data_4YV3 # _entry.id 4YV3 # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.286 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code PDB 4YV3 WWPDB D_1000208138 # loop_ _pdbx_database_related.db_name _pdbx_database_related.details _pdbx_database_related.db_id _pdbx_database_related.content_type PDB ;3SWK is a similar fragment to the current PDB entry with additional eight N-terminal residues, forms native dimer of vimentin coil1B fragment ; 3SWK unspecified PDB ;4YPC is a similar fragment to the current PDB entry with additional five C-terminal residues, both form unnatural trimer of vimentin coil1B fragment ; 4YPC unspecified # _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.entry_id 4YV3 _pdbx_database_status.recvd_initial_deposition_date 2015-03-19 _pdbx_database_status.SG_entry N _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site PDBE _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Chernyatina, A.A.' 1 'Strelkov, S.V.' 2 # _citation.abstract ? _citation.abstract_id_CAS ? _citation.book_id_ISBN ? _citation.book_publisher ? _citation.book_publisher_city ? _citation.book_title ? _citation.coordinate_linkage ? _citation.country ? _citation.database_id_Medline ? _citation.details ? _citation.id primary _citation.journal_abbrev 'Meth. Enzymol.' _citation.journal_id_ASTM ? _citation.journal_id_CSD ? _citation.journal_id_ISSN 1557-7988 _citation.journal_full ? _citation.journal_issue ? _citation.journal_volume 568 _citation.language ? _citation.page_first 3 _citation.page_last 33 _citation.title 'How to Study Intermediate Filaments in Atomic Detail.' _citation.year 2016 _citation.database_id_CSD ? _citation.pdbx_database_id_DOI 10.1016/bs.mie.2015.09.024 _citation.pdbx_database_id_PubMed 26795465 _citation.unpublished_flag ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal primary 'Chernyatina, A.A.' 1 primary 'Hess, J.F.' 2 primary 'Guzenko, D.' 3 primary 'Voss, J.C.' 4 primary 'Strelkov, S.V.' 5 # _cell.angle_alpha 90.000 _cell.angle_alpha_esd ? _cell.angle_beta 104.330 _cell.angle_beta_esd ? _cell.angle_gamma 90.000 _cell.angle_gamma_esd ? _cell.entry_id 4YV3 _cell.details ? _cell.formula_units_Z ? _cell.length_a 39.060 _cell.length_a_esd ? _cell.length_b 60.950 _cell.length_b_esd ? _cell.length_c 48.900 _cell.length_c_esd ? _cell.volume ? _cell.volume_esd ? _cell.Z_PDB 6 _cell.reciprocal_angle_alpha ? _cell.reciprocal_angle_beta ? _cell.reciprocal_angle_gamma ? _cell.reciprocal_angle_alpha_esd ? _cell.reciprocal_angle_beta_esd ? _cell.reciprocal_angle_gamma_esd ? _cell.reciprocal_length_a ? _cell.reciprocal_length_b ? _cell.reciprocal_length_c ? _cell.reciprocal_length_a_esd ? _cell.reciprocal_length_b_esd ? _cell.reciprocal_length_c_esd ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 4YV3 _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' _symmetry.pdbx_full_space_group_name_H-M ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man Vimentin 9389.188 3 ? ? ? ? 2 non-polymer man 'SULFATE ION' 96.063 1 ? ? ? ? 3 non-polymer man 'CHLORIDE ION' 35.453 1 ? ? ? ? 4 water nat water 18.015 64 ? ? ? ? # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer yes _entity_poly.pdbx_seq_one_letter_code ;VDQLTNDKARVEVERDNLAEDI(MSE)RLREKLQEE(MSE)LQREEAENTLQSFRQDVDNASLARLDLERKVESLQEEIA FLKKLH ; _entity_poly.pdbx_seq_one_letter_code_can VDQLTNDKARVEVERDNLAEDIMRLREKLQEEMLQREEAENTLQSFRQDVDNASLARLDLERKVESLQEEIAFLKKLH _entity_poly.pdbx_strand_id A,B,C _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 VAL n 1 2 ASP n 1 3 GLN n 1 4 LEU n 1 5 THR n 1 6 ASN n 1 7 ASP n 1 8 LYS n 1 9 ALA n 1 10 ARG n 1 11 VAL n 1 12 GLU n 1 13 VAL n 1 14 GLU n 1 15 ARG n 1 16 ASP n 1 17 ASN n 1 18 LEU n 1 19 ALA n 1 20 GLU n 1 21 ASP n 1 22 ILE n 1 23 MSE n 1 24 ARG n 1 25 LEU n 1 26 ARG n 1 27 GLU n 1 28 LYS n 1 29 LEU n 1 30 GLN n 1 31 GLU n 1 32 GLU n 1 33 MSE n 1 34 LEU n 1 35 GLN n 1 36 ARG n 1 37 GLU n 1 38 GLU n 1 39 ALA n 1 40 GLU n 1 41 ASN n 1 42 THR n 1 43 LEU n 1 44 GLN n 1 45 SER n 1 46 PHE n 1 47 ARG n 1 48 GLN n 1 49 ASP n 1 50 VAL n 1 51 ASP n 1 52 ASN n 1 53 ALA n 1 54 SER n 1 55 LEU n 1 56 ALA n 1 57 ARG n 1 58 LEU n 1 59 ASP n 1 60 LEU n 1 61 GLU n 1 62 ARG n 1 63 LYS n 1 64 VAL n 1 65 GLU n 1 66 SER n 1 67 LEU n 1 68 GLN n 1 69 GLU n 1 70 GLU n 1 71 ILE n 1 72 ALA n 1 73 PHE n 1 74 LEU n 1 75 LYS n 1 76 LYS n 1 77 LEU n 1 78 HIS n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type 'Biological sequence' _entity_src_gen.pdbx_beg_seq_num 1 _entity_src_gen.pdbx_end_seq_num 83 _entity_src_gen.gene_src_common_name Human _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene VIM _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Homo