HEADER OXIDOREDUCTASE 17-MAR-15 4YT3 TITLE CYP106A2 COMPND MOL_ID: 1; COMPND 2 MOLECULE: CYTOCHROME P450(MEG); COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: STEROID 15-BETA-HYDROXYLASE,STEROID 15-BETA-MONOOXYGENASE; COMPND 5 EC: 1.14.99.-,1.14.15.8; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: BACILLUS MEGATERIUM; SOURCE 3 ORGANISM_TAXID: 1404; SOURCE 4 ATCC: 13368; SOURCE 5 GENE: CYP106A2; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: JM109; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PKKHC KEYWDS MONO-OXYGENASE, CYTOCHROME P450, 15-BETA-HYDROXYLASE, OXIDOREDUCTASE EXPDTA X-RAY DIFFRACTION AUTHOR S.JANOCHA,Y.CARIUS,R.BERNHARDT,C.R.D.LANCASTER REVDAT 4 10-JAN-24 4YT3 1 REMARK LINK REVDAT 3 12-JUN-19 4YT3 1 JRNL REVDAT 2 11-MAY-16 4YT3 1 JRNL REVDAT 1 24-FEB-16 4YT3 0 JRNL AUTH S.JANOCHA,Y.CARIUS,M.HUTTER,C.R.LANCASTER,R.BERNHARDT JRNL TITL CRYSTAL STRUCTURE OF CYP106A2 IN SUBSTRATE-FREE AND JRNL TITL 2 SUBSTRATE-BOUND FORM. JRNL REF CHEMBIOCHEM V. 17 852 2016 JRNL REFN ESSN 1439-7633 JRNL PMID 26864272 JRNL DOI 10.1002/CBIC.201500524 REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH S.BLEIF,F.HANNEMANN,M.LISUREK,J.P.VON KRIES,J.ZAPP, REMARK 1 AUTH 2 M.DIETZEN,I.ANTES,R.BERNHARDT REMARK 1 TITL IDENTIFICATION OF CYP106A2 AS A REGIO-SELECTIVE ALLYLIC REMARK 1 TITL 2 BACTERIAL DITERPENE HYDROXYLASE REMARK 1 REF CHEMBIOCHEM V. 12 576 2011 REMARK 1 REFN ISSN 1439-4227 REMARK 1 PMID 21271628 REMARK 1 DOI 10.1002/CBIC.201000404 REMARK 2 REMARK 2 RESOLUTION. 1.80 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0073 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.80 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 66.18 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 3 NUMBER OF REFLECTIONS : 75208 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.165 REMARK 3 R VALUE (WORKING SET) : 0.163 REMARK 3 FREE R VALUE : 0.199 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 3978 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.80 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.85 REMARK 3 REFLECTION IN BIN (WORKING SET) : 5571 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 100.0 REMARK 3 BIN R VALUE (WORKING SET) : 0.1980 REMARK 3 BIN FREE R VALUE SET COUNT : 283 REMARK 3 BIN FREE R VALUE : 0.2220 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 6221 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 94 REMARK 3 SOLVENT ATOMS : 533 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 25.39 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.52000 REMARK 3 B22 (A**2) : -0.54000 REMARK 3 B33 (A**2) : -0.04000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.14000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.114 