3 S TENSOR REMARK 3 S11: 0.0257 S12: 0.0010 S13: -0.0324 REMARK 3 S21: 0.0228 S22: -0.0203 S23: 0.1102 REMARK 3 S31: -0.0381 S32: -0.1074 S33: -0.0002 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 135 THROUGH 155 ) REMARK 3 ORIGIN FOR THE GROUP (A): -15.4528 20.1432 9.2484 REMARK 3 T TENSOR REMARK 3 T11: 0.1172 T22: 0.0877 REMARK 3 T33: 0.1692 T12: -0.0314 REMARK 3 T13: 0.0021 T23: 0.0221 REMARK 3 L TENSOR REMARK 3 L11: 2.1516 L22: 1.7643 REMARK 3 L33: 2.8323 L12: -0.8843 REMARK 3 L13: -0.4715 L23: 1.0063 REMARK 3 S TENSOR REMARK 3 S11: 0.0170 S12: 0.0292 S13: -0.3107 REMARK 3 S21: 0.1075 S22: 0.0080 S23: 0.0105 REMARK 3 S31: 0.3058 S32: -0.0562 S33: 0.0021 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 156 THROUGH 239 ) REMARK 3 ORIGIN FOR THE GROUP (A): -14.8876 25.0202 15.0791 REMARK 3 T TENSOR REMARK 3 T11: 0.0985 T22: 0.0987 REMARK 3 T33: 0.1130 T12: -0.0077 REMARK 3 T13: -0.0038 T23: 0.0251 REMARK 3 L TENSOR REMARK 3 L11: 1.0221 L22: 1.1750 REMARK 3 L33: 0.8926 L12: -0.1889 REMARK 3 L13: 0.1414 L23: 0.2838 REMARK 3 S TENSOR REMARK 3 S11: -0.0023 S12: -0.1082 S13: -0.1863 REMARK 3 S21: 0.1546 S22: 0.0528 S23: -0.0342 REMARK 3 S31: 0.0521 S32: 0.0777 S33: -0.0396 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 240 THROUGH 339 ) REMARK 3 ORIGIN FOR THE GROUP (A): -21.7702 39.9078 2.6582 REMARK 3 T TENSOR REMARK 3 T11: 0.1466 T22: 0.1662 REMARK 3 T33: 0.1392 T12: -0.0042 REMARK 3 T13: 0.0132 T23: 0.0139 REMARK 3 L TENSOR REMARK 3 L11: 0.9078 L22: 0.3663 REMARK 3 L33: 0.4987 L12: 0.0067 REMARK 3 L13: 0.3198 L23: 0.0021 REMARK 3 S TENSOR REMARK 3 S11: 0.0135 S12: 0.1431 S13: 0.0502 REMARK 3 S21: -0.0473 S22: -0.0265 S23: -0.0324 REMARK 3 S31: -0.0877 S32: 0.0636 S33: 0.0049 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4YS6 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 17-MAR-15. REMARK 100 THE DEPOSITION ID IS D_1000208014. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 11-FEB-15 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 31-ID REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9793 REMARK 200 MONOCHROMATOR : GRAPHITE REMARK 200 OPTICS : MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : RAYONIX MX225HE REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-3000 REMARK 200 DATA SCALING SOFTWARE : AIMLESS 0.5.1 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 36742 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.698 REMARK 200 RESOLUTION RANGE LOW (A) : 100.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 200 DATA REDUNDANCY : 11.70 REMARK 200 R MERGE (I) : 0.10200 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 20.3000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.69 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.73 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.4 REMARK 200 DATA REDUNDANCY IN SHELL : 11.00 REMARK 200 R MERGE FOR SHELL (I) : 0.00000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.400 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: SHELX REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 