HEADER TRANSFERASE 19-MAR-15 4YV2 TITLE CRYSTAL STRUCTURE OF TRYPANOSOMA CRUZI SPERMIDINE SYNTHASE IN COMPLEX TITLE 2 WITH 2-PHENYL-1,2-THIAZOL-3(2H)-ONE COMPND MOL_ID: 1; COMPND 2 MOLECULE: SPERMIDINE SYNTHASE, PUTATIVE; COMPND 3 CHAIN: A, B; COMPND 4 EC: 2.5.1.16; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: TRYPANOSOMA CRUZI (STRAIN CL BRENER); SOURCE 3 ORGANISM_TAXID: 353153; SOURCE 4 STRAIN: CL BRENER; SOURCE 5 GENE: TC00.1047053510339.50; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS METHYLTRANSFERASE, POLYAMINE SYNTHESIS, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR Y.AMANO,Y.TATEISHI REVDAT 3 03-APR-24 4YV2 1 REMARK SSBOND REVDAT 2 05-FEB-20 4YV2 1 REMARK REVDAT 1 16-SEP-15 4YV2 0 JRNL AUTH Y.AMANO,I.NAMATAME,Y.TATEISHI,K.HONBOH,E.TANABE,T.NIIMI, JRNL AUTH 2 H.SAKASHITA JRNL TITL STRUCTURAL INSIGHTS INTO THE NOVEL INHIBITION MECHANISM OF JRNL TITL 2 TRYPANOSOMA CRUZI SPERMIDINE SYNTHASE JRNL REF ACTA CRYSTALLOGR.,SECT.D V. 71 1879 2015 JRNL REFN ESSN 1399-0047 JRNL PMID 26327378 JRNL DOI 10.1107/S1399004715013048 REMARK 2 REMARK 2 RESOLUTION. 2.17 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0049 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.17 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 26.66 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 97.5 REMARK 3 NUMBER OF REFLECTIONS : 28723 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.223 REMARK 3 R VALUE (WORKING SET) : 0.220 REMARK 3 FREE R VALUE : 0.282 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1517 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.17 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.23 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2122 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 98.42 REMARK 3 BIN R VALUE (WORKING SET) : 0.2770 REMARK 3 BIN FREE R VALUE SET COUNT : 119 REMARK 3 BIN FREE R VALUE : 0.3380 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 4365 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 72 REMARK 3 SOLVENT ATOMS : 49 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 37.48 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.03000 REMARK 3 B22 (A**2) : 0.04000 REMARK 3 B33 (A**2) : -0.02000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.03000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.316 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.248 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.196 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 7.690 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.942 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.910 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 4548 ; 0.015 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 6164 ; 1.943 ; 1.974 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 547 ; 7.040 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 211 ;34.459 ;23.839 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 754 ;18.478 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 30 ;21.822 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 670 ; 0.136 