HEADER OXIDOREDUCTASE 17-MAR-15 4YSH TITLE CRYSTAL STRUCTURE OF GLYCINE OXIDASE FROM GEOBACILLUS KAUSTOPHILUS COMPND MOL_ID: 1; COMPND 2 MOLECULE: GLYCINE OXIDASE; COMPND 3 CHAIN: A, B; COMPND 4 EC: 1.4.3.19; COMPND 5 ENGINEERED: YES; COMPND 6 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: GEOBACILLUS KAUSTOPHILUS (STRAIN HTA426); SOURCE 3 ORGANISM_TAXID: 235909; SOURCE 4 STRAIN: HTA426; SOURCE 5 GENE: GK0623; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3)PLYSS; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET3A KEYWDS FLAVOPROTEIN, GLYCINE OXIDASE, SUBSTRATE INHIBITION, OXIDOREDUCTASE EXPDTA X-RAY DIFFRACTION AUTHOR T.SHIONO,T.NOMURA,R.ARAI REVDAT 3 08-NOV-23 4YSH 1 REMARK REVDAT 2 05-FEB-20 4YSH 1 REMARK REVDAT 1 23-MAR-16 4YSH 0 JRNL AUTH T.SHIONO,R.ARAI,Y.NISHIYA,T.NOMURA JRNL TITL CRYSTAL STRUCTURE OF GLYCINE OXIDASE FROM GEOBACILLUS JRNL TITL 2 KAUSTOPHILUS JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 2.20 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.5.0109 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.20 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 50.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 98.3 REMARK 3 NUMBER OF REFLECTIONS : 46153 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.235 REMARK 3 R VALUE (WORKING SET) : 0.233 REMARK 3 FREE R VALUE : 0.266 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 2463 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : NULL REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.20 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.26 REMARK 3 REFLECTION IN BIN (WORKING SET) : 3321 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 98.95 REMARK 3 BIN R VALUE (WORKING SET) : 0.2710 REMARK 3 BIN FREE R VALUE SET COUNT : 182 REMARK 3 BIN FREE R VALUE : 0.3070 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 5510 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 136 REMARK 3 SOLVENT ATOMS : 184 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 34.40 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 44.54 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.66000 REMARK 3 B22 (A**2) : 0.66000 REMARK 3 B33 (A**2) : -0.99000 REMARK 3 B12 (A**2) : 0.33000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.267 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.214 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.163 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 13.612 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.915 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.897 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 5807 ; 0.009 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 7915 ; 1.344 ; 1.995 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 746 ; 5.804 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 225 ;31.050 ;22.356 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 889 ;18.227 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 49 ;19.130 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 891 ; 0.101 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 4390 ; 0.005 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 3666 ; 0.429 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 5826 ; 0.804 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 2141 ; 1.099 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 2084 ; 1.885 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 23 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 2 A 53 REMARK 3 ORIGIN FOR THE GROUP (A): -72.3406 12.7226 13.1490 REMARK 3 T TENSOR REMARK 3 T11: 0.2453 T22: 0.4755 REMARK 3 T33: 0.2991 T12: 0.0501 REMARK 3 T13: 0.0349 T23: 0.0585 REMARK 3 L TENSOR REMARK 3 L11: 4.7282 L22: 2.0913 REMARK 3 L33: 1.2581 L12: 0.7273 REMARK 3 L13: -0.2901 L23: 0.5704 REMARK 3 S TENSOR REMARK 3 S11: 0.0137 S12: -0.7140 S13: -0.3964 REMARK 3 