38.95 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.01 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PROTEIN (10 MM HEPES PH 7.5, 5 MM DTT, REMARK 280 5 MM D-GLUCOSE); RESERVOIR (MCSG2 B1)(1.1 M SODIUM MALONATE PH REMARK 280 7.0, 0.1 M HEPES PH 7.0, 0.5 %(V/V) JEFFAMINE ED-2001 PH 7.0); REMARK 280 CRYOPROTECTION (100% RESERVOIR, DEHYDRATION), VAPOR DIFFUSION, REMARK 280 SITTING DROP, TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 65 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+2/3 REMARK 290 3555 -X+Y,-X,Z+1/3 REMARK 290 4555 -X,-Y,Z+1/2 REMARK 290 5555 Y,-X+Y,Z+1/6 REMARK 290 6555 X-Y,X,Z+5/6 REMARK 290 7555 Y,X,-Z+2/3 REMARK 290 8555 X-Y,-Y,-Z REMARK 290 9555 -X,-X+Y,-Z+1/3 REMARK 290 10555 -Y,-X,-Z+1/6 REMARK 290 11555 -X+Y,Y,-Z+1/2 REMARK 290 12555 X,X-Y,-Z+5/6 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 113.33600 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 56.66800 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 85.00200 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 28.33400 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 141.67000 REMARK 290 SMTRY1 7 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 7 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 113.33600 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 9 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 9 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 9 0.000000 0.000000 -1.000000 56.66800 REMARK 290 SMTRY1 10 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 10 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 10 0.000000 0.000000 -1.000000 28.33400 REMARK 290 SMTRY1 11 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 11 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 11 0.000000 0.000000 -1.000000 85.00200 REMARK 290 SMTRY1 12 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 12 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 12 0.000000 0.000000 -1.000000 141.67000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 697 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MSE A -20 REMARK 465 HIS A -19 REMARK 465 HIS A -18 REMARK 465 HIS A -17 REMARK 465 HIS A -16 REMARK 465 HIS A -15 REMARK 465 HIS A -14 REMARK 465 SER A -13 REMARK 465 SER A -12 REMARK 465 GLY A -11 REMARK 465 VAL A -10 REMARK 465 ASP A -9 REMARK 465 LEU A -8 REMARK 465 GLY A -7 REMARK 465 THR A -6 REMARK 465 GLU A -5 REMARK 465 ASN A -4 REMARK 465 LEU A -3 REMARK 465 TYR A -2 REMARK 465 PHE A -1 REMARK 465 GLN A 0 REMARK 465 SER A 1 REMARK 465 MSE A 2 REMARK 465 GLY A 3 REMARK 465 CYS A 4 REMARK 465 GLY A 5 REMARK 465 SER A 6 REMARK 465 LYS A 7 REMARK 465 ALA A 8 REMARK 465 THR A 9 REMARK 465 SER A 10 REMARK 465 GLY A 11 REMARK 465 LYS A 12 REMARK 465 GLY A 13 REMARK 465 SER A 14 REMARK 465 ASP A 15 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ASP A 336 CG OD1 OD2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 103 -49.20 68.41 REMARK 500 THR A 150 -168.79 -115.72 REMARK 500 ASP A 214 -158.64 -82.18 REMARK 500 ASP A 251 -20.05 117.91 REMARK 500 LYS A 