HEADER TOXIN 19-MAR-15 4YV5 TITLE CRYSTAL STRUCTURE OF MYOTOXIN II FROM BOTHROPS MOOJENI COMPLEXED TO TITLE 2 SURAMIN COMPND MOL_ID: 1; COMPND 2 MOLECULE: BASIC PHOSPHOLIPASE A2 HOMOLOG 2; COMPND 3 CHAIN: B, A; COMPND 4 SYNONYM: SVPLA2 HOMOLOG,M-VI,MJTX-II,MYOTOXIN II SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: BOTHROPS MOOJENI; SOURCE 3 ORGANISM_COMMON: LANCE-HEADED VIPER; SOURCE 4 ORGANISM_TAXID: 98334 KEYWDS BOTHROPS MOOJENI, MYOTOXIN II, LYS49-PLA2, SURAMIN, TOXIN EXPDTA X-RAY DIFFRACTION AUTHOR G.H.M.SALVADOR,M.R.M.FONTES REVDAT 4 27-SEP-23 4YV5 1 COMPND HETNAM REVDAT 3 18-APR-18 4YV5 1 JRNL REVDAT 2 22-NOV-17 4YV5 1 REMARK REVDAT 1 14-OCT-15 4YV5 0 JRNL AUTH G.H.SALVADOR,T.R.DREYER,W.L.CAVALCANTE,F.F.MATIOLI, JRNL AUTH 2 J.I.DOS SANTOS,A.VELAZQUEZ-CAMPOY,M.GALLACCI,M.R.FONTES JRNL TITL STRUCTURAL AND FUNCTIONAL EVIDENCE FOR MEMBRANE DOCKING AND JRNL TITL 2 DISRUPTION SITES ON PHOSPHOLIPASE A2-LIKE PROTEINS REVEALED JRNL TITL 3 BY COMPLEXATION WITH THE INHIBITOR SURAMIN. JRNL REF ACTA CRYSTALLOGR. D BIOL. V. 71 2066 2015 JRNL REF 2 CRYSTALLOGR. JRNL REFN ESSN 1399-0047 JRNL PMID 26457430 JRNL DOI 10.1107/S1399004715014443 REMARK 2 REMARK 2 RESOLUTION. 1.90 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.90 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 31.82 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 3 NUMBER OF REFLECTIONS : 23027 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.196 REMARK 3 R VALUE (WORKING SET) : 0.195 REMARK 3 FREE R VALUE : 0.227 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1152 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 31.8274 - 3.7981 0.99 2883 152 0.1745 0.1839 REMARK 3 2 3.7981 - 3.0154 1.00 2753 145 0.1860 0.2371 REMARK 3 3 3.0154 - 2.6345 1.00 2746 145 0.2097 0.2188 REMARK 3 4 2.6345 - 2.3937 1.00 2710 143 0.1993 0.2595 REMARK 3 5 2.3937 - 2.2222 1.00 2710 143 0.1983 0.2436 REMARK 3 6 2.2222 - 2.0912 1.00 2696 142 0.2017 0.2321 REMARK 3 7 2.0912 - 1.9865 1.00 2682 140 0.2176 0.2588 REMARK 3 8 1.9865 - 1.9000 1.00 2695 142 0.2417 0.3049 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.220 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 21.080 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 20.52 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 26.19 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.005 2235 REMARK 3 ANGLE : 1.135 3001 REMARK 3 CHIRALITY : 0.037 268 REMARK 3 PLANARITY : 0.004 357 REMARK 3 DIHEDRAL : 18.067 834 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 17 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 1 THROUGH 13 ) REMARK 3 ORIGIN FOR THE GROUP (A): -14.0849 7.1845 22.9330 REMARK 3 T TENSOR REMARK 3 T11: 0.0909 T22: 0.1375 REMARK 3 T33: 0.0921 T12: 0.0018 REMARK 3 T13: 0.0104 T23: -0.0004 REMARK 3 L