S21: 0.2660 S22: -0.1256 S23: 0.2142 REMARK 3 S31: 0.1327 S32: -0.1644 S33: 0.1118 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 54 A 83 REMARK 3 ORIGIN FOR THE GROUP (A): -66.5174 28.3152 9.3723 REMARK 3 T TENSOR REMARK 3 T11: 0.1575 T22: 0.3170 REMARK 3 T33: 0.4737 T12: 0.1103 REMARK 3 T13: 0.0070 T23: -0.1359 REMARK 3 L TENSOR REMARK 3 L11: 9.0896 L22: 4.0098 REMARK 3 L33: 2.8663 L12: -1.8888 REMARK 3 L13: 3.2612 L23: -2.3582 REMARK 3 S TENSOR REMARK 3 S11: -0.1152 S12: -0.2922 S13: 1.6267 REMARK 3 S21: -0.1189 S22: -0.1826 S23: 0.0152 REMARK 3 S31: -0.1092 S32: -0.1537 S33: 0.2977 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 84 A 107 REMARK 3 ORIGIN FOR THE GROUP (A): -57.8757 30.5968 -2.6937 REMARK 3 T TENSOR REMARK 3 T11: 0.3611 T22: 0.2795 REMARK 3 T33: 0.3346 T12: 0.0976 REMARK 3 T13: -0.0283 T23: -0.0026 REMARK 3 L TENSOR REMARK 3 L11: 0.9660 L22: 4.4638 REMARK 3 L33: 7.9500 L12: -0.7299 REMARK 3 L13: 1.2047 L23: -5.0526 REMARK 3 S TENSOR REMARK 3 S11: 0.0151 S12: -0.0805 S13: 0.1535 REMARK 3 S21: -0.1771 S22: -0.0213 S23: 0.0718 REMARK 3 S31: -0.3410 S32: -0.3270 S33: 0.0062 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 108 A 134 REMARK 3 ORIGIN FOR THE GROUP (A): -59.0392 41.5522 -4.5562 REMARK 3 T TENSOR REMARK 3 T11: 0.4591 T22: 0.1187 REMARK 3 T33: 0.2171 T12: 0.1361 REMARK 3 T13: -0.0778 T23: -0.0357 REMARK 3 L TENSOR REMARK 3 L11: 12.2496 L22: 10.2916 REMARK 3 L33: 5.7202 L12: -6.6978 REMARK 3 L13: -3.0256 L23: 3.5289 REMARK 3 S TENSOR REMARK 3 S11: -0.3403 S12: -0.2828 S13: 0.6670 REMARK 3 S21: -0.6217 S22: -0.0992 S23: -0.2187 REMARK 3 S31: -0.8752 S32: -0.5636 S33: 0.4396 REMARK 3 REMARK 3 TLS GROUP : 5 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 135 A 166 REMARK 3 ORIGIN FOR THE GROUP (A): -56.3776 25.9044 1.4097 REMARK 3 T TENSOR REMARK 3 T11: 0.3983 T22: 0.3211 REMARK 3 T33: 0.3831 T12: 0.0574 REMARK 3 T13: 0.0173 T23: -0.0240 REMARK 3 L TENSOR REMARK 3 L11: 1.7517 L22: 0.8367 REMARK 3 L33: 1.8846 L12: -0.2618 REMARK 3 L13: 0.0957 L23: -0.2759 REMARK 3 S TENSOR REMARK 3 S11: -0.0453 S12: 0.0067 S13: 0.1757 REMARK 3 S21: -0.3725 S22: 0.1014 S23: -0.0854 REMARK 3 S31: -0.1467 S32: -0.1688 S33: -0.0561 REMARK 3 REMARK 3 TLS GROUP : 6 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 167 A 197 REMARK 3 ORIGIN FOR THE GROUP (A): -80.4191 2.7922 12.0183 REMARK 3 T TENSOR REMARK 3 T11: 0.0165 T22: 0.4050 REMARK 3 T33: 1.7255 T12: 0.1713 REMARK 3 T13: 0.3388 T23: 0.6161 REMARK 3 L TENSOR REMARK 3 L11: 7.7851 L22: 9.3625 REMARK 3 L33: 2.0647 L12: 7.3807 REMARK 3 L13: 0.1585 L23: 0.7767 REMARK 3 S TENSOR REMARK 3 S11: -0.3966 S12: -1.2481 S13: -2.5986 REMARK 3 S21: 0.1128 S22: -0.0998 S23: 0.2371 REMARK 3 S31: 0.0859 S32: -0.3100 S33: 0.4963 REMARK 3 REMARK 3 TLS GROUP : 7 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 198 A 251 REMARK 3 ORIGIN FOR THE GROUP (A): -68.8031 16.4844 -1.2493 REMARK 3 T TENSOR REMARK 3 T11: 0.3005 T22: 0.3968 REMARK 3 T33: 0.2844 T12: 0.0718 REMARK 3 T13: 0.0056 T23: -0.0193 REMARK 3 L TENSOR REMARK 3 L11: 2.8716 L22: 1.2234 REMARK 3 L33: 1.1209 L12: 0.5040 REMARK 3 L13: -0.7343 L23: -0.2293 REMARK 3 S TENSOR REMARK 3 S11: -0.1104 S12: 0.1626 S13: -0.0082 REMARK 3 S21: -0.0652 S22: 0.0338 S23: 0.1764 REMARK 3 S31: -0.0538 S32: -0.2536 S33: 0.0766 REMARK 3 REMARK 3 TLS GROUP : 8 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 252 A 293 REMARK 3 ORIGIN FOR THE GROUP (A): -56.9699 17.2739 -9.8248 REMARK 3 T TENSOR REMARK 3 T11: 0.3218 T22: 0.3674 REMARK 3 T33: 0.2986 T12: 0.0706 REMARK 3 T13: 0.0287 T23: 0.0213 REMARK 3 L TENSOR REMARK 3 L11: 2.1767 L22: 1.5440 REMARK 3 L33: 0.9870 L12: 0.7026 REMARK 3 L13: 0.1305 L23: 1.0588 REMARK 3 S TENSOR REMARK 3 S11: 0.0547 S12: 0.1960 S13: -0.0845 REMARK 3 S21: -0.1457 S22: -0.0362 S23: 0.0063 REMARK 3 S31: -0.0984 S32: -0.2966 S33: -0.0186 REMARK 3 REMARK 3 TLS GROUP : 9 