sapiens' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 9606 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli BL21(DE3)' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 469008 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain ? _entity_src_gen.pdbx_host_org_variant Rosetta _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type plasmid _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name pETHSUL _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code VIME_HUMAN _struct_ref.pdbx_db_accession P08670 _struct_ref.pdbx_db_isoform ? _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code VDQLTNDKARVEVERDNLAEDIMRLREKLQEEMLQREEAENTLQSFRQDVDNASLARLDLERKVESLQEEIAFLKKLH _struct_ref.pdbx_align_begin 161 # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 4YV3 A 1 ? 78 ? P08670 161 ? 238 ? 161 238 2 1 4YV3 B 1 ? 78 ? P08670 161 ? 238 ? 161 238 3 1 4YV3 C 1 ? 78 ? P08670 161 ? 238 ? 161 238 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CL non-polymer . 'CHLORIDE ION' ? 'Cl -1' 35.453 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MSE 'L-peptide linking' n SELENOMETHIONINE ? 'C5 H11 N O2 Se' 196.106 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 SO4 non-polymer . 'SULFATE ION' ? 'O4 S -2' 96.063 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.absorpt_coefficient_mu ? _exptl.absorpt_correction_T_max ? _exptl.absorpt_correction_T_min ? _exptl.absorpt_correction_type ? _exptl.absorpt_process_details ? _exptl.entry_id 4YV3 _exptl.crystals_number ? _exptl.details ? _exptl.method 'X-RAY DIFFRACTION' _exptl.method_details ? # _exptl_crystal.colour ? _exptl_crystal.density_diffrn ? _exptl_crystal.density_Matthews 2.00 _exptl_crystal.density_method ? _exptl_crystal.density_percent_sol 38.57 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.id 1 _exptl_crystal.preparation ? _exptl_crystal.size_max ? _exptl_crystal.size_mid ? _exptl_crystal.size_min ? _exptl_crystal.size_rad ? _exptl_crystal.colour_lustre ? _exptl_crystal.colour_modifier ? _exptl_crystal.colour_primary ? _exptl_crystal.density_meas ? _exptl_crystal.density_meas_esd ? _exptl_crystal.density_meas_gt ? _exptl_crystal.density_meas_lt ? _exptl_crystal.density_meas_temp ? _exptl_crystal.density_meas_temp_esd ? _exptl_crystal.density_meas_temp_gt ? _exptl_crystal.density_meas_temp_lt ? _exptl_crystal.pdbx_crystal_image_url ? _exptl_crystal.pdbx_crystal_image_format ? _exptl_crystal.pdbx_mosaicity ? _exptl_crystal.pdbx_mosaicity_esd ? # _exptl_crystal_grow.apparatus ? _exptl_crystal_grow.atmosphere ? _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.details ? _exptl_crystal_grow.method 'VAPOR DIFFUSION, SITTING DROP' _exptl_crystal_grow.method_ref ? _exptl_crystal_grow.pH 6 _exptl_crystal_grow.pressure ? _exptl_crystal_grow.pressure_esd ? _exptl_crystal_grow.seeding ? _exptl_crystal_grow.seeding_ref ? _exptl_crystal_grow.temp 298 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.temp_esd ? _exptl_crystal_grow.time ? _exptl_crystal_grow.pdbx_details '10mg/ml protein in 10mM Tris-HCl pH 8, 38 mM NaCl mixed in v/v ratio 1:1 with ammonium sulphate 2.2M, sodium thiocyanate 0.2 M' _exptl_crystal_grow.pdbx_pH_range ? # _diffrn.ambient_environment ? _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.ambient_temp_esd ? _diffrn.crystal_id 1 _diffrn.crystal_support ? _diffrn.crystal_treatment ? _diffrn.details ? _diffrn.id 1 _diffrn.ambient_pressure ? _diffrn.ambient_pressure_esd ? _diffrn.ambient_pressure_gt ? _diffrn.ambient_pressure_lt ? _diffrn.ambient_temp_gt ? _diffrn.ambient_temp_lt ? # _diffrn_detector.details ? _diffrn_detector.detector CCD _diffrn_detector.diffrn_id 1 _diffrn_detector.type 'ADSC QUANTUM 315r' _diffrn_detector.area_resol_mean ? _diffrn_detector.dtime ? _diffrn_detector.pdbx_frames_total ? _diffrn_detector.pdbx_collection_time_total ? _diffrn_detector.pdbx_collection_date 2010-11-14 # _diffrn_radiation.collimation ? _diffrn_radiation.diffrn_id 1 _diffrn_radiation.filter_edge ? _diffrn_radiation.inhomogeneity ? _diffrn_radiation.monochromator ? _diffrn_radiation.polarisn_norm ? _diffrn_radiation.polarisn_ratio ? _diffrn_radiation.probe ? _diffrn_radiation.type ? _diffrn_radiation.xray_symbol ? _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.pdbx_wavelength_list ? _diffrn_radiation.pdbx_wavelength ? _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_analyzer ? _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 0.97895 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.current ? _diffrn_source.details ? _diffrn_source.diffrn_id 1 _diffrn_source.power ? _diffrn_source.size ? _diffrn_source.source SYNCHROTRON _diffrn_source.target ? _diffrn_source.type 'SOLEIL BEAMLINE PROXIMA 