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.111 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.080 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 2.548 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.962 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.947 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 6563 ; 0.018 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): 6309 ; 0.006 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 8934 ; 1.866 ; 1.992 REMARK 3 BOND ANGLES OTHERS (DEGREES): 14556 ; 1.235 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 799 ; 6.085 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 307 ;34.401 ;24.463 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 1174 ;14.844 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 42 ;18.818 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 995 ; 0.115 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 7328 ; 0.012 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 1458 ; 0.006 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 3129 ; 2.367 ; 2.222 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 3126 ; 2.355 ; 2.220 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 3904 ; 3.311 ; 3.310 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 3905 ; 3.310 ; 3.311 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 3434 ; 3.577 ; 2.603 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 3435 ; 3.577 ; 2.603 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 5016 ; 5.626 ; 3.722 REMARK 3 LONG RANGE B REFINED ATOMS (A**2): 7929 ; 7.262 ;18.354 REMARK 3 LONG RANGE B OTHER ATOMS (A**2): 7930 ; 7.263 ;18.357 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NCS TYPE: LOCAL REMARK 3 NUMBER OF DIFFERENT NCS PAIRS : 1 REMARK 3 GROUP CHAIN1 RANGE CHAIN2 RANGE COUNT RMS WEIGHT REMARK 3 1 A 4 410 B 4 410 23597 0.12 0.05 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 4YT3 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 17-MAR-15. REMARK 100 THE DEPOSITION ID IS D_1000207667. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 17-MAY-12 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 4.2 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : ID14-4 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9393 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : IMOSFLM 7.1.1 REMARK 200 DATA SCALING SOFTWARE : SCALA CCP4_3.3.21 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 79257 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.800 REMARK 200 RESOLUTION RANGE LOW (A) : 66.180 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 2.