TENSOR REMARK 3 L11: 0.0117 L22: 0.1358 REMARK 3 L33: 0.0615 L12: -0.0103 REMARK 3 L13: 0.0465 L23: 0.0005 REMARK 3 S TENSOR REMARK 3 S11: -0.0982 S12: 0.0314 S13: -0.0330 REMARK 3 S21: -0.0156 S22: 0.1180 S23: -0.0564 REMARK 3 S31: -0.0648 S32: -0.0849 S33: -0.0038 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 15 THROUGH 27 ) REMARK 3 ORIGIN FOR THE GROUP (A): -18.3949 -3.4483 19.9882 REMARK 3 T TENSOR REMARK 3 T11: 0.1086 T22: 0.1615 REMARK 3 T33: 0.1414 T12: -0.0246 REMARK 3 T13: 0.0029 T23: 0.0250 REMARK 3 L TENSOR REMARK 3 L11: 0.0200 L22: 0.0493 REMARK 3 L33: 0.0670 L12: 0.0153 REMARK 3 L13: 0.0361 L23: 0.0286 REMARK 3 S TENSOR REMARK 3 S11: -0.0914 S12: -0.0492 S13: -0.2166 REMARK 3 S21: 0.0335 S22: 0.1660 S23: 0.2253 REMARK 3 S31: 0.1704 S32: -0.0647 S33: 0.0266 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 28 THROUGH 39 ) REMARK 3 ORIGIN FOR THE GROUP (A): -10.2160 -11.3092 23.6652 REMARK 3 T TENSOR REMARK 3 T11: 0.1682 T22: 0.1695 REMARK 3 T33: 0.1949 T12: 0.0261 REMARK 3 T13: 0.0104 T23: 0.0232 REMARK 3 L TENSOR REMARK 3 L11: 0.0688 L22: 0.0855 REMARK 3 L33: 0.0739 L12: 0.1043 REMARK 3 L13: 0.0285 L23: -0.0231 REMARK 3 S TENSOR REMARK 3 S11: 0.0315 S12: -0.0188 S13: -0.0966 REMARK 3 S21: -0.1614 S22: 0.0035 S23: -0.0284 REMARK 3 S31: -0.0407 S32: -0.0038 S33: 0.0000 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 40 THROUGH 57 ) REMARK 3 ORIGIN FOR THE GROUP (A): -5.0084 -5.1896 24.4743 REMARK 3 T TENSOR REMARK 3 T11: 0.1502 T22: 0.0953 REMARK 3 T33: 0.1403 T12: 0.0452 REMARK 3 T13: -0.0710 T23: 0.0518 REMARK 3 L TENSOR REMARK 3 L11: 0.3844 L22: 0.1375 REMARK 3 L33: 0.0846 L12: 0.1519 REMARK 3 L13: -0.1292 L23: -0.0946 REMARK 3 S TENSOR REMARK 3 S11: -0.4380 S12: 0.0047 S13: -0.2338 REMARK 3 S21: 0.0622 S22: 0.1412 S23: -0.3977 REMARK 3 S31: 0.0781 S32: -0.0535 S33: -0.1332 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 58 THROUGH 74 ) REMARK 3 ORIGIN FOR THE GROUP (A): -7.9006 6.2601 34.9511 REMARK 3 T TENSOR REMARK 3 T11: 0.3585 T22: 0.2680 REMARK 3 T33: 0.2213 T12: 0.0448 REMARK 3 T13: -0.1025 T23: 0.0355 REMARK 3 L TENSOR REMARK 3 L11: 0.0781 L22: 0.1155 REMARK 3 L33: 0.1176 L12: -0.0060 REMARK 3 L13: 0.0155 L23: 0.0186 REMARK 3 S TENSOR REMARK 3 S11: -0.1164 S12: -0.4434 S13: -0.0908 REMARK 3 S21: 0.2094 S22: 0.2676 S23: 0.1127 REMARK 3 S31: 0.1658 S32: -0.0711 S33: -0.0275 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 75 THROUGH 88 ) REMARK 3 ORIGIN FOR THE GROUP (A): -6.3177 15.0494 21.9361 REMARK 3 T TENSOR REMARK 3 T11: 0.1609 T22: 0.1479 REMARK 3 T33: 0.1217 T12: -0.0026 REMARK 3 T13: -0.0372 T23: -0.0245 REMARK 3 L TENSOR REMARK 3 L11: 0.0549 L22: 0.1159 REMARK 3 L33: 0.0410 L12: 0.0286 REMARK 3 L13: -0.0653 L23: -0.0500 REMARK 3 S TENSOR REMARK 3 S11: -0.1325 S12: -0.1261 S13: 0.0245 REMARK 3 S21: 