1' _diffrn_source.voltage ? _diffrn_source.take-off_angle ? _diffrn_source.pdbx_wavelength_list 0.97895 _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_synchrotron_beamline 'PROXIMA 1' _diffrn_source.pdbx_synchrotron_site SOLEIL # _reflns.B_iso_Wilson_estimate 36.230 _reflns.entry_id 4YV3 _reflns.data_reduction_details ? _reflns.data_reduction_method ? _reflns.d_resolution_high 2.000 _reflns.d_resolution_low 50 _reflns.details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.number_all ? _reflns.number_obs 29510 _reflns.observed_criterion ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.observed_criterion_I_max ? _reflns.observed_criterion_I_min ? _reflns.observed_criterion_sigma_F ? _reflns.observed_criterion_sigma_I -3.000 _reflns.percent_possible_obs 99.700 _reflns.R_free_details ? _reflns.Rmerge_F_all ? _reflns.Rmerge_F_obs 0.998 _reflns.Friedel_coverage ? _reflns.number_gt ? _reflns.threshold_expression ? _reflns.pdbx_redundancy 7.4 _reflns.pdbx_Rmerge_I_obs 0.091 _reflns.pdbx_Rmerge_I_all ? _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_av_sigmaI ? _reflns.pdbx_netI_over_sigmaI 11.980 _reflns.pdbx_res_netI_over_av_sigmaI_2 ? _reflns.pdbx_res_netI_over_sigmaI_2 ? _reflns.pdbx_chi_squared 0.983 _reflns.pdbx_scaling_rejects ? _reflns.pdbx_d_res_high_opt ? _reflns.pdbx_d_res_low_opt ? _reflns.pdbx_d_res_opt_method ? _reflns.phase_calculation_details ? _reflns.pdbx_Rrim_I_all 0.098 _reflns.pdbx_Rpim_I_all ? _reflns.pdbx_d_opt ? _reflns.pdbx_number_measured_all 219408 _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 _reflns.pdbx_CC_half ? _reflns.pdbx_R_split ? # loop_ _reflns_shell.d_res_high _reflns_shell.d_res_low _reflns_shell.meanI_over_sigI_all _reflns_shell.meanI_over_sigI_obs _reflns_shell.number_measured_all _reflns_shell.number_measured_obs _reflns_shell.number_possible _reflns_shell.number_unique_all _reflns_shell.number_unique_obs _reflns_shell.percent_possible_all _reflns_shell.percent_possible_obs _reflns_shell.Rmerge_F_all _reflns_shell.Rmerge_F_obs _reflns_shell.Rmerge_I_all _reflns_shell.Rmerge_I_obs _reflns_shell.meanI_over_sigI_gt _reflns_shell.meanI_over_uI_all _reflns_shell.meanI_over_uI_gt _reflns_shell.number_measured_gt _reflns_shell.number_unique_gt _reflns_shell.percent_possible_gt _reflns_shell.Rmerge_F_gt _reflns_shell.Rmerge_I_gt _reflns_shell.pdbx_redundancy _reflns_shell.pdbx_Rsym_value _reflns_shell.pdbx_chi_squared _reflns_shell.pdbx_netI_over_sigmaI_all _reflns_shell.pdbx_netI_over_sigmaI_obs _reflns_shell.pdbx_Rrim_I_all _reflns_shell.pdbx_Rpim_I_all _reflns_shell.pdbx_rejects _reflns_shell.pdbx_ordinal _reflns_shell.pdbx_diffrn_id _reflns_shell.pdbx_CC_half _reflns_shell.pdbx_R_split 2.000 2.100 ? 2.250 ? 28160 4057 ? 4024 99.200 ? ? 0.838 ? 0.895 ? ? ? ? ? ? ? ? 7 ? ? ? ? 0.966 ? 0 1 1 ? ? 2.100 2.200 ? 3.790 ? 25393 3334 ? 3326 99.800 ? ? 0.942 ? 0.543 ? ? ? ? ? ? ? ? ? ? ? ? ? 0.582 ? 0 2 1 ? ? 2.200 2.300 ? 5.150 ? 21098 2767 ? 2766 100.000 ? ? 0.967 ? 0.385 ? ? ? ? ? ? ? ? ? ? ? ? ? 0.413 ? 0 3 1 ? ? 2.300 2.400 ? 6.540 ? 17804 2330 ? 2336 100.000 ? ? 0.974 ? 0.300 ? ? ? ? ? ? ? ? ? ? ? ? ? 0.322 ? 0 4 1 ? ? 2.400 2.500 ? 8.090 ? 14977 1968 ? 1957 99.400 ? ? 0.988 ? 0.223 ? ? ? ? ? ? ? ? ? ? ? ? ? 0.239 ? 0 5 1 ? ? 2.500 2.700 ? 10.250 ? 23799 3123 ? 3124 100.000 ? ? 0.990 ? 0.173 ? ? ? ? ? ? ? ? ? ? ? ? ? 0.186 ? 0 6 1 ? ? 2.700 3.000 ? 14.470 ? 24917 3284 ? 3283 100.000 ? ? 0.997 ? 0.110 ? ? ? ? ? ? ? ? ? ? ? ? ? 0.118 ? 0 7 1 ? ? 3.000 4.000 ? 22.120 ? 37025 5033 ? 5024 99.800 ? ? 0.997 ? 0.071 ? ? ? ? ? ? ? ? ? ? ? ? ? 0.076 ? 0 8 1 ? ? 4.000 6.000 ? 26.060 ? 18707 2608 ? 2606 99.900 ? ? 0.997 ? 0.061 ? ? ? ? ? ? ? ? ? ? ? ? ? 0.066 ? 0 9 1 ? ? 6.000 9.000 ? 25.980 ? 5486 768 ? 765 99.600 ? ? 0.998 ? 0.061 ? ? ? ? ? ? ? ? ? ? ? ? ? 0.066 ? 0 10 1 ? ? 9.000 ? ? 27.400 ? 2042 326 ? 299 91.700 ? ? 0.996 ? 0.054 ? ? ? ? ? ? ? ? ? ? ? ? ? 0.059 ? 0 11 1 ? ? # _refine.aniso_B[1][1] ? _refine.aniso_B[1][2] ? _refine.aniso_B[1][3] ? _refine.aniso_B[2][2] ? _refine.aniso_B[2][3] ? _refine.aniso_B[3][3] ? _refine.B_iso_max 106.630 _refine.B_iso_mean 49.7377 _refine.B_iso_min 22.560 _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.details ? _refine.diff_density_max ? _refine.diff_density_max_esd ? _refine.diff_density_min ? _refine.diff_density_min_esd ? _refine.diff_density_rms ? _refine.diff_density_rms_esd ? _refine.entry_id 4YV3 _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.ls_abs_structure_details ? _refine.ls_abs_structure_Flack ? _refine.ls_abs_structure_Flack_esd ? _refine.ls_abs_structure_Rogers ? _refine.ls_abs_structure_Rogers_esd ? _refine.ls_d_res_high 2.0000 _refine.ls_d_res_low 47.3790 _refine.ls_extinction_coef ? _refine.ls_extinction_coef_esd ? _refine.ls_extinction_expression ? _refine.ls_extinction_method ? _refine.ls_goodness_of_fit_all ? _refine.ls_goodness_of_fit_all_esd ? _refine.ls_goodness_of_fit_obs ? _refine.ls_goodness_of_fit_obs_esd ? _refine.ls_hydrogen_treatment ? _refine.ls_matrix_type ? _refine.ls_number_constraints ? _refine.ls_number_parameters ? _refine.ls_number_reflns_all ? _refine.ls_number_reflns_obs 29468 _refine.ls_number_reflns_R_free 1441 _refine.ls_number_reflns_R_work 28027 _refine.ls_number_restraints ? _refine.ls_percent_reflns_obs 99.7200 _refine.ls_percent_reflns_R_free 4.8900 _refine.ls_R_factor_all ? _refine.ls_R_factor_obs 0.2568 _refine.ls_R_factor_R_free 0.2962 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_R_factor_R_work 0.2547 _refine.ls_R_Fsqd_factor_obs ? _refine.ls_R_I_factor_obs ? _refine.ls_redundancy_reflns_all ? _refine.ls_redundancy_reflns_obs ? _refine.ls_restrained_S_all ? _refine.ls_restrained_S_obs ? _refine.ls_shift_over_esd_max ? _refine.ls_shift_over_esd_mean ? _refine.ls_structure_factor_coef ? _refine.ls_weighting_details ? _refine.ls_weighting_scheme ? _refine.ls_wR_factor_all ? _refine.ls_wR_factor_obs ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.occupancy_max ? _refine.occupancy_min ? _refine.solvent_model_details 'FLAT BULK SOLVENT MODEL' _refine.solvent_model_param_bsol ? _refine.solvent_model_param_ksol ? _refine.ls_R_factor_gt ? _refine.ls_goodness_of_fit_gt ? _refine.ls_goodness_of_fit_ref ? _refine.ls_shift_over_su_max ? _refine.ls_shift_over_su_max_lt ? _refine.ls_shift_over_su_mean ? _refine.ls_shift_over_su_mean_lt ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F 1.930 _refine.pdbx_ls_sigma_Fsqd ? _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_ls_cross_valid_method 'FREE R-VALUE' _refine.pdbx_method_to_determine_struct SAD _refine.pdbx_starting_model ? _refine.pdbx_stereochemistry_target_values ML _refine.pdbx_R_Free_selection_details ? _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.pdbx_solvent_vdw_probe_radii 1.1100 _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii 0.9000 _refine.pdbx_real_space_R ? _refine.pdbx_density_correlation ? _refine.pdbx_pd_number_of_powder_patterns ? _refine.pdbx_pd_number_of_points ? _refine.pdbx_pd_meas_number_of_points ? _refine.pdbx_pd_proc_ls_prof_R_factor ? _refine.pdbx_pd_proc_ls_prof_wR_factor ? _refine.pdbx_pd_Marquardt_correlation_coeff ? _refine.pdbx_pd_Fsqrd_R_factor ? _refine.pdbx_pd_ls_matrix_band_width ? _refine.pdbx_overall_phase_error 36.0900 _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_diffrn_id 1 _refine.overall_SU_B ? _refine.overall_SU_ML 0.3400 _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_average_fsc_overall ? _refine.pdbx_average_fsc_work ? _refine.pdbx_average_fsc_free ? # _refine_hist.cycle_id final _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.d_res_high 2.0000 _refine_hist.d_res_low 47.3790 _refine_hist.pdbx_number_atoms_ligand 6 _refine_hist.number_atoms_solvent 64 _refine_hist.number_atoms_total 1866 _refine_hist.pdbx_number_residues_total 215 _refine_hist.pdbx_B_iso_mean_ligand 68.81 _refine_hist.pdbx_B_iso_mean_solvent 54.31 _refine_hist.pdbx_number_atoms_protein 1796 _refine_hist.pdbx_number_atoms_nucleic_acid 0 # loop_ _refine_ls_restr.pdbx_refine_id _refine_ls_restr.criterion _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.number _refine_ls_restr.rejects _refine_ls_restr.type _refine_ls_restr.weight _refine_ls_restr.pdbx_restraint_function 'X-RAY DIFFRACTION' ? 0.004 ? 1889 ? f_bond_d ? ? 'X-RAY DIFFRACTION' ? 0.487 ? 2534 ? f_angle_d ? ? 'X-RAY DIFFRACTION' ? 0.019 ? 280 ? f_chiral_restr ? ? 'X-RAY DIFFRACTION' ? 0.002 ? 349 ? f_plane_restr ? ? 'X-RAY DIFFRACTION' ? 10.504 ? 791 ? f_dihedral_angle_d ? ? # loop_ _refine_ls_shell.pdbx_refine_id _refine_ls_shell.d_res_high _refine_ls_shell.d_res_low _refine_ls_shell.number_reflns_all _refine_ls_shell.number_reflns_obs _refine_ls_shell.number_reflns_R_free _refine_ls_shell.number_reflns_R_work _refine_ls_shell.percent_reflns_obs _refine_ls_shell.percent_reflns_R_free _refine_ls_shell.R_factor_all _refine_ls_shell.R_factor_obs _refine_ls_shell.R_factor_R_free _refine_ls_shell.R_factor_R_free_error _refine_ls_shell.R_factor_R_work _refine_ls_shell.redundancy_reflns_all _refine_ls_shell.redundancy_reflns_obs _refine_ls_shell.wR_factor_all _refine_ls_shell.wR_factor_obs _refine_ls_shell.wR_factor_R_free _refine_ls_shell.wR_factor_R_work _refine_ls_shell.pdbx_total_number_of_bins_used _refine_ls_shell.pdbx_phase_error _refine_ls_shell.pdbx_fsc_work _refine_ls_shell.pdbx_fsc_free 'X-RAY DIFFRACTION' 2.0000 2.0715 2948 . 145 2803 99.0000 . . . 0.4106 . 