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 5.600 REMARK 200 R MERGE (I) : 0.15000 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 7.5000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.80 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.90 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 4.00 REMARK 200 R MERGE FOR SHELL (I) : 0.32000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 3.000 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP 12.02.08 REMARK 200 STARTING MODEL: 1F4T REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 44.16 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.22 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PEG 4000, AMMONIUM ACETATE, SODIUM REMARK 280 ACETATE TRIHYDRATE, PH 4.2, VAPOR DIFFUSION, TEMPERATURE 291K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 57.03000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 LYS A 2 REMARK 465 GLU A 3 REMARK 465 ARG A 68 REMARK 465 THR A 69 REMARK 465 THR A 70 REMARK 465 ILE A 71 REMARK 465 SER A 72 REMARK 465 VAL A 73 REMARK 465 GLY A 74 REMARK 465 THR A 75 REMARK 465 ASP A 76 REMARK 465 SER A 77 REMARK 465 GLU A 78 REMARK 465 GLU A 79 REMARK 465 GLY A 80 REMARK 465 SER A 81 REMARK 465 GLY A 132 REMARK 465 ASP A 177 REMARK 465 ARG A 178 REMARK 465 GLU A 179 REMARK 465 LYS A 180 REMARK 465 MET B 1 REMARK 465 LYS B 2 REMARK 465 GLU B 3 REMARK 465 LYS B 67 REMARK 465 ARG B 68 REMARK 465 THR B 69 REMARK 465 THR B 70 REMARK 465 ILE B 71 REMARK 465 SER B 72 REMARK 465 VAL B 73 REMARK 465 GLY B 74 REMARK 465 THR B 75 REMARK 465 ASP B 76 REMARK 465 SER B 77 REMARK 465 GLU B 78 REMARK 465 GLU B 79 REMARK 465 GLY B 80 REMARK 465 SER B 81 REMARK 465 ASP B 177 REMARK 465 ARG B 178 REMARK 465 GLU B 179 REMARK 465 LYS B 180 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 67 CG CD CE NZ REMARK 470 THR A 134 OG1 CG2 REMARK 470 PHE A 176 CG CD1 CD2 CE1 CE2 CZ REMARK 470 GLN A 181 CG CD OE1 NE2 REMARK 470 GLU A 182 CG CD OE1 OE2 REMARK 470 GLU A 183 CG CD OE1 OE2 REMARK 470 MET A 410 CG SD CE REMARK 470 VAL B 4 CG1 CG2 REMARK 470 ARG B 66 CG CD NE CZ NH1 NH2 REMARK 470 VAL B 82 CG1 CG2 REMARK 470 PHE B 176 CG CD1 CD2 CE1 CE2 CZ REMARK 470 GLN B 181 CG CD OE1 NE2 REMARK 470 GLU B 182 CG CD OE1 OE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 NZ LYS B 299 O HOH B 761 2.06 REMARK 500 O HOH B 718 O HOH B 737 2.07 REMARK 500 NZ LYS B 98 O HOH B 783 2.16 REMARK 500 NH1 ARG A 162 O HOH A 775 2.17 REMARK 500 O ARG A 339 O HOH A 831 2.17 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ASP A 33 CB - CG - OD1 ANGL. DEV. = 5.9 DEGREES REMARK 500 ASP A 33 CB - CG - OD2 ANGL. DEV. = -6.5 DEGREES REMARK 500 ARG A 97 NE - CZ - NH1 ANGL. DEV. = -4.0 