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 3538 ; 0.010 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2202 ; 3.066 ; 3.522 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2743 ; 4.224 ; 5.266 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 2346 ; 4.084 ; 3.914 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): 6971 ; 7.564 ;30.536 REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4YV2 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ. REMARK 100 THE DEPOSITION ID IS D_1000207978. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 16-DEC-13 REMARK 200 TEMPERATURE (KELVIN) : 90 REMARK 200 PH : 5.5 - 6.5 REMARK 200 NUMBER OF CRYSTALS USED : NULL REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : PHOTON FACTORY REMARK 200 BEAMLINE : AR-NE3A REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 270 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 28723 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.170 REMARK 200 RESOLUTION RANGE LOW (A) : 26.660 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 97.5 REMARK 200 DATA REDUNDANCY : 3.400 REMARK 200 R MERGE (I) : 0.07100 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 8.6000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.17 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.23 REMARK 200 COMPLETENESS FOR SHELL (%) : 98.4 REMARK 200 DATA REDUNDANCY IN SHELL : 3.40 REMARK 200 R MERGE FOR SHELL (I) : 0.35000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.600 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: NULL REMARK 200 SOFTWARE USED: AMORE REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 46.34 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.29 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PEG4000, AMMONIUM SULFATE, BIS-TRIS, REMARK 280 VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 50.15750 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 5390 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 21660 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -25.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A -7 REMARK 465 ALA A -6 REMARK 465 HIS A -5 REMARK 465 HIS A -4 REMARK 465 HIS A -3 REMARK 465 HIS A -2 REMARK 465 HIS A -1 REMARK 465 HIS A 0 REMARK 465 MET A 1 REMARK 465 PRO A 2 REMARK 465 GLY A 3 REMARK 465 SER A 4 REMARK 465 THR A 170 REMARK 465 ASP A 171 REMARK 465 PRO A 172 REMARK 465 ALA A 173 REMARK 465 GLY A 174 REMARK 465 PRO A 175 REMARK 465 ALA A 176 REMARK 465 SER A 177 REMARK 465 LYS A 178 REMARK 465 LEU A 179 REMARK 465 PHE A 180 REMARK 465 GLY A 181 REMARK 465 SER A 295 REMARK 465 GLU A 296 REMARK 465 MET B -7 REMARK 465 ALA B -6 REMARK 465 HIS B -5 REMARK 465 HIS B -4 REMARK 465 HIS B -3 REMARK 465 HIS B -2 REMARK 465 HIS B -1 REMARK 465 HIS B 0 REMARK 465 MET B 1 REMARK 465 PRO B 2 REMARK 465 GLY B 3 REMARK 465 SER B 4 REMARK 465 GLU B 5 REMARK 465 LEU B 6 REMARK 465 ILE B 7 REMARK 465 SER B 8 REMARK 465 GLY B 9 REMARK 465 THR B 170 REMARK 465 ASP B 171 REMARK 465 PRO B 172 REMARK 465 ALA B 173 REMARK 465 GLY B 174 REMARK 465 PRO B 175 REMARK 465 ALA B 176 REMARK 465 SER B 177 REMARK 465 LYS