0.1772 S22: 0.0497 S23: -0.2289 REMARK 3 S31: -0.1298 S32: -0.0930 S33: -0.0007 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 89 THROUGH 117 ) REMARK 3 ORIGIN FOR THE GROUP (A): -8.5287 0.3700 19.4388 REMARK 3 T TENSOR REMARK 3 T11: 0.1398 T22: 0.1360 REMARK 3 T33: 0.1288 T12: -0.0061 REMARK 3 T13: -0.0046 T23: 0.0238 REMARK 3 L TENSOR REMARK 3 L11: 0.6218 L22: 0.7610 REMARK 3 L33: 0.6685 L12: -0.5294 REMARK 3 L13: -0.2515 L23: -0.2756 REMARK 3 S TENSOR REMARK 3 S11: -0.0141 S12: -0.0895 S13: -0.1011 REMARK 3 S21: -0.0616 S22: 0.0801 S23: -0.2979 REMARK 3 S31: 0.0057 S32: -0.0852 S33: -0.0269 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 118 THROUGH 126 ) REMARK 3 ORIGIN FOR THE GROUP (A): -19.5608 -13.7128 24.4359 REMARK 3 T TENSOR REMARK 3 T11: 0.3022 T22: 0.2351 REMARK 3 T33: 0.2819 T12: 0.0019 REMARK 3 T13: 0.0123 T23: 0.0617 REMARK 3 L TENSOR REMARK 3 L11: 0.0423 L22: 0.0268 REMARK 3 L33: 0.0037 L12: 0.0504 REMARK 3 L13: -0.0087 L23: -0.0281 REMARK 3 S TENSOR REMARK 3 S11: -0.1730 S12: 0.2184 S13: -0.1872 REMARK 3 S21: 0.1864 S22: 0.0864 S23: 0.2946 REMARK 3 S31: 0.0088 S32: -0.2795 S33: 0.0089 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 127 THROUGH 133 ) REMARK 3 ORIGIN FOR THE GROUP (A): -3.3833 -15.7348 27.2866 REMARK 3 T TENSOR REMARK 3 T11: 0.1776 T22: 0.1989 REMARK 3 T33: 0.3494 T12: 0.0009 REMARK 3 T13: 0.0592 T23: 0.0183 REMARK 3 L TENSOR REMARK 3 L11: 0.1253 L22: 0.0320 REMARK 3 L33: 0.0590 L12: -0.0394 REMARK 3 L13: 0.0243 L23: -0.0263 REMARK 3 S TENSOR REMARK 3 S11: -0.2205 S12: -0.2291 S13: 0.3304 REMARK 3 S21: 0.1595 S22: 0.0808 S23: -0.0259 REMARK 3 S31: -0.1188 S32: 0.0648 S33: 0.0025 REMARK 3 TLS GROUP : 10 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 1 THROUGH 13 ) REMARK 3 ORIGIN FOR THE GROUP (A): -28.2261 -14.1561 33.1523 REMARK 3 T TENSOR REMARK 3 T11: 0.1143 T22: 0.1904 REMARK 3 T33: 0.1284 T12: -0.0138 REMARK 3 T13: 0.0202 T23: 0.0208 REMARK 3 L TENSOR REMARK 3 L11: 0.0436 L22: 0.0776 REMARK 3 L33: 0.1089 L12: 0.0753 REMARK 3 L13: -0.0338 L23: 0.0424 REMARK 3 S TENSOR REMARK 3 S11: -0.0359 S12: 0.2141 S13: 0.0031 REMARK 3 S21: -0.0562 S22: 0.0084 S23: 0.0381 REMARK 3 S31: 0.0941 S32: 0.2126 S33: -0.0160 REMARK 3 TLS GROUP : 11 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 15 THROUGH 22 ) REMARK 3 ORIGIN FOR THE GROUP (A): -30.4235 -6.9672 26.3664 REMARK 3 T TENSOR REMARK 3 T11: 0.1708 T22: 0.1957 REMARK 3 T33: 0.1358 T12: -0.0208 REMARK 3 T13: 0.0091 T23: 0.0164 REMARK 3 L TENSOR REMARK 3 L11: 0.0157 L22: 0.0264 REMARK 3 L33: 0.0748 L12: -0.0217 REMARK 3 L13: -0.0137 L23: -0.0280 REMARK 3 S TENSOR REMARK 3 S11: -0.0861 S12: 0.3483 S13: -0.0344 REMARK 3 S21: -0.2865 S22: 0.0936 S23: 0.0639 REMARK 3 S31: -0.0167 S32: -0.1947 S33: 0.0019 REMARK 3 TLS GROUP : 12 