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 294 A 308 REMARK 3 ORIGIN FOR THE GROUP (A): -52.4605 14.7361 -7.7554 REMARK 3 T TENSOR REMARK 3 T11: 0.3230 T22: 0.3244 REMARK 3 T33: 0.2824 T12: 0.0487 REMARK 3 T13: 0.0124 T23: -0.0330 REMARK 3 L TENSOR REMARK 3 L11: 10.5537 L22: 1.7398 REMARK 3 L33: 2.0166 L12: 2.2736 REMARK 3 L13: -1.3041 L23: -0.5971 REMARK 3 S TENSOR REMARK 3 S11: 0.1755 S12: -0.0509 S13: -0.0839 REMARK 3 S21: -0.1254 S22: -0.1735 S23: -0.0950 REMARK 3 S31: -0.1342 S32: -0.0420 S33: -0.0020 REMARK 3 REMARK 3 TLS GROUP : 10 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 309 A 332 REMARK 3 ORIGIN FOR THE GROUP (A): -84.1460 19.0611 4.2397 REMARK 3 T TENSOR REMARK 3 T11: 0.1465 T22: 0.5074 REMARK 3 T33: 0.3115 T12: 0.0916 REMARK 3 T13: 0.0161 T23: 0.0116 REMARK 3 L TENSOR REMARK 3 L11: 9.8367 L22: 4.1606 REMARK 3 L33: 7.1218 L12: 2.1869 REMARK 3 L13: -5.4167 L23: -2.0041 REMARK 3 S TENSOR REMARK 3 S11: -0.0657 S12: 0.5032 S13: 0.2844 REMARK 3 S21: -0.0603 S22: 0.2497 S23: 0.3756 REMARK 3 S31: 0.0600 S32: -0.8297 S33: -0.1840 REMARK 3 REMARK 3 TLS GROUP : 11 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 333 A 371 REMARK 3 ORIGIN FOR THE GROUP (A): -78.9988 24.7425 8.1977 REMARK 3 T TENSOR REMARK 3 T11: 0.1787 T22: 0.4042 REMARK 3 T33: 0.3981 T12: 0.1258 REMARK 3 T13: 0.0014 T23: -0.1168 REMARK 3 L TENSOR REMARK 3 L11: 6.5456 L22: 1.7706 REMARK 3 L33: 2.9169 L12: 0.2819 REMARK 3 L13: -0.9931 L23: -1.1215 REMARK 3 S TENSOR REMARK 3 S11: 0.0157 S12: -0.0538 S13: 0.7609 REMARK 3 S21: 0.0159 S22: -0.1193 S23: 0.1734 REMARK 3 S31: -0.3140 S32: -0.4941 S33: 0.1036 REMARK 3 REMARK 3 TLS GROUP : 12 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 2 B 25 REMARK 3 ORIGIN FOR THE GROUP (A): -26.6890 18.5563 7.6845 REMARK 3 T TENSOR REMARK 3 T11: 0.3562 T22: 0.3651 REMARK 3 T33: 0.2751 T12: -0.0488 REMARK 3 T13: 0.0231 T23: -0.0051 REMARK 3 L TENSOR REMARK 3 L11: 2.7170 L22: 4.7584 REMARK 3 L33: 3.1743 L12: -0.1376 REMARK 3 L13: 0.4996 L23: 1.2431 REMARK 3 S TENSOR REMARK 3 S11: 0.0652 S12: 0.3523 S13: 0.1336 REMARK 3 S21: -0.5140 S22: 0.0577 S23: -0.2923 REMARK 3 S31: -0.3375 S32: 0.3569 S33: -0.1228 REMARK 3 REMARK 3 TLS GROUP : 13 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 26 B 32 REMARK 3 ORIGIN FOR THE GROUP (A): -26.1756 23.9057 7.4493 REMARK 3 T TENSOR REMARK 3 T11: 0.3634 T22: 0.4119 REMARK 3 T33: 0.3244 T12: -0.0645 REMARK 3 T13: 0.0127 T23: 0.0387 REMARK 3 L TENSOR REMARK 3 L11: 0.8068 L22: 11.4530 REMARK 3 L33: 4.2458 L12: 1.2274 REMARK 3 L13: 1.3290 L23: 4.0496 REMARK 3 S TENSOR REMARK 3 S11: -0.3168 S12: 0.2654 S13: 0.3663 REMARK 3 S21: -0.8912 S22: -0.0999 S23: 0.3029 REMARK 3 S31: -0.8344 S32: 0.0292 S33: 0.4167 REMARK 3 REMARK 3 TLS GROUP : 14 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 33 B 69 REMARK 3 ORIGIN FOR THE GROUP (A): -33.5026 7.9405 21.9203 REMARK 3 T TENSOR REMARK 3 T11: 0.3420 T22: 0.3300 REMARK 3 T33: 0.3340 T12: -0.0331 REMARK 3 T13: -0.0015 T23: -0.0129 REMARK 3 L TENSOR REMARK 3 L11: 0.9250 L22: 0.1539 REMARK 3 L33: 1.3966 L12: 0.2345 REMARK 3 L13: -0.2864 L23: 0.1378 REMARK 3 S TENSOR REMARK 3 S11: 0.0609 S12: 0.0187 S13: -0.1089 REMARK 3 S21: -0.0141 S22: 0.0618 S23: -0.0783 REMARK 3 S31: 0.0327 S32: -0.0145 S33: -0.1227 REMARK 3 REMARK 3 TLS GROUP : 15 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 70 B 97 REMARK 3 ORIGIN FOR THE GROUP (A): -43.6131 17.4818 21.2768 REMARK 3 T TENSOR REMARK 3 T11: 0.3485 T22: 0.3391 REMARK 3 T33: 0.2926 T12: -0.0042 REMARK 3 T13: -0.0015 T23: -0.0187 REMARK 3 L TENSOR REMARK 3 L11: 1.5991 L22: 1.1063 REMARK 3 L33: 2.0695 L12: 0.0807 REMARK 3 L13: -0.0692 L23: -0.6378 REMARK 3 S TENSOR REMARK 3 S11: 0.0257 S12: -0.0140 S13: 0.1918 REMARK 3 S21: 0.0533 S22: -0.0062 S23: 0.0287 REMARK 3 S31: -0.2657 S32: -0.1894 S33: -0.0195 REMARK 3 REMARK 3 TLS GROUP : 16 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 98 B 136 