HEADER TRANSFERASE 19-MAR-15 4YUX TITLE CRYSTAL STRUCTURE OF TRYPANOSOMA CRUZI SPERMIDINE SYNTHASE IN COMPLEX TITLE 2 WITH 2H-1,4-BENZOTHIAZIN-3-AMINE COMPND MOL_ID: 1; COMPND 2 MOLECULE: SPERMIDINE SYNTHASE, PUTATIVE; COMPND 3 CHAIN: A, B; COMPND 4 EC: 2.5.1.16; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: TRYPANOSOMA CRUZI (STRAIN CL BRENER); SOURCE 3 ORGANISM_TAXID: 353153; SOURCE 4 STRAIN: CL BRENER; SOURCE 5 GENE: TC00.1047053510339.50; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS METHYLTRANSFERASE, POLYAMINE SYNTHESIS, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR Y.AMANO,Y.TATEISHI REVDAT 3 08-NOV-23 4YUX 1 REMARK REVDAT 2 25-DEC-19 4YUX 1 JRNL REMARK REVDAT 1 09-SEP-15 4YUX 0 JRNL AUTH Y.AMANO,I.NAMATAME,Y.TATEISHI,K.HONBOH,E.TANABE,T.NIIMI, JRNL AUTH 2 H.SAKASHITA JRNL TITL STRUCTURAL INSIGHTS INTO THE NOVEL INHIBITION MECHANISM OF JRNL TITL 2 TRYPANOSOMA CRUZI SPERMIDINE SYNTHASE. JRNL REF ACTA CRYSTALLOGR.,SECT.D V. 71 1879 2015 JRNL REFN ESSN 1399-0047 JRNL PMID 26327378 JRNL DOI 10.1107/S1399004715013048 REMARK 2 REMARK 2 RESOLUTION. 1.60 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0049 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.60 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 23.82 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 91.1 REMARK 3 NUMBER OF REFLECTIONS : 62982 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.179 REMARK 3 R VALUE (WORKING SET) : 0.177 REMARK 3 FREE R VALUE : 0.218 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 3347 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.60 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.64 REMARK 3 REFLECTION IN BIN (WORKING SET) : 4858 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 95.81 REMARK 3 BIN R VALUE (WORKING SET) : 0.1710 REMARK 3 BIN FREE R VALUE SET COUNT : 222 REMARK 3 BIN FREE R VALUE : 0.2240 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 4604 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 70 REMARK 3 SOLVENT ATOMS : 317 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 18.97 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.00000 REMARK 3 B22 (A**2) : 0.00000 REMARK 3 B33 (A**2) : 0.00000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.101 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.103 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.053 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 1.467 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.941 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.920 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 4796 ; 0.025 