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 23 THROUGH 39 ) REMARK 3 ORIGIN FOR THE GROUP (A): -28.8938 3.8164 35.3157 REMARK 3 T TENSOR REMARK 3 T11: 0.2197 T22: 0.1417 REMARK 3 T33: 0.2433 T12: -0.0083 REMARK 3 T13: -0.0124 T23: 0.0044 REMARK 3 L TENSOR REMARK 3 L11: 0.0087 L22: 0.0268 REMARK 3 L33: 0.0425 L12: 0.0171 REMARK 3 L13: -0.0325 L23: -0.0058 REMARK 3 S TENSOR REMARK 3 S11: -0.0979 S12: 0.0990 S13: 0.4159 REMARK 3 S21: 0.1217 S22: 0.0356 S23: 0.1944 REMARK 3 S31: -0.3066 S32: -0.0050 S33: -0.0000 REMARK 3 TLS GROUP : 13 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 40 THROUGH 57 ) REMARK 3 ORIGIN FOR THE GROUP (A): -29.5559 -1.7464 42.1341 REMARK 3 T TENSOR REMARK 3 T11: 0.2349 T22: 0.1498 REMARK 3 T33: 0.1774 T12: -0.0144 REMARK 3 T13: -0.0130 T23: -0.0201 REMARK 3 L TENSOR REMARK 3 L11: 0.0678 L22: 0.1096 REMARK 3 L33: 0.1339 L12: -0.0181 REMARK 3 L13: -0.0309 L23: -0.0235 REMARK 3 S TENSOR REMARK 3 S11: 0.0443 S12: 0.0176 S13: 0.0103 REMARK 3 S21: 0.4520 S22: -0.0032 S23: 0.1266 REMARK 3 S31: -0.0336 S32: -0.0407 S33: 0.0119 REMARK 3 TLS GROUP : 14 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 58 THROUGH 88 ) REMARK 3 ORIGIN FOR THE GROUP (A): -25.9685 -18.1971 41.3967 REMARK 3 T TENSOR REMARK 3 T11: 0.1689 T22: 0.1543 REMARK 3 T33: 0.1659 T12: -0.0148 REMARK 3 T13: -0.0354 T23: 0.0135 REMARK 3 L TENSOR REMARK 3 L11: 0.1823 L22: 0.1153 REMARK 3 L33: 0.3800 L12: -0.0804 REMARK 3 L13: 0.1328 L23: 0.0808 REMARK 3 S TENSOR REMARK 3 S11: 0.0024 S12: -0.0016 S13: -0.0879 REMARK 3 S21: 0.1802 S22: 0.0329 S23: -0.0918 REMARK 3 S31: -0.0338 S32: 0.0313 S33: 0.0262 REMARK 3 TLS GROUP : 15 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 89 THROUGH 112 ) REMARK 3 ORIGIN FOR THE GROUP (A): -32.7779 -10.4296 40.2934 REMARK 3 T TENSOR REMARK 3 T11: 0.1415 T22: 0.1379 REMARK 3 T33: 0.1233 T12: -0.0054 REMARK 3 T13: 0.0066 T23: -0.0176 REMARK 3 L TENSOR REMARK 3 L11: 0.3082 L22: 0.3636 REMARK 3 L33: 0.2743 L12: 0.1839 REMARK 3 L13: -0.2370 L23: -0.2068 REMARK 3 S TENSOR REMARK 3 S11: -0.1582 S12: -0.0859 S13: 0.0158 REMARK 3 S21: 0.2981 S22: 0.0965 S23: 0.0527 REMARK 3 S31: -0.2239 S32: -0.1451 S33: 0.0496 REMARK 3 TLS GROUP : 16 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 113 THROUGH 117 ) REMARK 3 ORIGIN FOR THE GROUP (A): -35.7416 3.4180 26.4241 REMARK 3 T TENSOR REMARK 3 T11: 0.1978 T22: 0.2163 REMARK 3 T33: 0.2734 T12: 0.0140 REMARK 3 T13: -0.0287 T23: 0.0765 REMARK 3 L TENSOR REMARK 3 L11: 0.0085 L22: 0.0302 REMARK 3 L33: 0.0117 L12: 0.0137 REMARK 3 L13: -0.0032 L23: -0.0286 REMARK 3 S TENSOR REMARK 3 S11: -0.0522 S12: 0.5366 S13: 0.3373 REMARK 3 S21: -0.1205 S22: 0.2434 S23: 0.1399 REMARK 3 S31: -0.4831 S32: -0.4059 S33: -0.0001 REMARK 3 TLS GROUP : 17 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 118 THROUGH 133 ) REMARK 3 