REMARK 3 ORIGIN FOR THE GROUP (A): -44.3061 1.6682 40.6996 REMARK 3 T TENSOR REMARK 3 T11: 0.3388 T22: 0.3894 REMARK 3 T33: 0.2432 T12: -0.0744 REMARK 3 T13: 0.0020 T23: 0.0139 REMARK 3 L TENSOR REMARK 3 L11: 4.2776 L22: 1.1653 REMARK 3 L33: 2.2780 L12: 1.2263 REMARK 3 L13: 1.2957 L23: 0.7303 REMARK 3 S TENSOR REMARK 3 S11: 0.1101 S12: -0.2955 S13: -0.1895 REMARK 3 S21: 0.1729 S22: -0.1109 S23: 0.0660 REMARK 3 S31: 0.2135 S32: -0.3916 S33: 0.0008 REMARK 3 REMARK 3 TLS GROUP : 17 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 137 B 189 REMARK 3 ORIGIN FOR THE GROUP (A): -34.4548 10.2875 13.6738 REMARK 3 T TENSOR REMARK 3 T11: 0.3541 T22: 0.3439 REMARK 3 T33: 0.3433 T12: -0.0204 REMARK 3 T13: -0.0217 T23: -0.0293 REMARK 3 L TENSOR REMARK 3 L11: 1.3058 L22: 0.8092 REMARK 3 L33: 2.0394 L12: -0.1378 REMARK 3 L13: -0.2158 L23: 0.1584 REMARK 3 S TENSOR REMARK 3 S11: -0.0039 S12: 0.1233 S13: -0.0454 REMARK 3 S21: -0.1151 S22: 0.0101 S23: -0.0772 REMARK 3 S31: 0.0527 S32: 0.0097 S33: -0.0063 REMARK 3 REMARK 3 TLS GROUP : 18 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 190 B 213 REMARK 3 ORIGIN FOR THE GROUP (A): -20.8368 9.4604 3.9710 REMARK 3 T TENSOR REMARK 3 T11: 0.3195 T22: 0.3968 REMARK 3 T33: 0.3197 T12: -0.0267 REMARK 3 T13: 0.0719 T23: -0.0733 REMARK 3 L TENSOR REMARK 3 L11: 1.2276 L22: 0.8585 REMARK 3 L33: 4.1488 L12: 0.2257 REMARK 3 L13: 0.1743 L23: -0.1632 REMARK 3 S TENSOR REMARK 3 S11: -0.0060 S12: 0.2703 S13: -0.0743 REMARK 3 S21: -0.3396 S22: 0.0477 S23: -0.2544 REMARK 3 S31: -0.0562 S32: 0.3041 S33: -0.0417 REMARK 3 REMARK 3 TLS GROUP : 19 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 214 B 249 REMARK 3 ORIGIN FOR THE GROUP (A): -38.3077 -0.3183 19.4434 REMARK 3 T TENSOR REMARK 3 T11: 0.3098 T22: 0.3425 REMARK 3 T33: 0.3200 T12: -0.0220 REMARK 3 T13: -0.0314 T23: -0.0069 REMARK 3 L TENSOR REMARK 3 L11: 2.4476 L22: 0.6258 REMARK 3 L33: 1.3515 L12: 0.3880 REMARK 3 L13: -0.7759 L23: 0.1578 REMARK 3 S TENSOR REMARK 3 S11: -0.0311 S12: -0.1010 S13: -0.1313 REMARK 3 S21: 0.0559 S22: 0.0252 S23: -0.0698 REMARK 3 S31: 0.1682 S32: -0.0238 S33: 0.0059 REMARK 3 REMARK 3 TLS GROUP : 20 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 250 B 286 REMARK 3 ORIGIN FOR THE GROUP (A): -44.2686 -5.2646 17.5239 REMARK 3 T TENSOR REMARK 3 T11: 0.3157 T22: 0.3220 REMARK 3 T33: 0.3148 T12: -0.0453 REMARK 3 T13: -0.0176 T23: -0.0098 REMARK 3 L TENSOR REMARK 3 L11: 3.1772 L22: 1.0022 REMARK 3 L33: 0.8660 L12: 0.0681 REMARK 3 L13: -0.5441 L23: 0.2596 REMARK 3 S TENSOR REMARK 3 S11: -0.0196 S12: 0.0233 S13: -0.3026 REMARK 3 S21: -0.0482 S22: 0.0078 S23: -0.1013 REMARK 3 S31: 0.1464 S32: -0.0731 S33: 0.0118 REMARK 3 REMARK 3 TLS GROUP : 21 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 287 B 307 REMARK 3 ORIGIN FOR THE GROUP (A): -51.7580 -5.8334 19.7260 REMARK 3 T TENSOR REMARK 3 T11: 0.3048 T22: 0.3127 REMARK 3 T33: 0.2939 T12: -0.0524 REMARK 3 T13: 0.0023 T23: -0.0065 REMARK 3 L TENSOR REMARK 3 L11: 3.5472 L22: 1.3275 REMARK 3 L33: 1.9727 L12: 0.8899 REMARK 3 L13: -0.2706 L23: 0.6293 REMARK 3 S TENSOR REMARK 3 S11: 0.0778 S12: -0.1231 S13: -0.1241 REMARK 3 S21: 0.1212 S22: -0.0654 S23: 0.0573 REMARK 3 S31: 0.0732 S32: -0.3662 S33: -0.0124 REMARK 3 REMARK 3 TLS GROUP : 22 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 308 B 334 REMARK 3 ORIGIN FOR THE GROUP (A): -20.1465 6.8379 17.9403 REMARK 3 T TENSOR REMARK 3 T11: 0.3039 T22: 0.3761 REMARK 3 T33: 0.3049 T12: 0.0144 REMARK 3 T13: -0.0163 T23: -0.0644 REMARK 3 L TENSOR REMARK 3 L11: 3.5629 L22: 4.6029 REMARK 3 L33: 3.6776 L12: 1.6133 REMARK 3 L13: -0.7882 L23: -1.1151 REMARK 3 S TENSOR REMARK 3 S11: 0.0177 S12: -0.0081 S13: -0.2485 REMARK 3 S21: 0.0027 S22: 0.0017 S23: -0.3227 REMARK 3 S31: 0.0720 S32: 0.2568 S33: -0.0194 REMARK 3 REMARK 3 TLS GROUP : 23 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 335 B 369 REMARK 3 ORIGIN FOR THE GROUP (A): -23.2239 13.5809 22.4263 REMARK 3 T TENSOR REMARK 3 T11: 0.3308 T22: 0.3446 REMARK 3 T33: 0.3173 T12: -0.0082 REMARK 3 T13: -0.0011 T23: -0.0388 REMARK 3 L TENSOR REMARK 3 L11: 2.4906 L22: 1.0099 REMARK 3 L33: 3.0657 L12: 0.2514 REMARK 3 L13: -0.3822 L23: -0.2735 REMARK 3 S TENSOR REMARK 3 S11: -0.0127 S12: -0.0137 S13: -0.1052 REMARK 3 S21: -0.0040 S22: 0.0511 S23: -0.1748 REMARK 3 S31: -0.0762 S32: 0.2181 S33: -0.0385 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS U VALUES : WITH TLS ADDED REMARK 4 REMARK 4 4YSH COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 24-MAR-15. REMARK 100 THE DEPOSITION ID IS D_1000207522. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 01-FEB-14 REMARK 200 TEMPERATURE (KELVIN) : 95 REMARK 200 PH : 4.7 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : PHOTON FACTORY REMARK 200 BEAMLINE : AR-NE3A REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.000 REMARK 200 MONOCHROMATOR : NUMERICAL LINK TYPE SI(111) REMARK 200 DOUBLE CRYSTAL MONOCHROMATOR REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 270 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 48899 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.200 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.6 REMARK 200 DATA REDUNDANCY : 20.60 REMARK 200 R MERGE (I) : 0.09600 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 11.5000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.20 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.28 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.7 REMARK 200 DATA REDUNDANCY IN SHELL : 22.20 REMARK 200 R MERGE FOR SHELL (I) : 0.41700 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 10.50 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP 10.2.35 REMARK 200 STARTING MODEL: PDB 1RYI REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 57.41 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.89 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M PHOSPHATE-CITRATE BUFFER, 7% 2 REMARK 280 -PROPANOL, 0.4 M LISO4, PH 4.7, VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 65 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+2/3 REMARK 290 3555 -X+Y,-X,Z+1/3 REMARK 290 4555 -X,-Y,Z+1/2 REMARK 290 5555 Y,-X+Y,Z+1/6 REMARK 290 6555 X-Y,X,Z+5/6 REMARK 290 7555 Y,X,-Z+2/3 REMARK 290 8555 X-Y,-Y,-Z REMARK 290 9555 -X,-X+Y,-Z+1/3 REMARK 290 10555 -Y,-X,-Z+1/6 REMARK 290 11555 -X+Y,Y,-Z+1/2 REMARK 290 12555 X,X-Y,-Z+5/6 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 275.63733 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 137.81867 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 206.72800 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 68.90933 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 344.54667 REMARK 290 SMTRY1 7 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 7 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 275.63733 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 9 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 9 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 9 0.000000 0.000000 -1.000000 137.81867 REMARK 290 SMTRY1 10 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 10 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 10 0.000000 0.000000 -1.000000 68.90933 REMARK 290 SMTRY1 11 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 11 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 11 0.000000 0.000000 -1.000000 206.72800 REMARK 290 SMTRY1 12 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 12 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 12 0.000000 0.000000 -1.000000 344.54667 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 THE ASSEMBLY REPRESENTED IN THIS ENTRY HAS REGULAR REMARK 300 CYCLIC POINT SYMMETRY (SCHOENFLIES SYMBOL = C2). REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 14770 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 53290 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -144.