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 6509 ; 2.345 ; 1.978 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 585 ; 7.141 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 216 ;33.593 ;23.889 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 785 ;14.266 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 30 ;19.977 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 705 ; 0.177 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 3734 ; 0.016 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2348 ; 1.760 ; 1.657 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2929 ; 2.298 ; 2.481 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 2448 ; 3.299 ; 1.946 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): 7724 ; 5.249 ;15.050 REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4YUX COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 23-MAR-15. REMARK 100 THE DEPOSITION ID IS D_1000207973. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 16-DEC-13 REMARK 200 TEMPERATURE (KELVIN) : 90 REMARK 200 PH : 5.5 - 6.5 REMARK 200 NUMBER OF CRYSTALS USED : NULL REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : PHOTON FACTORY REMARK 200 BEAMLINE : AR-NE3A REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 270 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 62982 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.600 REMARK 200 RESOLUTION RANGE LOW (A) : 24.840 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 91.1 REMARK 200 DATA REDUNDANCY : 3.600 REMARK 200 R MERGE (I) : 0.05900 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 10.0000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.60 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.64 REMARK 200 COMPLETENESS FOR SHELL (%) : 95.8 REMARK 200 DATA REDUNDANCY IN SHELL : 3.40 REMARK 200 R MERGE FOR SHELL (I) : 0.11300 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 4.000 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: AMORE REMARK 200 STARTING MODEL: 3BWB REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 40.37 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.06 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PEG4000, AMMONIUM SULFATE, BIS-TRIS, REMARK 280 VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 46.96250 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 5010 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 20560 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -24.