ORIGIN FOR THE GROUP (A): -26.2336 7.8930 34.8821 REMARK 3 T TENSOR REMARK 3 T11: 0.2898 T22: 0.1990 REMARK 3 T33: 0.2470 T12: -0.0395 REMARK 3 T13: 0.0012 T23: -0.0111 REMARK 3 L TENSOR REMARK 3 L11: 0.0428 L22: 0.4533 REMARK 3 L33: 0.2827 L12: -0.0028 REMARK 3 L13: 0.0712 L23: -0.2175 REMARK 3 S TENSOR REMARK 3 S11: 0.1762 S12: 0.1434 S13: 0.0583 REMARK 3 S21: 0.4877 S22: 0.1734 S23: -0.2558 REMARK 3 S31: 0.1202 S32: -0.2064 S33: 0.0078 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4YV5 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 01-APR-15. REMARK 100 THE DEPOSITION ID IS D_1000208147. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 02-APR-14 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : LNLS REMARK 200 BEAMLINE : W01B-MX2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.425 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 225 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : NULL REMARK 200 DATA SCALING SOFTWARE : HKL-2000, SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 23072 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.900 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 200 DATA REDUNDANCY : 4.700 REMARK 200 R MERGE (I) : 0.12700 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 5.9000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.90 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.97 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.9 REMARK 200 DATA REDUNDANCY IN SHELL : 4.90 REMARK 200 R MERGE FOR SHELL (I) : 0.70000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER 2.5.3 REMARK 200 STARTING MODEL: 4KF3 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 51.73 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.55 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 30% (W/V) PEG 4000, 0.1 M TRIS HCL PH REMARK 280 8.5 AND 0.2 M LITHIUM SULFATE, VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 291K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 25.39750 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 43.86050 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 31.82300 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 43.86050 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 25.39750 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 31.82300 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 7100 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 13080 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -160.