B 178 REMARK 465 LEU B 179 REMARK 465 PHE B 180 REMARK 465 GLY B 181 REMARK 465 SER B 295 REMARK 465 GLU B 296 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 SG CYS A 239 S4 4K3 B 302 1.91 REMARK 500 SG CYS B 239 S4 4K3 B 303 1.99 REMARK 500 O THR B 157 NH2 ARG B 190 2.11 REMARK 500 OE1 GLU B 213 NH2 ARG B 217 2.15 REMARK 500 OD1 ASP B 168 NE2 GLN B 201 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 27 NE - CZ - NH1 ANGL. DEV. = 3.6 DEGREES REMARK 500 CYS B 62 CA - CB - SG ANGL. DEV. = 7.1 DEGREES REMARK 500 ARG B 142 NE - CZ - NH1 ANGL. DEV. = 3.9 DEGREES REMARK 500 ARG B 142 NE - CZ - NH2 ANGL. DEV. = -3.3 DEGREES REMARK 500 ARG B 190 NE - CZ - NH2 ANGL. DEV. = -4.0 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LYS A 30 130.67 -171.19 REMARK 500 ASP A 34 87.54 -162.83 REMARK 500 PHE A 39 -33.55 -132.19 REMARK 500 GLN A 64 -32.28 -130.74 REMARK 500 GLU A 70 -54.52 -21.57 REMARK 500 LYS A 87 74.05 -163.48 REMARK 500 ASP A 168 62.83 -117.46 REMARK 500 GLU A 203 -150.57 -99.06 REMARK 500 ASP A 208 56.10 -142.13 REMARK 500 TYR A 273 -56.41 -127.16 REMARK 500 ASP B 34 84.81 -162.68 REMARK 500 ASP B 60 45.24 36.78 REMARK 500 LYS B 87 88.06 -165.33 REMARK 500 ASP B 168 77.62 -116.66 REMARK 500 GLU B 203 -158.33 -93.55 REMARK 500 TYR B 273 -60.34 -132.05 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue S4M A 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue S4M B 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue 4K3 B 302 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue 4K3 B 303 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4YUV RELATED DB: PDB REMARK 900 RELATED ID: 4YUW RELATED DB: PDB REMARK 900 RELATED ID: 4YUX RELATED DB: PDB REMARK 900 RELATED ID: 4YUY RELATED DB: PDB REMARK 900 RELATED ID: 4YUZ RELATED DB: PDB REMARK 900 RELATED ID: 4YV0 RELATED DB: PDB REMARK 900 RELATED ID: 4YV1 RELATED DB: PDB DBREF 4YV2 A 1 296 UNP Q4DA73 Q4DA73_TRYCC 1 296 DBREF 4YV2 B 1 296 UNP Q4DA73 Q4DA73_TRYCC 1 296 SEQADV 4YV2 MET A -7 UNP Q4DA73 INITIATING METHIONINE SEQADV 4YV2 ALA A -6 UNP Q4DA73 EXPRESSION TAG SEQADV 4YV2 HIS A -5 UNP Q4DA73 EXPRESSION TAG SEQADV 4YV2 HIS A -4 UNP Q4DA73 EXPRESSION TAG SEQADV 4YV2 HIS A -3 UNP Q4DA73 EXPRESSION TAG SEQADV 4YV2 HIS A -2 UNP Q4DA73 EXPRESSION TAG SEQADV 4YV2 HIS A -1 UNP Q4DA73 EXPRESSION TAG SEQADV 4YV2 HIS A 0 UNP Q4DA73 EXPRESSION TAG SEQADV 4YV2 MET B -7 UNP Q4DA73 INITIATING METHIONINE SEQADV 4YV2 ALA B -6 UNP Q4DA73 EXPRESSION TAG SEQADV 4YV2 HIS B -5 UNP Q4DA73 EXPRESSION TAG SEQADV 4YV2 HIS B -4 UNP Q4DA73 EXPRESSION TAG SEQADV 4YV2 HIS B -3 UNP Q4DA73 EXPRESSION TAG SEQADV 4YV2 HIS B -2 UNP Q4DA73 EXPRESSION TAG SEQADV 4YV2 HIS B -1 UNP Q4DA73 EXPRESSION TAG SEQADV 4YV2 HIS B 0 UNP Q4DA73 EXPRESSION TAG SEQRES 1 A 304 MET ALA HIS HIS HIS HIS HIS HIS MET PRO GLY SER GLU SEQRES 2 A 304 LEU ILE SER GLY GLY TRP PHE ARG GLU GLU ASN ASP GLN SEQRES 3 A 304 TRP PRO GLY GLN ALA MET SER LEU ARG VAL GLU LYS VAL SEQRES 4 A 304 LEU TYR ASP ALA PRO THR LYS PHE GLN HIS LEU THR ILE SEQRES 5 A 304 PHE GLU SER ASP PRO LYS GLY PRO TRP GLY THR VAL MET SEQRES 6 A 304 ALA LEU ASP GLY CYS ILE GLN VAL THR