0.3390 . . . . . . 10 . . . 'X-RAY DIFFRACTION' 2.0715 2.1544 2974 . 156 2818 100.0000 . . . 0.3777 . 0.3184 . . . . . . 10 . . . 'X-RAY DIFFRACTION' 2.1544 2.2525 2922 . 160 2762 100.0000 . . . 0.3243 . 0.2908 . . . . . . 10 . . . 'X-RAY DIFFRACTION' 2.2525 2.3712 2965 . 145 2820 100.0000 . . . 0.3882 . 0.2875 . . . . . . 10 . . . 'X-RAY DIFFRACTION' 2.3712 2.5198 2924 . 120 2804 100.0000 . . . 0.3047 . 0.2868 . . . . . . 10 . . . 'X-RAY DIFFRACTION' 2.5198 2.7143 2976 . 147 2829 100.0000 . . . 0.3680 . 0.2768 . . . . . . 10 . . . 'X-RAY DIFFRACTION' 2.7143 2.9874 2942 . 124 2818 100.0000 . . . 0.2911 . 0.2710 . . . . . . 10 . . . 'X-RAY DIFFRACTION' 2.9874 3.4196 2952 . 153 2799 100.0000 . . . 0.3066 . 0.2693 . . . . . . 10 . . . 'X-RAY DIFFRACTION' 3.4196 4.3079 2965 . 149 2816 100.0000 . . . 0.2482 . 0.2123 . . . . . . 10 . . . 'X-RAY DIFFRACTION' 4.3079 47.3918 2900 . 142 2758 99.0000 . . . 0.2651 . 0.2344 . . . . . . 10 . . . # _struct.entry_id 4YV3 _struct.title 'Trimeric crystal structure of vimentin coil1B fragment' _struct.pdbx_descriptor vimentin _struct.pdbx_model_details ? _struct.pdbx_formula_weight ? _struct.pdbx_formula_weight_method ? _struct.pdbx_model_type_details ? _struct.pdbx_CASP_flag ? # _struct_keywords.entry_id 4YV3 _struct_keywords.text 'cytoskeleton, intermediate filament, vimentin, alpha-helical coiled-coil trimer, structural protein' _struct_keywords.pdbx_keywords 'STRUCTURAL PROTEIN' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 1 ? C N N 1 ? D N N 2 ? E N N 3 ? F N N 4 ? G N N 4 ? H N N 4 ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 AA1 ASP A 2 ? HIS A 78 ? ASP A 162 HIS A 238 1 ? 77 HELX_P HELX_P2 AA2 THR B 5 ? LEU B 77 ? THR B 165 LEU B 237 1 ? 73 HELX_P HELX_P3 AA3 LEU C 18 ? LEU C 77 ? LEU C 178 LEU C 237 1 ? 60 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale1 covale both ? A ILE 22 C ? ? ? 1_555 A MSE 23 N ? ? A ILE 182 A MSE 183 1_555 ? ? ? ? ? ? ? 1.329 ? covale2 covale both ? A MSE 23 C ? ? ? 1_555 A ARG 24 N ? ? A MSE 183 A ARG 184 1_555 ? ? ? ? ? ? ? 1.329 ? covale3 covale both ? A GLU 32 C ? ? ? 1_555 A MSE 33 N ? ? A GLU 192 A MSE 193 1_555 ? ? ? ? ? ? ? 1.333 ? covale4 covale both ? A MSE 33 C ? ? ? 1_555 A LEU 34 N ? ? A MSE 193 A LEU 194 1_555 ? ? ? ? ? ? ? 1.332 ? covale5 covale none ? A HIS 78 CE1 ? ? ? 1_555 D SO4 . O2 ? ? A HIS 238 A SO4 301 1_555 ? ? ? ? ? ? ? 1.503 ? covale6 covale both ? B ILE 22 C ? ? ? 1_555 B MSE 23 N ? ? B ILE 182 B MSE 183 1_555 ? ? ? ? ? ? ? 1.328 ? covale7 covale both ? B MSE 23 C ? ? ? 1_555 B ARG 24 N ? ? B MSE 183 B ARG 184 1_555 ? ? ? ? ? ? ? 1.329 ? covale8 covale both ? B GLU 32 C ? ? ? 1_555 B MSE 33 N A ? B GLU 192 B MSE 193 1_555 ? ? ? ? ? ? ? 1.330 ? covale9 covale both ? B GLU 32 C ? ? ? 1_555 B MSE 33 N B ? B GLU 192 B MSE 193 1_555 ? ? ? ? ? ? ? 1.329 ? covale10 covale both ? B MSE 33 C A ? ? 1_555 B LEU 34 N ? ? B MSE 193 B LEU 194 1_555 ? ? ? ? ? ? ? 1.330 ? covale11 covale both ? B MSE 33 C B ? ? 1_555 B LEU 34 N ? ? B MSE 193 B LEU 194 1_555 ? ? ? ? ? ? ? 1.331 ? covale12 covale both ? C ILE 22 C ? ? ? 1_555 C MSE 23 N ? ? C ILE 182 C MSE 183 1_555 ? ? ? ? ? ? ? 1.330 ? covale13 covale both ? C MSE 23 C ? ? ? 1_555 C ARG 24 N ? ? C MSE 183 C ARG 184 1_555 ? ? ? ? ? ? ? 1.330 ? covale14 covale both ? C GLU 32 C ? ? ? 1_555 C MSE 33 N ? ? C GLU 192 C MSE 193 1_555 ? ? ? ? ? ? ? 1.331 ? covale15 covale both ? C MSE 33 C ? ? ? 1_555 C LEU 34 N ? ? C MSE 193 C LEU 194 1_555 ? ? ? ? ? ? ? 1.333 ? # _struct_conn_type.id covale _struct_conn_type.criteria ? _struct_conn_type.reference ? # loop_ _struct_site.id _struct_site.pdbx_evidence_code _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _struct_site.pdbx_auth_ins_code _struct_site.pdbx_num_residues _struct_site.details AC1 Software A SO4 301 ? 4 'binding site for residue SO4 A 301' AC2 Software B CL 301 ? 3 'binding site for residue CL B 301' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 4 HIS A 78 ? HIS A 238 . ? 1_555 ? 2 AC1 4 HIS B 78 ? HIS B 238 . ? 1_555 ? 3 AC1 4 LEU C 77 ? LEU C 237 . ? 1_555 ? 4 AC1 4 HIS C 78 ? HIS C 238 . ? 1_555 ? 5 AC2 3 LEU A 60 ? LEU A 220 . ? 1_555 ? 6 AC2 3 ARG B 57 ? ARG B 217 . ? 1_555 ? 7 AC2 3 ARG C 57 ? ARG C 217 . ? 