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A -7 REMARK 465 ALA A -6 REMARK 465 HIS A -5 REMARK 465 HIS A -4 REMARK 465 HIS A -3 REMARK 465 HIS A -2 REMARK 465 HIS A -1 REMARK 465 HIS A 0 REMARK 465 MET A 1 REMARK 465 SER A 295 REMARK 465 GLU A 296 REMARK 465 MET B -7 REMARK 465 ALA B -6 REMARK 465 HIS B -5 REMARK 465 HIS B -4 REMARK 465 HIS B -3 REMARK 465 HIS B -2 REMARK 465 HIS B -1 REMARK 465 HIS B 0 REMARK 465 SER B 295 REMARK 465 GLU B 296 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 NH2 ARG A 260 O HOH A 601 2.01 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 GLU A 46 CG GLU A 46 CD 0.095 REMARK 500 GLU A 75 CD GLU A 75 OE2 0.096 REMARK 500 SER A 137 CB SER A 137 OG 0.095 REMARK 500 TYR A 229 CE1 TYR A 229 CZ -0.096 REMARK 500 SER A 241 CA SER A 241 CB -0.101 REMARK 500 SER B 25 CA SER B 25 CB 0.097 REMARK 500 GLY B 78 N GLY B 78 CA 0.093 REMARK 500 SER B 84 CB SER B 84 OG 0.084 REMARK 500 ILE B 292 CA ILE B 292 C 0.187 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 PHE A 39 CB - CG - CD1 ANGL. DEV. = -4.6 DEGREES REMARK 500 ARG A 90 NE - CZ - NH1 ANGL. DEV. = 4.2 DEGREES REMARK 500 ARG A 103 NE - CZ - NH1 ANGL. DEV. = 3.8 DEGREES REMARK 500 ARG A 146 NE - CZ - NH1 ANGL. DEV. = -4.0 DEGREES REMARK 500 ASP A 159 CB - CG - OD1 ANGL. DEV. = 5.9 DEGREES REMARK 500 LEU A 285 CB - CG - CD1 ANGL. DEV. = -10.3 DEGREES REMARK 500 ARG B 13 NE - CZ - NH2 ANGL. DEV. = -4.1 DEGREES REMARK 500 LEU B 32 CB - CG - CD1 ANGL. DEV. = 11.5 DEGREES REMARK 500 ARG B 103 NE - CZ - NH2 ANGL. DEV. = -3.1 DEGREES REMARK 500 ASP B 149 CB - CG - OD1 ANGL. DEV. = 5.8 DEGREES REMARK 500 GLN B 156 CB - CG - CD ANGL. DEV. = 16.4 DEGREES REMARK 500 ASP B 159 CB - CG - OD1 ANGL. DEV. = 6.8 DEGREES REMARK 500 ASP B 208 CB - CG - OD2 ANGL. DEV. = 6.1 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ALA A 23 119.82 -166.12 REMARK 500 LYS A 87 85.92 -170.14 REMARK 500 GLU A 203 -164.99 68.79 REMARK 500 CYS A 239 -4.48 74.74 REMARK 500 TYR A 273 -59.05 -123.72 REMARK 500 ASP B 34 97.09 -160.94 REMARK 500 LYS B 87 83.12 -169.42 REMARK 500 GLU B 203 -163.23 67.35 REMARK 500 CYS B 239 -2.05 74.60 REMARK 500 TYR B 273 -59.13 -126.76 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue S4M A 501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue 4JT A 502 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue S4M B 501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue 4JT B 502 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4YUV RELATED DB: PDB REMARK 900 RELATED ID: 4YUW RELATED DB: PDB REMARK 900 RELATED ID: 4YUY RELATED DB: PDB REMARK 900 RELATED ID: 4YUZ RELATED DB: PDB REMARK 900 RELATED ID: 4YV0 RELATED DB: PDB REMARK 900 RELATED ID: 4YV1 RELATED DB: PDB REMARK 900 RELATED ID: 4YV2 RELATED DB: PDB DBREF 4YUX A 1 296 