DEGREES REMARK 500 ARG A 97 NE - CZ - NH2 ANGL. DEV. = 3.5 DEGREES REMARK 500 ASP B 33 CB - CG - OD1 ANGL. DEV. = 5.9 DEGREES REMARK 500 ASP B 33 CB - CG - OD2 ANGL. DEV. = -6.3 DEGREES REMARK 500 ASP B 42 CB - CG - OD1 ANGL. DEV. = 6.1 DEGREES REMARK 500 ARG B 288 NE - CZ - NH1 ANGL. DEV. = -3.1 DEGREES REMARK 500 ARG B 296 NE - CZ - NH1 ANGL. DEV. = 3.7 DEGREES REMARK 500 ARG B 362 NE - CZ - NH2 ANGL. DEV. = -3.2 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 33 63.61 -154.85 REMARK 500 GLU A 90 55.58 -95.12 REMARK 500 LEU A 142 -54.17 -147.42 REMARK 500 ASP B 33 60.00 -152.83 REMARK 500 GLU B 90 54.36 -93.22 REMARK 500 LEU B 142 -55.24 -145.91 REMARK 500 PHE B 354 132.39 -38.59 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 GLN A 181 GLU A 182 144.82 REMARK 500 GLU A 182 GLU A 183 148.95 REMARK 500 PRO B 175 PHE B 176 148.80 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 839 DISTANCE = 6.83 ANGSTROMS REMARK 525 HOH A 866 DISTANCE = 6.45 ANGSTROMS REMARK 525 HOH B 852 DISTANCE = 5.94 ANGSTROMS REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 HEM A 501 FE REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 355 SG REMARK 620 2 HEM A 501 NA 95.2 REMARK 620 3 HEM A 501 NB 85.6 89.5 REMARK 620 4 HEM A 501 NC 87.7 177.1 90.3 REMARK 620 5 HEM A 501 ND 97.5 90.4 176.9 89.6 REMARK 620 6 HOH A 822 O 171.1 86.7 85.7 90.4 91.2 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 HEM B 501 FE REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS B 355 SG REMARK 620 2 HEM B 501 NA 96.5 REMARK 620 3 HEM B 501 NB 85.1 90.8 REMARK 620 4 HEM B 501 NC 86.5 176.8 88.5 REMARK 620 5 HEM B 501 ND 97.9 88.8 177.0 91.8 REMARK 620 6 HOH B 808 O 172.8 85.1 87.9 91.7 89.2 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue HEM A 501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ACT A 502 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue HEM B 501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ACT B 502 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4XZO RELATED DB: PDB REMARK 900 4XZO CONTAINS THE SAME PROTEIN COMPLEXED WITH ITS SUBSTRATE ABIETIC REMARK 900 ACID. DBREF 4YT3 A 1 410 UNP Q06069 CPXM_BACME 1 410 DBREF 4YT3 B 1 410 UNP Q06069 CPXM_BACME 1 410 SEQRES 1 A 410 MET LYS GLU VAL ILE ALA VAL LYS GLU ILE THR ARG PHE SEQRES 2 A 410 LYS THR ARG THR GLU GLU PHE SER PRO TYR ALA TRP CYS SEQRES 3 A 410 LYS ARG MET LEU GLU ASN ASP PRO VAL SER TYR HIS GLU SEQRES 4 A 410 GLY THR ASP THR TRP ASN VAL PHE LYS TYR GLU ASP VAL SEQRES 5 A 410 LYS ARG VAL LEU SER ASP TYR LYS HIS PHE SER SER VAL SEQRES 6 A 410 ARG LYS ARG THR THR ILE SER VAL GLY THR ASP SER GLU SEQRES 7 A 410 GLU GLY SER VAL PRO GLU LYS ILE GLN ILE THR GLU