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 LYS A 373 REMARK 465 VAL A 374 REMARK 465 GLY A 375 REMARK 465 VAL A 376 REMARK 465 GLU A 377 REMARK 465 MET B 1 REMARK 465 ILE B 371 REMARK 465 GLY B 372 REMARK 465 LYS B 373 REMARK 465 VAL B 374 REMARK 465 GLY B 375 REMARK 465 VAL B 376 REMARK 465 GLU B 377 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 LEU A 95 CA - CB - CG ANGL. DEV. = 15.0 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ARG A 26 21.06 -78.18 REMARK 500 SER A 57 -92.42 -63.33 REMARK 500 THR A 58 -53.62 -146.82 REMARK 500 SER A 59 129.11 -173.12 REMARK 500 SER A 60 94.95 74.86 REMARK 500 GLU A 92 65.65 -115.99 REMARK 500 ALA A 130 -9.81 -58.02 REMARK 500 GLU A 134 76.31 57.01 REMARK 500 ALA A 141 94.48 -48.81 REMARK 500 SER A 185 32.63 -72.70 REMARK 500 ASN A 250 97.58 58.31 REMARK 500 HIS B 3 -6.07 80.02 REMARK 500 LEU B 50 71.08 -100.08 REMARK 500 GLU B 140 -36.70 -36.02 REMARK 500 ALA B 141 52.29 -60.60 REMARK 500 SER B 185 57.02 -110.06 REMARK 500 SER B 187 161.02 58.35 REMARK 500 SER B 188 10.57 57.10 REMARK 500 SER B 224 33.23 -89.88 REMARK 500 ASN B 250 -65.83 -137.79 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 THR B 2 HIS B 3 -149.65 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH B 614 DISTANCE = 7.85 ANGSTROMS REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue FAD A 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 402 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GLY B 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GLY B 402 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue FAD B 403 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue IPA B 405 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 B 406 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 B 407 DBREF 4YSH A 1 377 UNP Q5L2C2 Q5L2C2_GEOKA 1 377 DBREF 4YSH B 1 377 UNP Q5L2C2 Q5L2C2_GEOKA 1 377 SEQADV 4YSH A UNP Q5L2C2 ALA 139 DELETION SEQADV 4YSH B UNP Q5L2C2 ALA 139 DELETION SEQRES 1 A 376 MET THR HIS ARG TYR ASP VAL ALA ILE VAL GLY GLY GLY SEQRES 2 A 376 VAL ILE GLY ALA ALA ILE GLY PHE GLU LEU ALA LYS ARG SEQRES 3 A 376 ARG HIS ARG VAL ALA ILE PHE GLU LYS GLY THR MET GLY SEQRES 4 A 376 SER GLY ALA SER SER ALA ALA ALA GLY MET LEU GLY ALA SEQRES 5 A 376 GLN SER GLU PHE SER THR SER SER PRO LEU VAL PRO LEU SEQRES 6 A 376 ALA LEU GLN SER ARG ALA LEU MET PRO ALA LEU ALA GLU SEQRES 7 A 376 GLU LEU ARG GLU ARG THR GLY ILE ASP ILE GLY LEU VAL SEQRES 8 A 376 GLU LYS GLY LEU ILE LYS LEU ALA THR THR GLU GLU GLU SEQRES 9 A 376 ALA ASP ASP LEU TYR ARG HIS TYR THR PHE TRP ARG GLY SEQRES 10 A 376 ILE GLY GLU PRO VAL GLN TRP LEU THR LYS GLY GLU ALA SEQRES 11 A 376 LEU GLU MET GLU PRO ARG LEU ALA GLU ALA LEU ALA GLY SEQRES 12 A 376 ALA MET TYR ILE PRO GLY ASP GLY GLN VAL SER ALA PRO SEQRES 13 A 376 ASP LEU ALA ALA ALA LEU ALA TYR ALA ALA ALA SER ALA SEQRES 14 A 376 GLY ALA CYS LEU TYR GLU TYR THR GLU VAL PHE ASP ILE SEQRES 15 A 376 ARG SER ASP SER SER GLY HIS VAL LEU ASP THR THR GLY SEQRES 16 A 376 GLY THR PHE ALA ALA GLU ALA VAL VAL ILE ALA SER GLY SEQRES 17 A 376 ALA TRP ALA ALA ARG LEU GLY ALA ARG VAL GLY LEU SER SEQRES 18 A 376 LEU SER VAL TYR PRO VAL LYS GLY GLU CYS VAL MET VAL SEQRES 19 A 376 ARG ALA PRO VAL PRO LEU LEU GLN THR THR VAL PHE ALA SEQRES 20 A 376 LYS ASN GLY CYS TYR ILE VAL PRO LYS SER GLY ASN ARG SEQRES 21 A 376 LEU LEU ILE GLY ALA THR SER THR PRO GLY THR PHE ASP SEQRES 22 A 376 ARG ARG VAL SER ALA GLY GLY VAL MET ASN LEU LEU HIS SEQRES 23 A 376 ARG ALA ALA HIS LEU VAL PRO ASP ILE GLU GLN ALA GLU SEQRES 24 A 376 TRP VAL ALA SER TRP SER GLY ILE ARG PRO GLN THR GLU SEQRES 25 A 376 ASP GLY LEU PRO TYR LEU GLY GLU HIS PRO GLU ARG ARG SEQRES 26 A 376 GLY LEU PHE VAL ALA ALA GLY HIS TYR ARG ASN GLY ILE SEQRES 27 A 376 LEU LEU SER PRO LEU THR GLY LEU LEU VAL ALA ASP LEU