ASP TYR ASP GLU SEQRES 7 A 304 PHE VAL TYR HIS GLU VAL LEU GLY HIS THR SER LEU CYS SEQRES 8 A 304 SER HIS PRO LYS PRO GLU ARG VAL LEU ILE ILE GLY GLY SEQRES 9 A 304 GLY ASP GLY GLY VAL LEU ARG GLU VAL LEU ARG HIS GLY SEQRES 10 A 304 THR VAL GLU HIS CYS ASP LEU VAL ASP ILE ASP GLY GLU SEQRES 11 A 304 VAL MET GLU GLN SER LYS GLN HIS PHE PRO GLN ILE SER SEQRES 12 A 304 ARG SER LEU ALA ASP PRO ARG ALA THR VAL ARG VAL GLY SEQRES 13 A 304 ASP GLY LEU ALA PHE VAL ARG GLN THR PRO ASP ASN THR SEQRES 14 A 304 TYR ASP VAL VAL ILE ILE ASP THR THR ASP PRO ALA GLY SEQRES 15 A 304 PRO ALA SER LYS LEU PHE GLY GLU ALA PHE TYR LYS ASP SEQRES 16 A 304 VAL LEU ARG ILE LEU LYS PRO ASP GLY ILE CYS CYS ASN SEQRES 17 A 304 GLN GLY GLU SER ILE TRP LEU ASP LEU GLU LEU ILE GLU SEQRES 18 A 304 LYS MET SER ARG PHE ILE ARG GLU THR GLY PHE ALA SER SEQRES 19 A 304 VAL GLN TYR ALA LEU MET HIS VAL PRO THR TYR PRO CYS SEQRES 20 A 304 GLY SER ILE GLY THR LEU VAL CYS SER LYS LYS ALA GLY SEQRES 21 A 304 VAL ASP VAL THR LYS PRO LEU ARG PRO VAL GLU ASP MET SEQRES 22 A 304 PRO PHE ALA LYS ASP LEU LYS TYR TYR ASP SER GLU MET SEQRES 23 A 304 HIS LYS ALA SER PHE ALA LEU PRO ARG PHE ALA ARG HIS SEQRES 24 A 304 ILE ASN ASN SER GLU SEQRES 1 B 304 MET ALA HIS HIS HIS HIS HIS HIS MET PRO GLY SER GLU SEQRES 2 B 304 LEU ILE SER GLY GLY TRP PHE ARG GLU GLU ASN ASP GLN SEQRES 3 B 304 TRP PRO GLY GLN ALA MET SER LEU ARG VAL GLU LYS VAL SEQRES 4 B 304 LEU TYR ASP ALA PRO THR LYS PHE GLN HIS LEU THR ILE SEQRES 5 B 304 PHE GLU SER ASP PRO LYS GLY PRO TRP GLY THR VAL MET SEQRES 6 B 304 ALA LEU ASP GLY CYS ILE GLN VAL THR ASP TYR ASP GLU SEQRES 7 B 304 PHE VAL TYR HIS GLU VAL LEU GLY HIS THR SER LEU CYS SEQRES 8 B 304 SER HIS PRO LYS PRO GLU ARG VAL LEU ILE ILE GLY GLY SEQRES 9 B 304 GLY ASP GLY GLY VAL LEU ARG GLU VAL LEU ARG HIS GLY SEQRES 10 B 304 THR VAL GLU HIS CYS ASP LEU VAL ASP ILE ASP GLY GLU SEQRES 11 B 304 VAL MET GLU GLN SER LYS GLN HIS PHE PRO GLN ILE SER SEQRES 12 B 304 ARG SER LEU ALA ASP PRO ARG ALA THR VAL ARG VAL GLY SEQRES 13 B 304 ASP GLY LEU ALA PHE VAL ARG GLN THR PRO ASP ASN THR SEQRES 14 B 304 TYR ASP VAL VAL ILE ILE ASP THR THR ASP PRO ALA GLY SEQRES 15 B 304 PRO ALA SER LYS LEU PHE GLY GLU ALA PHE TYR LYS ASP SEQRES 16 B 304 VAL LEU ARG ILE LEU LYS PRO ASP GLY ILE CYS CYS ASN SEQRES 17 B 304 GLN GLY GLU SER ILE TRP LEU ASP LEU GLU LEU ILE GLU SEQRES 18 B 304 LYS MET SER ARG PHE ILE ARG GLU THR GLY PHE ALA SER SEQRES 19 B 304 VAL GLN TYR ALA LEU MET HIS VAL PRO THR TYR PRO CYS SEQRES 20 B 304 GLY SER ILE GLY THR LEU VAL CYS SER LYS LYS ALA GLY SEQRES 21 B 304 VAL ASP VAL THR LYS PRO LEU ARG PRO VAL GLU ASP MET SEQRES 22 B 304 PRO PHE ALA LYS ASP LEU LYS TYR TYR ASP SER GLU MET SEQRES 23 B 304 HIS LYS ALA SER PHE ALA LEU PRO ARG PHE ALA ARG HIS SEQRES 24 B 304 ILE ASN ASN SER GLU HET S4M A 301 24 HET S4M B 301 24 HET 4K3 B 302 12 HET 4K3 B 303 12 HETNAM S4M 5'-[(S)-(3-AMINOPROPYL)(METHYL)-LAMBDA~4~-SULFANYL]-5'- HETNAM 2 S4M DEOXYADENOSINE HETNAM 4K3 N-PHENYL-3-SULFANYLPROPANAMIDE FORMUL 3 S4M 2(C14 H24 N6 O3 S) FORMUL 5 4K3 2(C9 H11 N O S) FORMUL 7 HOH *49(H2 O) HELIX 1 AA1 ASP A 69 CYS A 83 1 15 HELIX 2 