SER SEQRES 8 A 410 ASP PRO PRO ASP HIS ARG LYS ARG ARG SER LEU LEU ALA SEQRES 9 A 410 ALA ALA PHE THR PRO ARG SER LEU GLN ASN TRP GLU PRO SEQRES 10 A 410 ARG ILE GLN GLU ILE ALA ASP GLU LEU ILE GLY GLN MET SEQRES 11 A 410 ASP GLY GLY THR GLU ILE ASP ILE VAL ALA SER LEU ALA SEQRES 12 A 410 SER PRO LEU PRO ILE ILE VAL MET ALA ASP LEU MET GLY SEQRES 13 A 410 VAL PRO SER LYS ASP ARG LEU LEU PHE LYS LYS TRP VAL SEQRES 14 A 410 ASP THR LEU PHE LEU PRO PHE ASP ARG GLU LYS GLN GLU SEQRES 15 A 410 GLU VAL ASP LYS LEU LYS GLN VAL ALA ALA LYS GLU TYR SEQRES 16 A 410 TYR GLN TYR LEU TYR PRO ILE VAL VAL GLN LYS ARG LEU SEQRES 17 A 410 ASN PRO ALA ASP ASP ILE ILE SER ASP LEU LEU LYS SER SEQRES 18 A 410 GLU VAL ASP GLY GLU MET PHE THR ASP ASP GLU VAL VAL SEQRES 19 A 410 ARG THR THR MET LEU ILE LEU GLY ALA GLY VAL GLU THR SEQRES 20 A 410 THR SER HIS LEU LEU ALA ASN SER PHE TYR SER LEU LEU SEQRES 21 A 410 TYR ASP ASP LYS GLU VAL TYR GLN GLU LEU HIS GLU ASN SEQRES 22 A 410 LEU ASP LEU VAL PRO GLN ALA VAL GLU GLU MET LEU ARG SEQRES 23 A 410 PHE ARG PHE ASN LEU ILE LYS LEU ASP ARG THR VAL LYS SEQRES 24 A 410 GLU ASP ASN ASP LEU LEU GLY VAL GLU LEU LYS GLU GLY SEQRES 25 A 410 ASP SER VAL VAL VAL TRP MET SER ALA ALA ASN MET ASP SEQRES 26 A 410 GLU GLU MET PHE GLU ASP PRO PHE THR LEU ASN ILE HIS SEQRES 27 A 410 ARG PRO ASN ASN LYS LYS HIS LEU THR PHE GLY ASN GLY SEQRES 28 A 410 PRO HIS PHE CYS LEU GLY ALA PRO LEU ALA ARG LEU GLU SEQRES 29 A 410 ALA LYS ILE ALA LEU THR ALA PHE LEU LYS LYS PHE LYS SEQRES 30 A 410 HIS ILE GLU ALA VAL PRO SER PHE GLN LEU GLU GLU ASN SEQRES 31 A 410 LEU THR ASP SER ALA THR GLY GLN THR LEU THR SER LEU SEQRES 32 A 410 PRO LEU LYS ALA SER ARG MET SEQRES 1 B 410 MET LYS GLU VAL ILE ALA VAL LYS GLU ILE THR ARG PHE SEQRES 2 B 410 LYS THR ARG THR GLU GLU PHE SER PRO TYR ALA TRP CYS SEQRES 3 B 410 LYS ARG MET LEU GLU ASN ASP PRO VAL SER TYR HIS GLU SEQRES 4 B 410 GLY THR ASP THR TRP ASN VAL PHE LYS TYR GLU ASP VAL SEQRES 5 B 410 LYS ARG VAL LEU SER ASP TYR LYS HIS PHE SER SER VAL SEQRES 6 B 410 ARG LYS ARG THR THR ILE SER VAL GLY THR ASP SER GLU SEQRES 7 B 410 GLU GLY SER VAL PRO GLU LYS ILE GLN ILE THR GLU SER SEQRES 8 B 410 ASP PRO PRO ASP HIS ARG LYS ARG ARG SER LEU LEU ALA SEQRES 9 B 410 ALA ALA PHE THR PRO ARG SER LEU GLN ASN TRP GLU PRO SEQRES 10 B 410 ARG ILE GLN GLU ILE ALA ASP GLU LEU ILE GLY GLN MET SEQRES 11 B 410 ASP GLY GLY THR GLU ILE ASP ILE VAL ALA SER LEU ALA SEQRES 12 B 410 SER PRO LEU PRO ILE ILE VAL MET ALA ASP LEU MET GLY SEQRES 13 B 410 VAL PRO SER LYS ASP ARG LEU LEU PHE LYS LYS TRP VAL SEQRES 14 B 410 ASP THR LEU PHE LEU PRO PHE ASP ARG GLU LYS GLN GLU SEQRES 15 B 410 GLU VAL ASP LYS LEU LYS GLN VAL ALA ALA LYS GLU TYR SEQRES 16 B 410 