SEQRES 28 A 376 VAL GLU ARG LYS GLU THR ALA PHE ASP LEU ALA PRO PHE SEQRES 29 A 376 SER LEU THR ARG HIS ILE GLY LYS VAL GLY VAL GLU SEQRES 1 B 376 MET THR HIS ARG TYR ASP VAL ALA ILE VAL GLY GLY GLY SEQRES 2 B 376 VAL ILE GLY ALA ALA ILE GLY PHE GLU LEU ALA LYS ARG SEQRES 3 B 376 ARG HIS ARG VAL ALA ILE PHE GLU LYS GLY THR MET GLY SEQRES 4 B 376 SER GLY ALA SER SER ALA ALA ALA GLY MET LEU GLY ALA SEQRES 5 B 376 GLN SER GLU PHE SER THR SER SER PRO LEU VAL PRO LEU SEQRES 6 B 376 ALA LEU GLN SER ARG ALA LEU MET PRO ALA LEU ALA GLU SEQRES 7 B 376 GLU LEU ARG GLU ARG THR GLY ILE ASP ILE GLY LEU VAL SEQRES 8 B 376 GLU LYS GLY LEU ILE LYS LEU ALA THR THR GLU GLU GLU SEQRES 9 B 376 ALA ASP ASP LEU TYR ARG HIS TYR THR PHE TRP ARG GLY SEQRES 10 B 376 ILE GLY GLU PRO VAL GLN TRP LEU THR LYS GLY GLU ALA SEQRES 11 B 376 LEU GLU MET GLU PRO ARG LEU ALA GLU ALA LEU ALA GLY SEQRES 12 B 376 ALA MET TYR ILE PRO GLY ASP GLY GLN VAL SER ALA PRO SEQRES 13 B 376 ASP LEU ALA ALA ALA LEU ALA TYR ALA ALA ALA SER ALA SEQRES 14 B 376 GLY ALA CYS LEU TYR GLU TYR THR GLU VAL PHE ASP ILE SEQRES 15 B 376 ARG SER ASP SER SER GLY HIS VAL LEU ASP THR THR GLY SEQRES 16 B 376 GLY THR PHE ALA ALA GLU ALA VAL VAL ILE ALA SER GLY SEQRES 17 B 376 ALA TRP ALA ALA ARG LEU GLY ALA ARG VAL GLY LEU SER SEQRES 18 B 376 LEU SER VAL TYR PRO VAL LYS GLY GLU CYS VAL MET VAL SEQRES 19 B 376 ARG ALA PRO VAL PRO LEU LEU GLN THR THR VAL PHE ALA SEQRES 20 B 376 LYS ASN GLY CYS TYR ILE VAL PRO LYS SER GLY ASN ARG SEQRES 21 B 376 LEU LEU ILE GLY ALA THR SER THR PRO GLY THR PHE ASP SEQRES 22 B 376 ARG ARG VAL SER ALA GLY GLY VAL MET ASN LEU LEU HIS SEQRES 23 B 376 ARG ALA ALA HIS LEU VAL PRO ASP ILE GLU GLN ALA GLU SEQRES 24 B 376 TRP VAL ALA SER TRP SER GLY ILE ARG PRO GLN THR GLU SEQRES 25 B 376 ASP GLY LEU PRO TYR LEU GLY GLU HIS PRO GLU ARG ARG SEQRES 26 B 376 GLY LEU PHE VAL ALA ALA GLY HIS TYR ARG ASN GLY ILE SEQRES 27 B 376 LEU LEU SER PRO LEU THR GLY LEU LEU VAL ALA ASP LEU SEQRES 28 B 376 VAL GLU ARG LYS GLU THR ALA PHE ASP LEU ALA PRO PHE SEQRES 29 B 376 SER LEU THR ARG HIS ILE GLY LYS VAL GLY VAL GLU HET FAD A 401 53 HET SO4 A 402 5 HET GLY B 401 5 HET GLY B 402 5 HET FAD B 403 53 HET CL B 404 1 HET IPA B 405 4 HET SO4 B 406 5 HET SO4 B 407 5 HETNAM FAD FLAVIN-ADENINE DINUCLEOTIDE HETNAM SO4 SULFATE ION HETNAM GLY GLYCINE HETNAM CL CHLORIDE ION HETNAM IPA ISOPROPYL ALCOHOL HETSYN IPA 2-PROPANOL FORMUL 3 FAD 2(C27 H33 N9 O15 P2) FORMUL 4 SO4 3(O4 S 2-) FORMUL 5 GLY 2(C2 H5 N O2) FORMUL 8 CL CL 1- FORMUL 9 IPA C3 H8 O FORMUL 12 HOH *184(H2 O) HELIX 1 AA1 GLY A 13 ARG A 26 1 14 HELIX 2 AA2 GLY A 41 ALA A 46 1 6 HELIX 3 AA3 PRO A 61 GLY A 85 1 25 HELIX 4 AA4 THR A 101 THR A 113 1 13 HELIX 5 AA5 THR A 113 ILE A 118 1 6 HELIX 6 AA6 GLY A 128 MET A 133 1 6 HELIX 7 AA7 SER A 155 ALA A 170 1 16 HELIX 8 AA8 SER A 208 ALA A 210 5 3 HELIX 9 AA9 TRP A 211 ARG A 218 1 8 HELIX 10 AB1 SER A 278 VAL A 293 1 16 HELIX 11 AB2 PRO A 294 ALA A 299 5 6 HELIX 12 AB3 ASN A 337 GLU A 354 1 18 HELIX 13 AB4 LEU A 362 SER A 366 5 5 HELIX 14 AB5 GLY B 13 ARG B 26 1 14 HELIX 15 AB6 GLY B 41 ALA B 46 1 6 HELIX 16 AB7 LEU B 62 GLY B 85 1 24 HELIX 17 AB8 THR B 101 GLY B 117 1 17 HELIX 18 AB9 THR B 126 GLU B 134 1 9 HELIX 19 AC1 SER B 155 ALA B 170 1 16 HELIX 20 AC2 SER B 208 ALA B 210 5 3 HELIX 21 AC3 TRP B 211 VAL B 219 1 9 HELIX 22 AC4 SER B 278 VAL B 293 1 16 HELIX 23 AC5 PRO B 294 ALA B 299 5 6 HELIX 24 AC6 ASN B 337 GLU B 354 1 18 HELIX 25 AC7 LEU B 362 SER B 366 5 5 SHEET 1 AA1 6 CYS A 173 TYR A 175 0 SHEET 2 AA1 6 VAL A 30 PHE A 33 1 N ILE A 32 O TYR A 175 SHEET 3 AA1 6 ARG A 4 VAL A 10 1 N ILE A 9 O PHE A 33 SHEET 4 AA1 6 GLY A 197 ILE A 206 1 O VAL A 205 N VAL A 10 SHEET 5 AA1 6 HIS A 190 THR A 194 -1 N LEU A 192 O PHE A 199 SHEET 6 AA1 6 VAL A 180 ARG A 184 -1 N ARG A 184 O VAL A 191 SHEET 1 AA2 6 CYS A 173 TYR A 175 0 SHEET 2 AA2 6 VAL A 30 PHE A 33 1 N ILE A 32 O TYR A 175 SHEET 3 AA2 6 ARG