1_555 ? # _atom_sites.entry_id 4YV3 _atom_sites.fract_transf_matrix[1][1] 0.025602 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.006540 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.016407 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.021107 _atom_sites.fract_transf_vector[1] 0.000000 _atom_sites.fract_transf_vector[2] 0.000000 _atom_sites.fract_transf_vector[3] 0.000000 # loop_ _atom_type.symbol C CL N O S SE # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 VAL 1 161 ? ? ? A . n A 1 2 ASP 2 162 162 ASP ASP A . n A 1 3 GLN 3 163 163 GLN GLN A . n A 1 4 LEU 4 164 164 LEU LEU A . n A 1 5 THR 5 165 165 THR THR A . n A 1 6 ASN 6 166 166 ASN ASN A . n A 1 7 ASP 7 167 167 ASP ASP A . n A 1 8 LYS 8 168 168 LYS LYS A . n A 1 9 ALA 9 169 169 ALA ALA A . n A 1 10 ARG 10 170 170 ARG ARG A . n A 1 11 VAL 11 171 171 VAL VAL A . n A 1 12 GLU 12 172 172 GLU GLU A . n A 1 13 VAL 13 173 173 VAL VAL A . n A 1 14 GLU 14 174 174 GLU GLU A . n A 1 15 ARG 15 175 175 ARG ARG A . n A 1 16 ASP 16 176 176 ASP ASP A . n A 1 17 ASN 17 177 177 ASN ASN A . n A 1 18 LEU 18 178 178 LEU LEU A . n A 1 19 ALA 19 179 179 ALA ALA A . n A 1 20 GLU 20 180 180 GLU GLU A . n A 1 21 ASP 21 181 181 ASP ASP A . n A 1 22 ILE 22 182 182 ILE ILE A . n A 1 23 MSE 23 183 183 MSE MSE A . n A 1 24 ARG 24 184 184 ARG ARG A . n A 1 25 LEU 25 185 185 LEU LEU A . n A 1 26 ARG 26 186 186 ARG ARG A . n A 1 27 GLU 27 187 187 GLU GLU A . n A 1 28 LYS 28 188 188 LYS LYS A . n A 1 29 LEU 29 189 189 LEU LEU A . n A 1 30 GLN 30 190 190 GLN GLN A . n A 1 31 GLU 31 191 191 GLU GLU A . n A 1 32 GLU 32 192 192 GLU GLU A . n A 1 33 MSE 33 193 193 MSE MSE A . n A 1 34 LEU 34 194 194 LEU LEU A . n A 1 35 GLN 35 195 195 GLN GLN A . n A 1 36 ARG 36 196 196 ARG ARG A . n A 1 37 GLU 37 197 197 GLU GLU A . n A 1 38 GLU 38 198 198 GLU GLU A . n A 1 39 ALA 39 199 199 ALA ALA A . n A 1 40 GLU 40 200 200 GLU GLU A . n A 1 41 ASN 41 201 201 ASN ASN A . n A 1 42 THR 42 202 202 THR THR A . n A 1 43 LEU 43 203 203 LEU LEU A . n A 1 44 GLN 44 204 204 GLN GLN A . n A 1 45 SER 45 205 205 SER SER A . n A 1 46 PHE 46 206 206 PHE PHE A . n A 1 47 ARG 47 207 207 ARG ARG A . n A 1 48 GLN 48 208 208 GLN GLN A . n A 1 49 ASP 49 209 209 ASP ASP A . n A 1 50 VAL 50 210 210 VAL VAL A . n A 1 51 ASP 51 211 211 ASP ASP A . n A 1 52 ASN 52 212 212 ASN ASN A . n A 1 53 ALA 53 213 213 ALA ALA A . n A 1 54 SER 54 214 214 SER SER A . n A 1 55 LEU 55 215 215 LEU LEU A . n A 1 56 ALA 56 216 216 ALA ALA A . n A 1 57 ARG 57 217 217 ARG ARG A . n A 1 58 LEU 58 218 218 LEU LEU A . n A 1 59 ASP 59 219 219 ASP ASP A . n A 1 60 LEU 60 220 220 LEU LEU A . n A 1 61 GLU 61 221 221 GLU GLU A . n A 1 62 ARG 62 222 222 ARG ARG A . n A 1 63 LYS 63 223 223 LYS LYS A . n A 1 64 VAL 64 224 224 VAL VAL A . n A 1 65 GLU 65 225 225 GLU GLU A . n A 1 66 SER 66 226 226 SER SER A . n A 1 67 LEU 67 227 227 LEU LEU A . n A 1 68 GLN 68 228 228 GLN GLN A . n A 1 69 GLU 69 229 229 GLU GLU A . n A 1 70 GLU 70 230 230 GLU GLU A . n A 1 71 ILE 71 231 231 ILE ILE A . n A 1 72 ALA 72 232 232 ALA ALA A . n A 1 73 PHE 73 233 233 PHE PHE A . n A 1 74 LEU 74 234 234 LEU LEU A . n A 1 75 LYS 75 235 235 LYS LYS A . n A 1 76 LYS 76 236 236 LYS LYS A . n A 1 77 LEU 77 237 237 LEU LEU A . n A 1 78 HIS 78 238 238 HIS HIS A . n B 1 1 VAL 1 161 ? ? ? B . n B 1 2 ASP 2 162 ? ? ? B . n B 1 3 GLN 3 163 ? ? ? B . n B 1 4 LEU 4 164 164 LEU LEU B . n B 1 5 THR 5 165 165 THR THR B . n B 1 6 ASN 6 166 166 ASN ASN B . n B 1 7 ASP 7 167 167 ASP ASP B . n B 1 8 LYS 8 168 168 LYS LYS B . n B 1 9 ALA 9 169 169 ALA ALA B . n B 1 10 ARG 10 170 170 ARG ARG B . n B 1 11 VAL 11 171 171 VAL VAL B . n B 1 12 GLU 12 172 172 GLU GLU B . n B 1 13 VAL 13 173 173 VAL VAL B . n B 1 14 GLU 14 174 174 GLU GLU B . n B 1 15 ARG 15 175 175 ARG ARG B . n B 1 16 ASP 16 176 176 ASP ASP B . n B 1 17 ASN 17 177 177 ASN ASN B . n B 1 18 LEU 18 178 178 LEU LEU B . n B 1 19 ALA 19 179 179 ALA ALA B . n B 1 20 GLU 20 180 180 GLU GLU B . n B 1 21 ASP 21 181 181 ASP ASP B . n B 1 22 ILE 22 182 182 ILE ILE B . n B 1 23 MSE 23 183 183 MSE MSE B . n B 1 24 ARG 24 184 184 ARG ARG B . n B 1 25 LEU 25 185 185 LEU LEU B . n B 1 26 ARG 26 186 186 ARG ARG B . n B 1 27 GLU 27 187 187 GLU GLU B . n B 1 28 LYS 28 188 188 LYS LYS B . n B 1 29 LEU 29 189 189 LEU LEU B . n B 1 30 GLN 30 190 190 GLN GLN B . n B 1 31 GLU 31 191 191 GLU GLU B . n B 1 32 GLU 32 192 192 GLU GLU B . n B 1 33 MSE 33 193 193 MSE MSE B . n B 1 34 LEU 34 194 194 LEU LEU B . n B 1 35 GLN 35 195 195 GLN GLN B . n B 1 36 ARG 36 196 196 ARG ARG B . n B 1 37 GLU 37 197 197 GLU GLU B . n B 1 38 GLU 38 198 198 GLU GLU B . n B 1 39 ALA 39 199 199 ALA ALA B . n B 1 40 GLU 40 200 200 GLU GLU B . n B 1 41 ASN 41 201 201 ASN ASN B . n B 1 42 THR 42 202 202 THR THR B . n B 1 43 LEU 43 203 203 LEU LEU B . n B 1 44 GLN 44 204 204 GLN GLN B . n B 1 45 SER 45 205 205 SER SER B . n B 1 46 PHE 46 206 206 PHE PHE B . n B 1 47 ARG 47 207 207 ARG ARG B . n B 1 48 GLN 48 208 208 GLN GLN B . n B 1 49 ASP 49 209 209 ASP ASP B . n B 1 50 VAL 50 210 210 VAL VAL B . n B 1 51 ASP 51 211 211 ASP ASP B . n B 1 52 ASN 52 212 212 ASN ASN B . n B 1 53 ALA 53 213 213 ALA ALA B . n B 1 54 SER 54 214 214 SER SER B . n