299 -21.75 -150.51 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 695 DISTANCE = 5.91 ANGSTROMS REMARK 525 HOH A 696 DISTANCE = 6.34 ANGSTROMS REMARK 525 HOH A 697 DISTANCE = 6.56 ANGSTROMS REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA A 408 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASN A 31 O REMARK 620 2 SER A 35 OG 72.0 REMARK 620 3 HOH A 607 O 82.9 76.3 REMARK 620 4 HOH A 629 O 107.1 148.6 72.6 REMARK 620 5 HOH A 685 O 104.8 112.1 169.9 98.6 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA A 406 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 SER A 54 O REMARK 620 2 SER A 54 O 1.4 REMARK 620 3 ASP A 56 OD1 95.7 94.3 REMARK 620 4 HOH A 513 O 63.8 64.8 143.6 REMARK 620 5 HOH A 528 O 91.4 91.0 84.6 67.3 REMARK 620 6 HOH A 655 O 119.0 119.2 85.2 130.6 148.7 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA A 405 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 133 O REMARK 620 2 GLU A 133 OE1 81.5 REMARK 620 3 ASN A 136 OD1 85.2 161.9 REMARK 620 4 HOH A 667 O 172.8 105.7 87.7 REMARK 620 5 HOH A 680 O 110.3 92.1 81.1 69.7 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA A 404 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 LYS A 134 O REMARK 620 2 ALA A 286 O 65.6 REMARK 620 3 GLY A 291 O 64.3 4.0 REMARK 620 4 HOH A 657 O 62.1 3.5 4.4 REMARK 620 5 HOH A 662 O 61.7 4.0 3.8 1.2 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA A 407 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLY A 263 O REMARK 620 2 VAL A 295 O 28.9 REMARK 620 3 HOH A 651 O 26.7 2.6 REMARK 620 4 HOH A 671 O 27.7 4.7 3.1 REMARK 620 5 HOH A 674 O 31.7 4.8 5.5 4.1 REMARK 620 N 1 2 3 4 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: EFI-511156 RELATED DB: TARGETTRACK DBREF 4YS6 A 3 339 UNP A9KQP6 A9KQP6_CLOPH 19 355 SEQADV 4YS6 MSE A -20 UNP A9KQP6 EXPRESSION TAG SEQADV 4YS6 HIS A -19 UNP A9KQP6 EXPRESSION TAG SEQADV 4YS6 HIS A -18 UNP A9KQP6 EXPRESSION TAG SEQADV 4YS6 HIS A -17 UNP A9KQP6 EXPRESSION TAG SEQADV 4YS6 HIS A -16 UNP A9KQP6 EXPRESSION TAG SEQADV 4YS6 HIS A -15 UNP A9KQP6 EXPRESSION TAG SEQADV 4YS6 HIS A -14 UNP A9KQP6 EXPRESSION TAG SEQADV 4YS6 SER A -13 UNP A9KQP6 EXPRESSION TAG SEQADV 4YS6 SER A -12 UNP A9KQP6 EXPRESSION TAG SEQADV 4YS6 GLY A -11 UNP A9KQP6 EXPRESSION TAG SEQADV 4YS6 VAL A -10 UNP A9KQP6 EXPRESSION TAG SEQADV 4YS6 ASP A -9 UNP A9KQP6 EXPRESSION TAG SEQADV 4YS6 LEU A -8 UNP A9KQP6 EXPRESSION TAG SEQADV 4YS6 GLY A -7 UNP A9KQP6 EXPRESSION TAG SEQADV 4YS6 THR A -6 UNP A9KQP6 EXPRESSION TAG SEQADV 4YS6 GLU A -5 UNP A9KQP6 EXPRESSION TAG SEQADV 4YS6 ASN A -4 UNP A9KQP6 EXPRESSION TAG SEQADV 4YS6 LEU A -3 UNP A9KQP6 EXPRESSION TAG SEQADV 4YS6 TYR A -2 UNP A9KQP6 EXPRESSION TAG SEQADV 4YS6 PHE A -1 UNP A9KQP6 EXPRESSION TAG SEQADV 4YS6 GLN A 0 UNP A9KQP6 EXPRESSION TAG SEQADV 4YS6 SER A 1 UNP A9KQP6 EXPRESSION TAG SEQADV 4YS6 MSE A 2 UNP A9KQP6 EXPRESSION TAG SEQRES 1 A 360 MSE HIS HIS HIS HIS HIS HIS SER SER GLY VAL ASP LEU SEQRES 2 A 360 GLY THR GLU ASN LEU TYR PHE GLN SER MSE GLY CYS GLY SEQRES 3 A 360 SER LYS ALA THR SER GLY LYS GLY SER ASP LYS LEU VAL