UNP Q4DA73 Q4DA73_TRYCC 1 296 DBREF 4YUX B 1 296 UNP Q4DA73 Q4DA73_TRYCC 1 296 SEQADV 4YUX MET A -7 UNP Q4DA73 INITIATING METHIONINE SEQADV 4YUX ALA A -6 UNP Q4DA73 EXPRESSION TAG SEQADV 4YUX HIS A -5 UNP Q4DA73 EXPRESSION TAG SEQADV 4YUX HIS A -4 UNP Q4DA73 EXPRESSION TAG SEQADV 4YUX HIS A -3 UNP Q4DA73 EXPRESSION TAG SEQADV 4YUX HIS A -2 UNP Q4DA73 EXPRESSION TAG SEQADV 4YUX HIS A -1 UNP Q4DA73 EXPRESSION TAG SEQADV 4YUX HIS A 0 UNP Q4DA73 EXPRESSION TAG SEQADV 4YUX MET B -7 UNP Q4DA73 INITIATING METHIONINE SEQADV 4YUX ALA B -6 UNP Q4DA73 EXPRESSION TAG SEQADV 4YUX HIS B -5 UNP Q4DA73 EXPRESSION TAG SEQADV 4YUX HIS B -4 UNP Q4DA73 EXPRESSION TAG SEQADV 4YUX HIS B -3 UNP Q4DA73 EXPRESSION TAG SEQADV 4YUX HIS B -2 UNP Q4DA73 EXPRESSION TAG SEQADV 4YUX HIS B -1 UNP Q4DA73 EXPRESSION TAG SEQADV 4YUX HIS B 0 UNP Q4DA73 EXPRESSION TAG SEQRES 1 A 304 MET ALA HIS HIS HIS HIS HIS HIS MET PRO GLY SER GLU SEQRES 2 A 304 LEU ILE SER GLY GLY TRP PHE ARG GLU GLU ASN ASP GLN SEQRES 3 A 304 TRP PRO GLY GLN ALA MET SER LEU ARG VAL GLU LYS VAL SEQRES 4 A 304 LEU TYR ASP ALA PRO THR LYS PHE GLN HIS LEU THR ILE SEQRES 5 A 304 PHE GLU SER ASP PRO LYS GLY PRO TRP GLY THR VAL MET SEQRES 6 A 304 ALA LEU ASP GLY CYS ILE GLN VAL THR ASP TYR ASP GLU SEQRES 7 A 304 PHE VAL TYR HIS GLU VAL LEU GLY HIS THR SER LEU CYS SEQRES 8 A 304 SER HIS PRO LYS PRO GLU ARG VAL LEU ILE ILE GLY GLY SEQRES 9 A 304 GLY ASP GLY GLY VAL LEU ARG GLU VAL LEU ARG HIS GLY SEQRES 10 A 304 THR VAL GLU HIS CYS ASP LEU VAL ASP ILE ASP GLY GLU SEQRES 11 A 304 VAL MET GLU GLN SER LYS GLN HIS PHE PRO GLN ILE SER SEQRES 12 A 304 ARG SER LEU ALA ASP PRO ARG ALA THR VAL ARG VAL GLY SEQRES 13 A 304 ASP GLY LEU ALA PHE VAL ARG GLN THR PRO ASP ASN THR SEQRES 14 A 304 TYR ASP VAL VAL ILE ILE ASP THR THR ASP PRO ALA GLY SEQRES 15 A 304 PRO ALA SER LYS LEU PHE GLY GLU ALA PHE TYR LYS ASP SEQRES 16 A 304 VAL LEU ARG ILE LEU LYS PRO ASP GLY ILE CYS CYS ASN SEQRES 17 A 304 GLN GLY GLU SER ILE TRP LEU ASP LEU GLU LEU ILE GLU SEQRES 18 A 304 LYS MET SER ARG PHE ILE ARG GLU THR GLY PHE ALA SER SEQRES 19 A 304 VAL GLN TYR ALA LEU MET HIS VAL PRO THR TYR PRO CYS SEQRES 20 A 304 GLY SER ILE GLY THR LEU VAL CYS SER LYS LYS ALA GLY SEQRES 21 A 304 VAL ASP VAL THR LYS PRO LEU ARG PRO VAL GLU ASP MET SEQRES 22 A 304 PRO PHE ALA LYS ASP LEU LYS TYR TYR ASP SER GLU MET SEQRES 23 A 304 HIS LYS ALA SER PHE ALA LEU PRO ARG PHE ALA ARG HIS SEQRES 24 A 304 ILE ASN ASN SER GLU SEQRES 1 B 304 MET ALA HIS HIS HIS HIS HIS HIS MET PRO GLY SER GLU SEQRES 2 B 304 LEU ILE SER GLY GLY TRP PHE ARG GLU GLU ASN ASP GLN SEQRES 3 B 304 TRP PRO GLY GLN ALA MET SER LEU ARG VAL GLU LYS VAL SEQRES 