B 1 55 LEU 55 215 215 LEU LEU B . n B 1 56 ALA 56 216 216 ALA ALA B . n B 1 57 ARG 57 217 217 ARG ARG B . n B 1 58 LEU 58 218 218 LEU LEU B . n B 1 59 ASP 59 219 219 ASP ASP B . n B 1 60 LEU 60 220 220 LEU LEU B . n B 1 61 GLU 61 221 221 GLU GLU B . n B 1 62 ARG 62 222 222 ARG ARG B . n B 1 63 LYS 63 223 223 LYS LYS B . n B 1 64 VAL 64 224 224 VAL VAL B . n B 1 65 GLU 65 225 225 GLU GLU B . n B 1 66 SER 66 226 226 SER SER B . n B 1 67 LEU 67 227 227 LEU LEU B . n B 1 68 GLN 68 228 228 GLN GLN B . n B 1 69 GLU 69 229 229 GLU GLU B . n B 1 70 GLU 70 230 230 GLU GLU B . n B 1 71 ILE 71 231 231 ILE ILE B . n B 1 72 ALA 72 232 232 ALA ALA B . n B 1 73 PHE 73 233 233 PHE PHE B . n B 1 74 LEU 74 234 234 LEU LEU B . n B 1 75 LYS 75 235 235 LYS LYS B . n B 1 76 LYS 76 236 236 LYS LYS B . n B 1 77 LEU 77 237 237 LEU LEU B . n B 1 78 HIS 78 238 238 HIS HIS B . n C 1 1 VAL 1 161 ? ? ? C . n C 1 2 ASP 2 162 ? ? ? C . n C 1 3 GLN 3 163 ? ? ? C . n C 1 4 LEU 4 164 ? ? ? C . n C 1 5 THR 5 165 ? ? ? C . n C 1 6 ASN 6 166 ? ? ? C . n C 1 7 ASP 7 167 ? ? ? C . n C 1 8 LYS 8 168 ? ? ? C . n C 1 9 ALA 9 169 ? ? ? C . n C 1 10 ARG 10 170 ? ? ? C . n C 1 11 VAL 11 171 ? ? ? C . n C 1 12 GLU 12 172 ? ? ? C . n C 1 13 VAL 13 173 ? ? ? C . n C 1 14 GLU 14 174 ? ? ? C . n C 1 15 ARG 15 175 ? ? ? C . n C 1 16 ASP 16 176 176 ASP ASP C . n C 1 17 ASN 17 177 177 ASN ASN C . n C 1 18 LEU 18 178 178 LEU LEU C . n C 1 19 ALA 19 179 179 ALA ALA C . n C 1 20 GLU 20 180 180 GLU GLU C . n C 1 21 ASP 21 181 181 ASP ASP C . n C 1 22 ILE 22 182 182 ILE ILE C . n C 1 23 MSE 23 183 183 MSE MSE C . n C 1 24 ARG 24 184 184 ARG ARG C . n C 1 25 LEU 25 185 185 LEU LEU C . n C 1 26 ARG 26 186 186 ARG ARG C . n C 1 27 GLU 27 187 187 GLU GLU C . n C 1 28 LYS 28 188 188 LYS LYS C . n C 1 29 LEU 29 189 189 LEU LEU C . n C 1 30 GLN 30 190 190 GLN GLN C . n C 1 31 GLU 31 191 191 GLU GLU C . n C 1 32 GLU 32 192 192 GLU GLU C . n C 1 33 MSE 33 193 193 MSE MSE C . n C 1 34 LEU 34 194 194 LEU LEU C . n C 1 35 GLN 35 195 195 GLN GLN C . n C 1 36 ARG 36 196 196 ARG ARG C . n C 1 37 GLU 37 197 197 GLU GLU C . n C 1 38 GLU 38 198 198 GLU GLU C . n C 1 39 ALA 39 199 199 ALA ALA C . n C 1 40 GLU 40 200 200 GLU GLU C . n C 1 41 ASN 41 201 201 ASN ASN C . n C 1 42 THR 42 202 202 THR THR C . n C 1 43 LEU 43 203 203 LEU LEU C . n C 1 44 GLN 44 204 204 GLN GLN C . n C 1 45 SER 45 205 205 SER SER C . n C 1 46 PHE 46 206 206 PHE PHE C . n C 1 47 ARG 47 207 207 ARG ARG C . n C 1 48 GLN 48 208 208 GLN GLN C . n C 1 49 ASP 49 209 209 ASP ASP C . n C 1 50 VAL 50 210 210 VAL VAL C . n C 1 51 ASP 51 211 211 ASP ASP C . n C 1 52 ASN 52 212 212 ASN ASN C . n C 1 53 ALA 53 213 213 ALA ALA C . n C 1 54 SER 54 214 214 SER SER C . n C 1 55 LEU 55 215 215 LEU LEU C . n C 1 56 ALA 56 216 216 ALA ALA C . n C 1 57 ARG 57 217 217 ARG ARG C . n C 1 58 LEU 58 218 218 LEU LEU C . n C 1 59 ASP 59 219 219 ASP ASP C . n C 1 60 LEU 60 220 220 LEU LEU C . n C 1 61 GLU 61 221 221 GLU GLU C . n C 1 62 ARG 62 222 222 ARG ARG C . n C 1 63 LYS 63 223 223 LYS LYS C . n C 1 64 VAL 64 224 224 VAL VAL C . n C 1 65 GLU 65 225 225 GLU GLU C . n C 1 66 SER 66 226 226 SER SER C . n C 1 67 LEU 67 227 227 LEU LEU C . n C 1 68 GLN 68 228 228 GLN GLN C . n C 1 69 GLU 69 229 229 GLU GLU C . n C 1 70 GLU 70 230 230 GLU GLU C . n C 1 71 ILE 71 231 231 ILE ILE C . n C 1 72 ALA 72 232 232 ALA ALA C . n C 1 73 PHE 73 233 233 PHE PHE C . n C 1 74 LEU 74 234 234 LEU LEU C . n C 1 75 LYS 75 235 235 LYS LYS C . n C 1 76 LYS 76 236 236 LYS LYS C . n C 1 77 LEU 77 237 237 LEU LEU C . n C 1 78 HIS 78 238 238 HIS HIS C . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code D 2 SO4 1 301 1 SO4 SO4 A . E 3 CL 1 301 1 CL CL B . F 4 HOH 1 401 10 HOH HOH A . F 4 HOH 2 402 64 HOH HOH A . F 4 HOH 3 403 2 HOH HOH A . F 4 HOH 4 404 7 HOH HOH A . F 4 HOH 5 405 30 HOH HOH A . F 4 HOH 6 406 28 HOH HOH A . F 4 HOH 7 407 20 HOH HOH A . F 4 HOH 8 408 26 HOH HOH A . F 4 HOH 9 409 46 HOH HOH A . F 4 HOH 10 410 6 HOH HOH A . F 4 HOH 11 411 9 HOH HOH A . F 4 HOH 12 412 14 HOH HOH A . F 4 HOH 13 413 17 HOH HOH A . F 4 HOH 14 414 19 HOH HOH A . F 4 HOH 15 415 23 HOH HOH A . F 4 HOH 16 416 25 HOH HOH A . F 4 HOH 17 417 33 HOH HOH A . F 4 HOH 18 418 38 HOH HOH A . F 4 HOH 19 419 39 HOH HOH A . F 4 HOH 20 420 45 HOH HOH A . F 4 HOH 21 421 53 HOH HOH A . F 4 HOH 22 422 54 HOH HOH A . F 4 HOH 23 423 59 HOH HOH A . F 4 HOH 24 424 63 HOH HOH A . G 4 HOH 1 401 4 HOH HOH B . G 4 HOH 2 402 42 HOH HOH B . G 4 HOH 3 403 60 HOH HOH B . G 4 HOH 4 404 58 HOH HOH B . G 4 HOH 5 405 22 HOH HOH B . G 4 HOH 6 406 5 HOH HOH B . G 4 HOH 7 407 67 HOH HOH B . G 4 HOH 8 408 31 HOH HOH B . G 4 HOH 9 409 16 HOH HOH B . G 4 HOH 10 410 43 HOH HOH B . G 4 HOH 11 411 1 HOH