AA2 GLY A 99 ARG A 107 1 9 HELIX 3 AA3 ASP A 120 PHE A 131 1 12 HELIX 4 AA4 PHE A 131 ARG A 136 1 6 HELIX 5 AA5 SER A 137 ASP A 140 5 4 HELIX 6 AA6 ASP A 149 GLN A 156 1 8 HELIX 7 AA7 ALA A 183 ILE A 191 1 9 HELIX 8 AA8 ASP A 208 GLY A 223 1 16 HELIX 9 AA9 TYR A 237 CYS A 239 5 3 HELIX 10 AB1 PRO A 261 MET A 265 5 5 HELIX 11 AB2 PHE A 267 LEU A 271 5 5 HELIX 12 AB3 ASP A 275 PHE A 283 1 9 HELIX 13 AB4 PRO A 286 ASN A 293 5 8 HELIX 14 AB5 ASP B 69 CYS B 83 1 15 HELIX 15 AB6 GLY B 99 LEU B 106 1 8 HELIX 16 AB7 ASP B 120 PHE B 131 1 12 HELIX 17 AB8 PHE B 131 ARG B 136 1 6 HELIX 18 AB9 SER B 137 ASP B 140 5 4 HELIX 19 AC1 ASP B 149 GLN B 156 1 8 HELIX 20 AC2 ALA B 183 ILE B 191 1 9 HELIX 21 AC3 ASP B 208 GLY B 223 1 16 HELIX 22 AC4 TYR B 237 CYS B 239 5 3 HELIX 23 AC5 PRO B 261 MET B 265 5 5 HELIX 24 AC6 PHE B 267 LEU B 271 5 5 HELIX 25 AC7 ASP B 275 SER B 282 1 8 HELIX 26 AC8 ALA B 289 ASN B 293 5 5 SHEET 1 AA1 4 TRP A 11 GLU A 15 0 SHEET 2 AA1 4 GLN A 22 PRO A 36 -1 O MET A 24 N GLU A 14 SHEET 3 AA1 4 GLN B 22 PRO B 36 -1 O SER B 25 N ALA A 23 SHEET 4 AA1 4 TRP B 11 GLU B 15 -1 N PHE B 12 O LEU B 26 SHEET 1 AA2 8 CYS A 62 THR A 66 0 SHEET 2 AA2 8 THR A 55 LEU A 59 -1 N MET A 57 O GLN A 64 SHEET 3 AA2 8 HIS A 41 SER A 47 -1 N THR A 43 O ALA A 58 SHEET 4 AA2 8 GLN A 22 PRO A 36 -1 N TYR A 33 O ILE A 44 SHEET 5 AA2 8 GLN B 22 PRO B 36 -1 O SER B 25 N ALA A 23 SHEET 6 AA2 8 HIS B 41 SER B 47 -1 O ILE B 44 N LEU B 32 SHEET 7 AA2 8 THR B 55 LEU B 59 -1 O ALA B 58 N THR B 43 SHEET 8 AA2 8 CYS B 62 THR B 66 -1 O GLN B 64 N MET B 57 SHEET 1 AA3 7 ALA A 143 VAL A 147 0 SHEET 2 AA3 7 HIS A 113 ASP A 118 1 N LEU A 116 O THR A 144 SHEET 3 AA3 7 ARG A 90 GLY A 95 1 N GLY A 95 O VAL A 117 SHEET 4 AA3 7 TYR A 162 ASP A 168 1 O ASP A 168 N ILE A 94 SHEET 5 AA3 7 LEU A 192 ASN A 200 1 O CYS A 199 N ILE A 167 SHEET 6 AA3 7 SER A 241 SER A 248 -1 O CYS A 247 N CYS A 198 SHEET 7 AA3 7 SER A 226 HIS A 233 -1 N GLN A 228 O VAL A 246 SHEET 1 AA4 7 ALA B 143 VAL B 147 0 SHEET 2 AA4 7 HIS B 113 ASP B 118 1 N CYS B 114 O THR B 144 SHEET 3 AA4 7 ARG B 90 GLY B 95 1 N GLY B 95 O VAL B 117 SHEET 4 AA4 7 TYR B 162 ASP B 168 1 O ILE B 166 N LEU B 92 SHEET 5 AA4 7 LEU B 192 ASN B 200 1 O CYS B 199 N ILE B 167 SHEET 6 AA4 7 SER B 241 SER B 248 -1 O CYS B 247 N CYS B 198 SHEET 7 AA4 7 SER B 226 HIS B 233 -1 N GLN B 228 O VAL B 246 SITE 1 AC1 15 GLN A 40 GLN A 64 TYR A 73 HIS A 74 SITE 2 AC1 15 GLY A 95 ASP A 98 VAL A 117 ASP A 118 SITE 3 AC1 15 ILE A 119 ASP A 120 VAL A 123 ASP A 149 SITE 4 AC1 15 GLY A 150 ASP A 168 THR A 169 SITE 1 AC2 14 GLN B 40 MET B 57 GLN B 64 HIS B 74 SITE 2 AC2 14 GLY B 95 ASP B 98 VAL B 117 ASP B 118 SITE 3 AC2 14 ILE B 119 ASP B 120 ASP B 149 GLY B 150 SITE 4 AC2 14 ASP B 168 THR B 169 SITE 1 AC3 7 CYS A 239 GLU B 14 MET B 24 SER B 25 SITE 2 AC3 7 LEU B 26 TRP B 53 ILE B 63 SITE 1 AC4 7 MET A 24 TRP A 53 ILE A 63 THR A 236 SITE 2 AC4 7 GLN B 22 MET B 24 CYS B 239 CRYST1 43.658 100.315 71.365 90.00 107.70 90.00 P 1 21 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.022905 0.000000 0.007309 0.00000 SCALE2 0.000000 0.009969 0.000000 0.00000 SCALE3 0.000000 0.000000 0.014709 0.00000