4 B 304 LEU TYR ASP ALA PRO THR LYS PHE GLN HIS LEU THR ILE SEQRES 5 B 304 PHE GLU SER ASP PRO LYS GLY PRO TRP GLY THR VAL MET SEQRES 6 B 304 ALA LEU ASP GLY CYS ILE GLN VAL THR ASP TYR ASP GLU SEQRES 7 B 304 PHE VAL TYR HIS GLU VAL LEU GLY HIS THR SER LEU CYS SEQRES 8 B 304 SER HIS PRO LYS PRO GLU ARG VAL LEU ILE ILE GLY GLY SEQRES 9 B 304 GLY ASP GLY GLY VAL LEU ARG GLU VAL LEU ARG HIS GLY SEQRES 10 B 304 THR VAL GLU HIS CYS ASP LEU VAL ASP ILE ASP GLY GLU SEQRES 11 B 304 VAL MET GLU GLN SER LYS GLN HIS PHE PRO GLN ILE SER SEQRES 12 B 304 ARG SER LEU ALA ASP PRO ARG ALA THR VAL ARG VAL GLY SEQRES 13 B 304 ASP GLY LEU ALA PHE VAL ARG GLN THR PRO ASP ASN THR SEQRES 14 B 304 TYR ASP VAL VAL ILE ILE ASP THR THR ASP PRO ALA GLY SEQRES 15 B 304 PRO ALA SER LYS LEU PHE GLY GLU ALA PHE TYR LYS ASP SEQRES 16 B 304 VAL LEU ARG ILE LEU LYS PRO ASP GLY ILE CYS CYS ASN SEQRES 17 B 304 GLN GLY GLU SER ILE TRP LEU ASP LEU GLU LEU ILE GLU SEQRES 18 B 304 LYS MET SER ARG PHE ILE ARG GLU THR GLY PHE ALA SER SEQRES 19 B 304 VAL GLN TYR ALA LEU MET HIS VAL PRO THR TYR PRO CYS SEQRES 20 B 304 GLY SER ILE GLY THR LEU VAL CYS SER LYS LYS ALA GLY SEQRES 21 B 304 VAL ASP VAL THR LYS PRO LEU ARG PRO VAL GLU ASP MET SEQRES 22 B 304 PRO PHE ALA LYS ASP LEU LYS TYR TYR ASP SER GLU MET SEQRES 23 B 304 HIS LYS ALA SER PHE ALA LEU PRO ARG PHE ALA ARG HIS SEQRES 24 B 304 ILE ASN ASN SER GLU HET S4M A 501 24 HET 4JT A 502 11 HET S4M B 501 24 HET 4JT B 502 11 HETNAM S4M 5'-[(S)-(3-AMINOPROPYL)(METHYL)-LAMBDA~4~-SULFANYL]-5'- HETNAM 2 S4M DEOXYADENOSINE HETNAM 4JT 2H-1,4-BENZOTHIAZIN-3-AMINE FORMUL 3 S4M 2(C14 H24 N6 O3 S) FORMUL 4 4JT 2(C8 H8 N2 S) FORMUL 7 HOH *317(H2 O) HELIX 1 AA1 GLY A 3 GLU A 5 5 3 HELIX 2 AA2 GLU A 70 CYS A 83 1 14 HELIX 3 AA3 GLY A 99 ARG A 107 1 9 HELIX 4 AA4 ASP A 120 PHE A 131 1 12 HELIX 5 AA5 PHE A 131 ARG A 136 1 6 HELIX 6 AA6 SER A 137 ASP A 140 5 4 HELIX 7 AA7 ASP A 149 GLN A 156 1 8 HELIX 8 AA8 ALA A 176 PHE A 180 5 5 HELIX 9 AA9 GLY A 181 ILE A 191 1 11 HELIX 10 AB1 ASP A 208 GLY A 223 1 16 HELIX 11 AB2 TYR A 237 CYS A 239 5 3 HELIX 12 AB3 PRO A 261 MET A 265 5 5 HELIX 13 AB4 PHE A 267 LEU A 271 5 5 HELIX 14 AB5 ASP A 275 PHE A 283 1 9 HELIX 15 AB6 PRO A 286 ASN A 293 5 8 HELIX 16 AB7 GLY B 3 GLU B 5 5 3 HELIX 17 AB8 GLU B 70 CYS B 83 1 14 HELIX 18 AB9 GLY B 99 LEU B 106 1 8 HELIX 19 AC1 ASP B 120 PHE B 131 1 12 HELIX 20 AC2 PHE B 131 ARG B 136 1 6 HELIX 21 AC3 ASP B 149 THR B 157 1 9 HELIX 22 AC4 ALA B 176 PHE B 180 5 5 HELIX 23 AC5 GLY B 181 ILE B 191 1 11 HELIX 24 AC6 ASP B 208 GLY B 223 1 16 HELIX 25 AC7 TYR B 237 CYS B 239 5 3 HELIX 26 AC8 PRO B 261 MET B 265 5 5 HELIX 27 AC9 PHE B 267 