SEQRES 4 A 360 GLY VAL ALA MSE PRO THR LYS ASP LEU GLN ARG TRP ASN SEQRES 5 A 360 GLN ASP GLY SER ASN MSE GLU LYS GLN LEU LYS ASP ALA SEQRES 6 A 360 GLY TYR GLU VAL ASP LEU GLN TYR ALA SER ASN ASP VAL SEQRES 7 A 360 GLN THR GLN VAL SER GLN ILE GLU ASN MSE ILE SER ASN SEQRES 8 A 360 GLY CYS LYS LEU LEU VAL ILE ALA SER ILE GLU GLY ASP SEQRES 9 A 360 SER LEU GLY THR VAL LEU ALA GLN ALA LYS LYS LYS GLY SEQRES 10 A 360 ILE SER VAL ILE ALA TYR ASP ARG LEU ILE MSE ASN SER SEQRES 11 A 360 ASP ALA VAL SER TYR TYR ALA THR PHE ASP ASN TYR MSE SEQRES 12 A 360 VAL GLY THR LYS GLN GLY GLU TYR ILE LYS GLU LYS LEU SEQRES 13 A 360 ASN LEU GLU THR ALA LYS GLY PRO PHE ASN LEU GLU ILE SEQRES 14 A 360 PHE THR GLY ASP PRO GLY ASP ASN ASN ALA ARG PHE PHE SEQRES 15 A 360 TYR GLY GLY ALA MSE ASP VAL LEU LYS PRO TYR VAL ASP SEQRES 16 A 360 GLY GLY VAL LEU VAL VAL LYS SER GLY SER VAL ALA PHE SEQRES 17 A 360 GLU LYS VAL ALA THR ALA GLY TRP SER THR GLU THR ALA SEQRES 18 A 360 GLN ASN ARG MSE ASP ALA ILE ILE ALA SER TYR TYR ALA SEQRES 19 A 360 ASP GLY THR LYS LEU ASP ALA VAL LEU CYS SER ASN ASP SEQRES 20 A 360 SER THR ALA LEU GLY VAL THR ASN ALA LEU THR ALA SER SEQRES 21 A 360 TYR LYS GLY GLU TRP PRO ILE VAL THR GLY GLN ASP CYS SEQRES 22 A 360 ASP ILE ALA ASN VAL LYS ASN MSE LEU ASP GLY LYS GLN SEQRES 23 A 360 SER MSE SER ILE PHE LYS ASP THR ARG THR LEU ALA SER SEQRES 24 A 360 GLN VAL VAL LYS MSE VAL ASP ALA ILE MSE LYS GLY GLY SEQRES 25 A 360 GLU ALA PRO VAL ASN ASP THR LYS SER TYR ASP ASN GLY SEQRES 26 A 360 ASN GLY ILE VAL PRO SER TYR LEU CYS GLU PRO VAL PHE SEQRES 27 A 360 ALA ASP ALA THR ASN TYR LYS GLU LEU LEU ILE ASP SER SEQRES 28 A 360 GLY TYR TYR THR GLU ASP GLN LEU LYS MODRES 4YS6 MSE A 22 MET MODIFIED RESIDUE MODRES 4YS6 MSE A 37 MET MODIFIED RESIDUE MODRES 4YS6 MSE A 67 MET MODIFIED RESIDUE MODRES 4YS6 MSE A 107 MET MODIFIED RESIDUE MODRES 4YS6 MSE A 122 MET MODIFIED RESIDUE MODRES 4YS6 MSE A 166 MET MODIFIED RESIDUE MODRES 4YS6 MSE A 204 MET MODIFIED RESIDUE MODRES 4YS6 MSE A 260 MET MODIFIED RESIDUE MODRES 4YS6 MSE A 267 MET MODIFIED RESIDUE MODRES 4YS6 MSE A 283 MET MODIFIED RESIDUE MODRES 4YS6 MSE A 288 MET MODIFIED RESIDUE HET MSE A 22 17 HET MSE A 37 17 HET MSE A 67 17 HET MSE A 107 17 HET MSE A 122 17 HET MSE A 166 17 HET MSE A 204 17 HET MSE A 260 17 HET MSE A 267 17 HET MSE A 283 17 HET MSE A 288 17 HET CL A 401 1 HET CL A 402 1 HET BGC A 403 12 HET NA A 404 1 HET NA A 405 1 HET NA A 406 1 HET NA A 407 1 HET NA A 408 1 HETNAM MSE SELENOMETHIONINE HETNAM CL CHLORIDE ION HETNAM BGC BETA-D-GLUCOPYRANOSE HETNAM NA SODIUM ION FORMUL 1 MSE 11(C5 H11 N O2 SE) FORMUL 2 CL 2(CL 1-) FORMUL 4 BGC C6 H12 O6 FORMUL 5 NA 5(NA 1+) FORMUL 10 HOH *197(H2 O) HELIX 1 AA1 GLN A 28 ALA A 44 1 17 HELIX 2 AA2 ASP A 56 ASN A 70 1 15 HELIX 3 AA3 LEU A 85 LYS A 95 1 11 HELIX 4 AA4 ASP A 119 LEU A 135 1 17 HELIX 5 AA5 ASP A 155 GLY A 175 1 21 HELIX 6 AA6 ALA A 186 ALA A 191 1 6 HELIX 7 AA7 THR A 192 TRP A 195 5 4 HELIX 8 AA8 SER A 196 TYR A 212 1 17 HELIX 9 AA9 ASN A 225 TYR A 240 1 16 HELIX 10 AB1 ASP A 253 ASP A 262 1 10 HELIX 11 AB2 ASP A 272 LYS A 289 1 18 