TYR GLN TYR LEU TYR PRO ILE VAL VAL GLN LYS ARG LEU SEQRES 17 B 410 ASN PRO ALA ASP ASP ILE ILE SER ASP LEU LEU LYS SER SEQRES 18 B 410 GLU VAL ASP GLY GLU MET PHE THR ASP ASP GLU VAL VAL SEQRES 19 B 410 ARG THR THR MET LEU ILE LEU GLY ALA GLY VAL GLU THR SEQRES 20 B 410 THR SER HIS LEU LEU ALA ASN SER PHE TYR SER LEU LEU SEQRES 21 B 410 TYR ASP ASP LYS GLU VAL TYR GLN GLU LEU HIS GLU ASN SEQRES 22 B 410 LEU ASP LEU VAL PRO GLN ALA VAL GLU GLU MET LEU ARG SEQRES 23 B 410 PHE ARG PHE ASN LEU ILE LYS LEU ASP ARG THR VAL LYS SEQRES 24 B 410 GLU ASP ASN ASP LEU LEU GLY VAL GLU LEU LYS GLU GLY SEQRES 25 B 410 ASP SER VAL VAL VAL TRP MET SER ALA ALA ASN MET ASP SEQRES 26 B 410 GLU GLU MET PHE GLU ASP PRO PHE THR LEU ASN ILE HIS SEQRES 27 B 410 ARG PRO ASN ASN LYS LYS HIS LEU THR PHE GLY ASN GLY SEQRES 28 B 410 PRO HIS PHE CYS LEU GLY ALA PRO LEU ALA ARG LEU GLU SEQRES 29 B 410 ALA LYS ILE ALA LEU THR ALA PHE LEU LYS LYS PHE LYS SEQRES 30 B 410 HIS ILE GLU ALA VAL PRO SER PHE GLN LEU GLU GLU ASN SEQRES 31 B 410 LEU THR ASP SER ALA THR GLY GLN THR LEU THR SER LEU SEQRES 32 B 410 PRO LEU LYS ALA SER ARG MET HET HEM A 501 43 HET ACT A 502 4 HET HEM B 501 43 HET ACT B 502 4 HETNAM HEM PROTOPORPHYRIN IX CONTAINING FE HETNAM ACT ACETATE ION HETSYN HEM HEME FORMUL 3 HEM 2(C34 H32 FE N4 O4) FORMUL 4 ACT 2(C2 H3 O2 1-) FORMUL 7 HOH *533(H2 O) HELIX 1 AA1 ALA A 6 ARG A 12 1 7 HELIX 2 AA2 THR A 15 SER A 21 1 7 HELIX 3 AA3 PRO A 22 ASP A 33 1 12 HELIX 4 AA4 LYS A 48 ASP A 58 1 11 HELIX 5 AA5 PRO A 83 GLN A 87 5 5 HELIX 6 AA6 PRO A 94 ALA A 105 1 12 HELIX 7 AA7 THR A 108 GLN A 129 1 22 HELIX 8 AA8 ILE A 138 LEU A 142 1 5 HELIX 9 AA9 SER A 144 GLY A 156 1 13 HELIX 10 AB1 PRO A 158 LYS A 160 5 3 HELIX 11 AB2 ASP A 161 LEU A 174 1 14 HELIX 12 AB3 GLU A 183 ASN A 209 1 27 HELIX 13 AB4 ASP A 213 SER A 221 1 9 HELIX 14 AB5 THR A 229 ASP A 262 1 34 HELIX 15 AB6 GLU A 265 ASN A 273 1 9 HELIX 16 AB7 LEU A 276 ARG A 288 1 13 HELIX 17 AB8 MET A 319 ASN A 323 1 5 HELIX 18 AB9 ASN A 341 HIS A 345 5 5 HELIX 19 AC1 ASN A 350 PHE A 354 5 5 HELIX 20 AC2 GLY A 357 PHE A 376 1 20 HELIX 21 AC3 GLN A 386 GLU A 389 5 4 HELIX 22 AC4 ALA B 6 ARG B 12 1 7 HELIX 23 AC5 THR B 15 SER B 21 1 7 HELIX 24 AC6 PRO B 22 ASP B 33 1 12 HELIX 25 AC7 LYS B 48 ASP B 58 1 11 HELIX 26 AC8 PRO B 83 GLN B 87 5 5 HELIX 27 AC9 PRO B 94 ALA B 105 1 12 HELIX 28 AD1 THR B 108 GLN B 129 1 22 HELIX 29 AD2 ILE B 138 LEU B 142 1 5 HELIX 30 AD3 SER B 144 GLY B 156 1 13 HELIX 31 AD4 PRO B 158 LYS B 160 5 3 HELIX 32 AD5 ASP B 161 LEU B 174 1 14 HELIX 33 AD6 GLU B 182 ASN B 209 1 28 HELIX 34 AD7 ASP B 213 SER B 221 1 9 HELIX 35 AD8 THR B 229 ASP B 262 1 34 HELIX 36 AD9 GLU B 265 ASN B 273 1 9 HELIX 37 AE1 LEU B 276 ARG B 288 1 