HOH B . G 4 HOH 12 412 57 HOH HOH B . G 4 HOH 13 413 61 HOH HOH B . G 4 HOH 14 414 48 HOH HOH B . G 4 HOH 15 415 44 HOH HOH B . G 4 HOH 16 416 66 HOH HOH B . G 4 HOH 17 417 65 HOH HOH B . G 4 HOH 18 418 68 HOH HOH B . G 4 HOH 19 419 50 HOH HOH B . G 4 HOH 20 420 56 HOH HOH B . G 4 HOH 21 421 41 HOH HOH B . G 4 HOH 22 422 37 HOH HOH B . G 4 HOH 23 423 15 HOH HOH B . G 4 HOH 24 424 21 HOH HOH B . G 4 HOH 25 425 29 HOH HOH B . G 4 HOH 26 426 40 HOH HOH B . H 4 HOH 1 301 55 HOH HOH C . H 4 HOH 2 302 34 HOH HOH C . H 4 HOH 3 303 27 HOH HOH C . H 4 HOH 4 304 12 HOH HOH C . H 4 HOH 5 305 18 HOH HOH C . H 4 HOH 6 306 51 HOH HOH C . H 4 HOH 7 307 32 HOH HOH C . H 4 HOH 8 308 35 HOH HOH C . H 4 HOH 9 309 13 HOH HOH C . H 4 HOH 10 310 8 HOH HOH C . H 4 HOH 11 311 47 HOH HOH C . H 4 HOH 12 312 49 HOH HOH C . H 4 HOH 13 313 52 HOH HOH C . H 4 HOH 14 314 62 HOH HOH C . # loop_ _pdbx_struct_mod_residue.id _pdbx_struct_mod_residue.label_asym_id _pdbx_struct_mod_residue.label_comp_id _pdbx_struct_mod_residue.label_seq_id _pdbx_struct_mod_residue.auth_asym_id _pdbx_struct_mod_residue.auth_comp_id _pdbx_struct_mod_residue.auth_seq_id _pdbx_struct_mod_residue.PDB_ins_code _pdbx_struct_mod_residue.parent_comp_id _pdbx_struct_mod_residue.details 1 A MSE 23 A MSE 183 ? MET 'modified residue' 2 A MSE 33 A MSE 193 ? MET 'modified residue' 3 B MSE 23 B MSE 183 ? MET 'modified residue' 4 B MSE 33 B MSE 193 ? MET 'modified residue' 5 C MSE 23 C MSE 183 ? MET 'modified residue' 6 C MSE 33 C MSE 193 ? MET 'modified residue' # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details trimeric _pdbx_struct_assembly.oligomeric_count 3 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 1 'ABSA (A^2)' 7700 ? 1 MORE -100 ? 1 'SSA (A^2)' 14290 ? # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2015-12-02 2 'Structure model' 1 1 2016-02-03 3 'Structure model' 1 2 2017-10-11 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Database references' 2 3 'Structure model' 'Data collection' # _pdbx_audit_revision_category.ordinal 1 _pdbx_audit_revision_category.revision_ordinal 3 _pdbx_audit_revision_category.data_content_type 'Structure model' _pdbx_audit_revision_category.category reflns_shell # _pdbx_audit_revision_item.ordinal 1 _pdbx_audit_revision_item.revision_ordinal 3 _pdbx_audit_revision_item.data_content_type 'Structure model' _pdbx_audit_revision_item.item '_reflns_shell.percent_possible_all' # loop_ _software.citation_id _software.classification _software.compiler_name _software.compiler_version _software.contact_author _software.contact_author_email _software.date _software.description _software.dependencies _software.hardware _software.language _software.location _software.mods _software.name _software.os _software.os_version _software.type _software.version _software.pdbx_ordinal ? refinement ? ? ? ? ? ? ? ? ? ? ? PHENIX ? ? ? '(phenix.refine: 1.9_1692)' 1 ? 'data reduction' ? ? ? ? ? ? ? ? ? ? ? XDS ? ? ? . 2 ? 'data scaling' ? ? ? ? ? ? ? ? ? ? ? XSCALE ? ? ? . 3 ? phasing ? ? ? ? ? ? ? ? ? ? ? SHELXDE ? ? ? . 4 # loop_ _pdbx_validate_close_contact.id _pdbx_validate_close_contact.PDB_model_num _pdbx_validate_close_contact.auth_atom_id_1 _pdbx_validate_close_contact.auth_asym_id_1 _pdbx_validate_close_contact.auth_comp_id_1 _pdbx_validate_close_contact.auth_seq_id_1 _pdbx_validate_close_contact.PDB_ins_code_1 _pdbx_validate_close_contact.label_alt_id_1 _pdbx_validate_close_contact.auth_atom_id_2 _pdbx_validate_close_contact.auth_asym_id_2 _pdbx_validate_close_contact.auth_comp_id_2 _pdbx_validate_close_contact.auth_seq_id_2 _pdbx_validate_close_contact.PDB_ins_code_2 _pdbx_validate_close_contact.label_alt_id_2 _pdbx_validate_close_contact.dist 1 1 NE2 A HIS 238 ? ? O2 A SO4 301 ? ? 1.79 2 1 NE2 C HIS 238 ? ? O2 A SO4 301 ? ? 1.93 3 1 OD1 A ASP 162 ? ? OG1 A THR 165 ? ? 2.02 # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A VAL 161 ? A VAL 1 2 1 Y 1 B VAL 161 ? B VAL 1 3 1 Y 1 B ASP 162 ? B ASP 2 4 1 Y 1 B GLN 163 ? B GLN 3 5 1 Y 1 C VAL 161 ? C VAL 1 6 1 Y 1 C ASP 162 ? C ASP 2 7 1 Y 1 C GLN 163 ? C GLN 3 8 1 Y 1 C LEU 164 ? C LEU 4 9 1 Y 1 C THR 165 ? C THR 5 10 1 Y 1 C ASN 166 ? C ASN 6 11 1 Y 1 C ASP 167 ? C ASP 7 12 1 Y 1 C LYS 168 ? C LYS 8 13 1 Y 1 C ALA 169 ? C ALA 9 14 1 Y 1 C ARG 170 ? C ARG 10 15 1 Y 1 C VAL 171 ? C VAL 11 16 1 Y 1 C GLU 172 ? C GLU 12 17 1 Y 1 C VAL 173 ? C VAL 13 18 1 Y 1 C GLU 174 ? C GLU 14 19 1 Y 1 C ARG 175 ? C ARG 15 # _pdbx_audit_support.funding_organization KULeuven _pdbx_audit_support.country Belgium _pdbx_audit_support.grant_number 07/071 _pdbx_audit_support.ordinal 1 # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 'SULFATE ION' SO4 3 'CHLORIDE ION' CL 4 water HOH #