A 4 VAL A 10 1 N ILE A 9 O PHE A 33 SHEET 4 AA2 6 GLY A 197 ILE A 206 1 O VAL A 205 N VAL A 10 SHEET 5 AA2 6 LEU A 328 ALA A 332 1 O PHE A 329 N VAL A 204 SHEET 6 AA2 6 TYR A 318 GLU A 321 -1 N TYR A 318 O ALA A 332 SHEET 1 AA3 8 GLN A 123 LEU A 125 0 SHEET 2 AA3 8 GLY A 144 ILE A 148 -1 O ALA A 145 N LEU A 125 SHEET 3 AA3 8 LEU A 95 ALA A 99 -1 N LEU A 95 O ILE A 148 SHEET 4 AA3 8 THR A 245 ALA A 248 1 O PHE A 247 N LEU A 98 SHEET 5 AA3 8 TYR A 253 LYS A 257 -1 O ILE A 254 N VAL A 246 SHEET 6 AA3 8 ARG A 261 GLY A 265 -1 O LEU A 263 N VAL A 255 SHEET 7 AA3 8 VAL A 225 ARG A 236 -1 N VAL A 233 O ILE A 264 SHEET 8 AA3 8 THR A 269 PRO A 270 -1 O THR A 269 N LYS A 229 SHEET 1 AA4 8 GLN A 123 LEU A 125 0 SHEET 2 AA4 8 GLY A 144 ILE A 148 -1 O ALA A 145 N LEU A 125 SHEET 3 AA4 8 LEU A 95 ALA A 99 -1 N LEU A 95 O ILE A 148 SHEET 4 AA4 8 THR A 245 ALA A 248 1 O PHE A 247 N LEU A 98 SHEET 5 AA4 8 TYR A 253 LYS A 257 -1 O ILE A 254 N VAL A 246 SHEET 6 AA4 8 ARG A 261 GLY A 265 -1 O LEU A 263 N VAL A 255 SHEET 7 AA4 8 VAL A 225 ARG A 236 -1 N VAL A 233 O ILE A 264 SHEET 8 AA4 8 GLU A 300 THR A 312 -1 O GLU A 300 N ARG A 236 SHEET 1 AA5 6 CYS B 173 TYR B 175 0 SHEET 2 AA5 6 VAL B 30 PHE B 33 1 N ILE B 32 O TYR B 175 SHEET 3 AA5 6 ARG B 4 VAL B 10 1 N ILE B 9 O PHE B 33 SHEET 4 AA5 6 GLY B 197 ILE B 206 1 O VAL B 205 N ALA B 8 SHEET 5 AA5 6 HIS B 190 THR B 194 -1 N LEU B 192 O PHE B 199 SHEET 6 AA5 6 VAL B 180 ARG B 184 -1 N PHE B 181 O ASP B 193 SHEET 1 AA6 6 CYS B 173 TYR B 175 0 SHEET 2 AA6 6 VAL B 30 PHE B 33 1 N ILE B 32 O TYR B 175 SHEET 3 AA6 6 ARG B 4 VAL B 10 1 N ILE B 9 O PHE B 33 SHEET 4 AA6 6 GLY B 197 ILE B 206 1 O VAL B 205 N ALA B 8 SHEET 5 AA6 6 LEU B 328 ALA B 332 1 O PHE B 329 N VAL B 204 SHEET 6 AA6 6 TYR B 318 GLU B 321 -1 N TYR B 318 O ALA B 332 SHEET 1 AA7 8 GLN B 123 LEU B 125 0 SHEET 2 AA7 8 GLY B 144 ILE B 148 -1 O TYR B 147 N GLN B 123 SHEET 3 AA7 8 LEU B 95 ALA B 99 -1 N LEU B 95 O ILE B 148 SHEET 4 AA7 8 THR B 245 ALA B 248 1 O THR B 245 N ILE B 96 SHEET 5 AA7 8 CYS B 252 LYS B 257 -1 O ILE B 254 N VAL B 246 SHEET 6 AA7 8 ARG B 261 PRO B 270 -1 O LEU B 263 N VAL B 255 SHEET 7 AA7 8 TYR B 226 ARG B 236 -1 N VAL B 233 O ILE B 264 SHEET 8 AA7 8 GLU B 300 GLN B 311 -1 O GLU B 300 N ARG B 236 CISPEP 1 SER A 59 SER A 60 0 -8.28 CISPEP 2 GLY A 265 ALA A 266 0 -3.42 CISPEP 3 ASN B 250 GLY B 251 0 8.14 CISPEP 4 GLY B 265 ALA B 266 0 -3.06 SITE 1 AC1 35 GLY A 11 GLY A 13 VAL A 14 ILE A 15 SITE 2 AC1 35 PHE A 33 GLU A 34 LYS A 35 GLY A 41 SITE 3 AC1 35 ALA A 42 SER A 43 ALA A 46 ALA A 47 SITE 4 AC1 35 GLY A 48 MET A 49 THR A 178 VAL A 180 SITE 5 AC1 35 ALA A 207 SER A 208 GLY A 209 TRP A 211 SITE 6 AC1 35 CYS A 232 TYR A 253 ARG A 309 HIS A 334 SITE 7 AC1 35 TYR A 335 ARG A 336 ASN A 337 GLY A 338 SITE 8 AC1 35 ILE A 339 LEU A 340 HOH A 501 HOH A 503 SITE 9 AC1 35 HOH A 506 HOH A 507 HOH A 518 SITE 1 AC2 4 ALA A 266 THR A 267 SER A 268 ARG A 288 SITE 1 AC3 6 GLY B 251 TYR B 253 ALA B 266 ARG B 336 SITE 2 AC3 6 GLY B 402 HOH B 529 SITE 1 AC4 6 GLU B 55 TYR B 253 ARG B 309 ARG B 336 SITE 2 AC4 6 GLY B 401 FAD B 403 SITE 1 AC5 36 VAL B 10 GLY B 11 GLY B 13 VAL B 14 SITE 2 AC5 36 ILE B 15 PHE B 33 GLU B 34 LYS B 35 SITE 3 AC5 36 GLY B 41 ALA B 42 SER B 43 ALA B 46 SITE 4 AC5 36 ALA B 47 GLY B 48 MET B 49 THR B 178 SITE 5 AC5 36 GLU B 179 VAL B 180 SER B 208 TRP B 211 SITE 6 AC5 36 CYS B 232 TYR B 253 ARG B 309 HIS B 334 SITE 7 AC5 36 TYR B 335 ARG B 336 ASN B 337 GLY B 338 SITE 8 AC5 36 ILE B 339 LEU B 340 GLY B 402 HOH B 510 SITE 9 AC5 36 HOH B 518 HOH B 537 HOH B 545 HOH B 550 SITE 1 AC6 4 ALA B 18 GLU B 22 LYS B 25 PRO B 343 SITE 1 AC7 1 ARG B 218 SITE 1 AC8 3 THR B 267 SER B 268 ARG B 288 CRYST1 87.945 87.945 413.456 90.00 90.00 120.00 P 65 2 2 24 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.011371 0.006565 0.000000 0.00000 SCALE2 0.000000 0.013130 0.000000 0.00000 SCALE3 0.000000 0.000000 0.002419 0.00000