LEU B 271 5 5 HELIX 28 AD1 ASP B 275 PHE B 283 1 9 HELIX 29 AD2 PRO B 286 ASN B 293 5 8 SHEET 1 AA1 6 ILE A 7 SER A 8 0 SHEET 2 AA1 6 TRP A 11 ARG A 13 -1 O TRP A 11 N SER A 8 SHEET 3 AA1 6 GLN A 22 PRO A 36 -1 O LEU A 26 N PHE A 12 SHEET 4 AA1 6 GLN B 22 PRO B 36 -1 O SER B 25 N ALA A 23 SHEET 5 AA1 6 TRP B 11 ARG B 13 -1 N PHE B 12 O LEU B 26 SHEET 6 AA1 6 ILE B 7 SER B 8 -1 N SER B 8 O TRP B 11 SHEET 1 AA2 8 CYS A 62 THR A 66 0 SHEET 2 AA2 8 THR A 55 LEU A 59 -1 N MET A 57 O GLN A 64 SHEET 3 AA2 8 HIS A 41 SER A 47 -1 N THR A 43 O ALA A 58 SHEET 4 AA2 8 GLN A 22 PRO A 36 -1 N TYR A 33 O ILE A 44 SHEET 5 AA2 8 GLN B 22 PRO B 36 -1 O SER B 25 N ALA A 23 SHEET 6 AA2 8 HIS B 41 SER B 47 -1 O GLU B 46 N LYS B 30 SHEET 7 AA2 8 THR B 55 LEU B 59 -1 O ALA B 58 N THR B 43 SHEET 8 AA2 8 CYS B 62 THR B 66 -1 O GLN B 64 N MET B 57 SHEET 1 AA3 7 ALA A 143 VAL A 147 0 SHEET 2 AA3 7 HIS A 113 ASP A 118 1 N LEU A 116 O ARG A 146 SHEET 3 AA3 7 ARG A 90 GLY A 95 1 N GLY A 95 O VAL A 117 SHEET 4 AA3 7 TYR A 162 ASP A 168 1 O ILE A 166 N LEU A 92 SHEET 5 AA3 7 LEU A 192 ASN A 200 1 O LYS A 193 N TYR A 162 SHEET 6 AA3 7 SER A 241 SER A 248 -1 O CYS A 247 N CYS A 198 SHEET 7 AA3 7 SER A 226 HIS A 233 -1 N GLN A 228 O VAL A 246 SHEET 1 AA4 7 ALA B 143 VAL B 147 0 SHEET 2 AA4 7 HIS B 113 ASP B 118 1 N LEU B 116 O ARG B 146 SHEET 3 AA4 7 ARG B 90 GLY B 95 1 N GLY B 95 O VAL B 117 SHEET 4 AA4 7 TYR B 162 ASP B 168 1 O ILE B 166 N LEU B 92 SHEET 5 AA4 7 LEU B 192 ASN B 200 1 O CYS B 199 N ILE B 167 SHEET 6 AA4 7 SER B 241 SER B 248 -1 O CYS B 247 N CYS B 198 SHEET 7 AA4 7 SER B 226 HIS B 233 -1 N GLN B 228 O VAL B 246 SITE 1 AC1 20 GLN A 40 LEU A 59 GLN A 64 HIS A 74 SITE 2 AC1 20 GLY A 95 ASP A 98 VAL A 117 ASP A 118 SITE 3 AC1 20 ILE A 119 ASP A 120 VAL A 123 ASP A 149 SITE 4 AC1 20 GLY A 150 ASP A 168 THR A 169 THR A 170 SITE 5 AC1 20 PRO A 175 ALA A 176 LEU A 179 4JT A 502 SITE 1 AC2 8 ILE A 63 GLN A 64 TYR A 73 THR A 169 SITE 2 AC2 8 GLN A 201 THR A 236 S4M A 501 HOH A 613 SITE 1 AC3 21 GLN B 40 LEU B 59 GLN B 64 TYR B 73 SITE 2 AC3 21 HIS B 74 GLY B 95 ASP B 98 VAL B 117 SITE 3 AC3 21 ASP B 118 ILE B 119 ASP B 120 VAL B 123 SITE 4 AC3 21 ASP B 149 GLY B 150 ASP B 168 THR B 169 SITE 5 AC3 21 THR B 170 PRO B 175 ALA B 176 LEU B 179 SITE 6 AC3 21 4JT B 502 SITE 1 AC4 10 ILE B 63 GLN B 64 TYR B 73 THR B 169 SITE 2 AC4 10 GLN B 201 THR B 236 TYR B 237 ILE B 242 SITE 3 AC4 10 S4M B 501 HOH B 605 CRYST1 44.760 93.925 68.015 90.00 100.23 90.00 P 1 21 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.022341 0.000000 0.004032 0.00000 SCALE2 0.000000 0.010647 0.000000 0.00000 SCALE3 0.000000 0.000000 0.014940 0.00000