13 HELIX 38 AE2 MET B 319 ASN B 323 1 5 HELIX 39 AE3 ASN B 341 HIS B 345 5 5 HELIX 40 AE4 ASN B 350 PHE B 354 5 5 HELIX 41 AE5 GLY B 357 PHE B 376 1 20 HELIX 42 AE6 GLN B 386 GLU B 389 5 4 SHEET 1 AA1 5 VAL A 35 HIS A 38 0 SHEET 2 AA1 5 THR A 43 VAL A 46 -1 O THR A 43 N HIS A 38 SHEET 3 AA1 5 SER A 314 TRP A 318 1 O VAL A 316 N TRP A 44 SHEET 4 AA1 5 LYS A 293 VAL A 298 -1 N LEU A 294 O VAL A 317 SHEET 5 AA1 5 PHE A 62 SER A 63 -1 N SER A 63 O THR A 297 SHEET 1 AA2 3 GLU A 135 ASP A 137 0 SHEET 2 AA2 3 PRO A 404 SER A 408 -1 O LEU A 405 N ILE A 136 SHEET 3 AA2 3 HIS A 378 ALA A 381 -1 N GLU A 380 O LYS A 406 SHEET 1 AA3 2 LEU A 391 THR A 392 0 SHEET 2 AA3 2 THR A 399 LEU A 400 -1 O THR A 399 N THR A 392 SHEET 1 AA4 5 VAL B 35 HIS B 38 0 SHEET 2 AA4 5 THR B 43 VAL B 46 -1 O ASN B 45 N SER B 36 SHEET 3 AA4 5 SER B 314 TRP B 318 1 O VAL B 316 N TRP B 44 SHEET 4 AA4 5 LYS B 293 VAL B 298 -1 N LEU B 294 O VAL B 317 SHEET 5 AA4 5 PHE B 62 SER B 63 -1 N SER B 63 O THR B 297 SHEET 1 AA5 3 GLU B 135 ASP B 137 0 SHEET 2 AA5 3 PRO B 404 SER B 408 -1 O LEU B 405 N ILE B 136 SHEET 3 AA5 3 HIS B 378 ALA B 381 -1 N GLU B 380 O LYS B 406 SHEET 1 AA6 2 LEU B 391 THR B 392 0 SHEET 2 AA6 2 THR B 399 LEU B 400 -1 O THR B 399 N THR B 392 LINK SG CYS A 355 FE HEM A 501 1555 1555 2.34 LINK FE HEM A 501 O HOH A 822 1555 1555 2.38 LINK SG CYS B 355 FE HEM B 501 1555 1555 2.36 LINK FE HEM B 501 O HOH B 808 1555 1555 2.27 CISPEP 1 PRO A 93 PRO A 94 0 6.93 CISPEP 2 PRO A 175 PHE A 176 0 -9.13 CISPEP 3 ASN A 290 LEU A 291 0 -6.42 CISPEP 4 PRO B 93 PRO B 94 0 6.93 CISPEP 5 ASN B 290 LEU B 291 0 -7.65 SITE 1 AC1 20 ILE A 88 THR A 89 HIS A 96 ARG A 100 SITE 2 AC1 20 MET A 151 ALA A 243 GLY A 244 THR A 247 SITE 3 AC1 20 THR A 248 LEU A 294 ARG A 296 THR A 347 SITE 4 AC1 20 PHE A 348 HIS A 353 CYS A 355 GLY A 357 SITE 5 AC1 20 HOH A 661 HOH A 665 HOH A 715 HOH A 822 SITE 1 AC2 7 PRO A 93 HIS A 96 ARG A 97 PRO A 352 SITE 2 AC2 7 HOH A 604 HOH A 869 VAL B 35 SITE 1 AC3 21 ILE B 88 THR B 89 HIS B 96 ARG B 100 SITE 2 AC3 21 ALA B 243 GLY B 244 THR B 247 THR B 248 SITE 3 AC3 21 LEU B 294 ARG B 296 MET B 319 THR B 347 SITE 4 AC3 21 PHE B 348 PRO B 352 HIS B 353 CYS B 355 SITE 5 AC3 21 GLY B 357 HOH B 664 HOH B 672 HOH B 693 SITE 6 AC3 21 HOH B 808 SITE 1 AC4 6 VAL A 35 PRO B 93 HIS B 96 ARG B 97 SITE 2 AC4 6 HOH B 752 HOH B 753 CRYST1 47.060 114.060 83.450 90.00 103.14 90.00 P 1 21 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.021249 0.000000 0.004963 0.00000 SCALE2 0.000000 0.008767 0.000000 0.00000 SCALE3 0.000000 0.000000 0.012306 0.00000 MTRIX1 1 0.999900 -0.010120 -0.004943 23.50000 1 MTRIX2 1 -0.010320 -0.999000 -0.042940 -24.93000 1 MTRIX3 1 -0.004504 0.042990 -0.999100 40.37000 1