HELIX 12 AB3 ASN A 322 ILE A 328 1 7 HELIX 13 AB4 THR A 334 LYS A 339 5 6 SHEET 1 AA1 6 GLU A 47 TYR A 52 0 SHEET 2 AA1 6 LEU A 17 MSE A 22 1 N VAL A 20 O ASP A 49 SHEET 3 AA1 6 LEU A 74 ILE A 77 1 O VAL A 76 N GLY A 19 SHEET 4 AA1 6 SER A 98 TYR A 102 1 O ILE A 100 N LEU A 75 SHEET 5 AA1 6 TYR A 114 PHE A 118 1 O TYR A 114 N ALA A 101 SHEET 6 AA1 6 SER A 310 CYS A 313 1 O CYS A 313 N THR A 117 SHEET 1 AA2 4 LEU A 178 VAL A 179 0 SHEET 2 AA2 4 PHE A 144 PHE A 149 1 N PHE A 144 O VAL A 179 SHEET 3 AA2 4 ALA A 220 CYS A 223 1 O LEU A 222 N PHE A 149 SHEET 4 AA2 4 ILE A 246 VAL A 247 1 O ILE A 246 N VAL A 221 SHEET 1 AA3 2 SER A 268 PHE A 270 0 SHEET 2 AA3 2 VAL A 316 ALA A 318 -1 O VAL A 316 N PHE A 270 LINK C ALA A 21 N MSE A 22 1555 1555 1.33 LINK C MSE A 22 N PRO A 23 1555 1555 1.34 LINK C ASN A 36 N MSE A 37 1555 1555 1.33 LINK C MSE A 37 N GLU A 38 1555 1555 1.33 LINK C ASN A 66 N MSE A 67 1555 1555 1.33 LINK C MSE A 67 N ILE A 68 1555 1555 1.33 LINK C ILE A 106 N MSE A 107 1555 1555 1.33 LINK C MSE A 107 N ASN A 108 1555 1555 1.33 LINK C TYR A 121 N MSE A 122 1555 1555 1.32 LINK C MSE A 122 N VAL A 123 1555 1555 1.34 LINK C ALA A 165 N MSE A 166 1555 1555 1.32 LINK C MSE A 166 N ASP A 167 1555 1555 1.33 LINK C ARG A 203 N MSE A 204 1555 1555 1.33 LINK C MSE A 204 N ASP A 205 1555 1555 1.34 LINK C ASN A 259 N MSE A 260 1555 1555 1.33 LINK C MSE A 260 N LEU A 261 1555 1555 1.33 LINK C SER A 266 N MSE A 267 1555 1555 1.32 LINK C MSE A 267 N SER A 268 1555 1555 1.33 LINK C LYS A 282 N MSE A 283 1555 1555 1.33 LINK C MSE A 283 N VAL A 284 1555 1555 1.33 LINK C ILE A 287 N MSE A 288 1555 1555 1.33 LINK C MSE A 288 N LYS A 289 1555 1555 1.33 LINK O ASN A 31 NA NA A 408 1555 1555 2.91 LINK OG SER A 35 NA NA A 408 1555 1555 2.33 LINK O ASER A 54 NA NA A 406 1555 1555 2.40 LINK O BSER A 54 NA NA A 406 1555 1555 2.40 LINK OD1 ASP A 56 NA NA A 406 1555 1555 2.47 LINK O GLU A 133 NA NA A 405 1555 1555 2.35 LINK OE1 GLU A 133 NA NA A 405 1555 1555 3.18 LINK O LYS A 134 NA NA A 404 1555 8665 2.30 LINK OD1 ASN A 136 NA NA A 405 1555 1555 2.39 LINK O GLY A 263 NA NA A 407 1555 8665 2.40 LINK O ALA A 286 NA NA A 404 1555 1555 2.38 LINK O GLY A 291 NA NA A 404 1555 1555 2.32 LINK O VAL A 295 NA NA A 407 1555 1555 2.36 LINK NA NA A 404 O HOH A 657 1555 8565 2.34 LINK NA NA A 404 O HOH A 662 1555 1555 2.32 LINK NA NA A 405 O HOH A 667 1555 1555 2.38 LINK NA NA A 405 O HOH A 680 1555 1555 3.05 LINK NA NA A 406 O HOH A 513 1555 1555 2.37 LINK NA NA A 406 O HOH A 528 1555 1555 2.54 LINK NA NA A 406 O HOH A 655 1555 1555 2.16 LINK NA NA A 407 O HOH A 651 1555 1555 2.26 LINK NA NA A 407 O HOH A 671 1555 1555 2.30 LINK NA NA A 407 O HOH A 674 1555 1555 2.74 LINK NA NA A 408 O HOH A 607 1555 1555 2.46 LINK NA NA A 408 O HOH A 629 1555 1555 2.40 LINK NA NA A 408 O HOH A 685 1555 1555 2.39 CISPEP 1 GLY A 142 PRO A 143 0 3.72 CRYST1 80.686 80.686 170.004 90.00 90.00 120.00 P 65 2 2 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.012394 0.007156 0.000000 0.00000 SCALE2 0.000000 0.014311 0.000000 0.00000 SCALE3 0.000000 0.000000 0.005882 0.00000