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: B, A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS B 128 CG CD CE NZ REMARK 470 LYS A 69 CG CD CE NZ REMARK 470 GLU A 86 CG CD OE1 OE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN B 17 109.91 -51.38 REMARK 500 GLU B 86 -109.22 -6.53 REMARK 500 ASN B 87 140.25 63.67 REMARK 500 ASN B 88 -176.92 -68.32 REMARK 500 TYR B 119 78.47 -110.76 REMARK 500 ASP A 39 -169.56 -165.18 REMARK 500 ASN A 87 -127.59 49.76 REMARK 500 TYR A 119 78.72 -115.35 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH B 389 DISTANCE = 5.82 ANGSTROMS REMARK 525 HOH B 390 DISTANCE = 6.22 ANGSTROMS REMARK 525 HOH A 407 DISTANCE = 6.10 ANGSTROMS REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 B 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 B 202 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PE4 B 203 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue 1PE B 204 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 B 205 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 B 206 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SVR B 207 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 202 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue 1PE A 203 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 204 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SVR A 205 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4KF3 RELATED DB: PDB REMARK 900 SAME PROTEIN IN NATIVE FORM. DBREF 4YV5 B 1 133 UNP Q9I834 PA2H2_BOTMO 1 122 DBREF 4YV5 A 1 133 UNP Q9I834 PA2H2_BOTMO 1 122 SEQRES 1 B 122 SER LEU PHE GLU LEU GLY LYS MET ILE LEU GLN GLU THR SEQRES 2 B 122 GLY LYS ASN PRO ALA LYS SER TYR GLY VAL TYR GLY CYS SEQRES 3 B 122 ASN CYS GLY VAL GLY GLY ARG GLY LYS PRO LYS ASP ALA SEQRES 4 B 122 THR ASP ARG CYS CYS TYR VAL HIS LYS CYS CYS TYR LYS SEQRES 5 B 122 LYS LEU THR GLY CYS ASP PRO LYS LYS ASP ARG TYR SER SEQRES 6 B 122 TYR SER TRP LYS ASP LYS THR ILE VAL CYS GLY GLU ASN SEQRES 7 B 122 ASN SER CYS LEU LYS GLU LEU CYS GLU CYS ASP LYS ALA SEQRES 8 B 122 VAL ALA ILE CYS LEU ARG GLU ASN LEU ASP THR TYR ASN SEQRES 9 B 122 LYS LYS TYR ARG TYR ASN TYR LEU LYS PRO PHE CYS LYS SEQRES 10 B 122 LYS ALA ASP PRO CYS SEQRES 1 A 122 SER LEU PHE GLU LEU GLY LYS MET ILE LEU GLN GLU THR SEQRES 2 A 122 GLY LYS ASN PRO ALA LYS SER TYR GLY VAL TYR GLY CYS SEQRES 3 A 122 ASN CYS GLY VAL GLY GLY ARG GLY LYS PRO LYS ASP ALA SEQRES 4 A 122 THR ASP ARG CYS CYS TYR VAL HIS LYS CYS CYS TYR LYS SEQRES 5 A 122 LYS LEU THR GLY CYS ASP PRO LYS LYS ASP ARG TYR SER SEQRES 6 A 122 TYR SER TRP LYS ASP LYS THR ILE VAL CYS GLY GLU ASN SEQRES 7 A 122 ASN SER CYS LEU LYS GLU LEU CYS GLU CYS ASP LYS ALA SEQRES 8 A 122 VAL ALA ILE CYS LEU ARG GLU ASN LEU ASP THR TYR ASN SEQRES 9 A 122 LYS LYS TYR ARG TYR ASN TYR LEU LYS PRO PHE CYS LYS SEQRES 10 A 122 LYS ALA ASP PRO CYS HET SO4 B 201 5 HET SO4 B 202 5 HET PE4 B 203 24 HET 1PE B 204 16 HET SO4 B 205 5 HET SO4 B 206 5 HET SVR B 207 86 HET SO4 A 201 5 HET SO4 A 202 5 HET 1PE A 203 16 HET SO4 A 204 5 HET SVR A 205 86 HETNAM SO4 SULFATE ION HETNAM PE4 2-{2-[2-(2-{2-[2-(2-ETHOXY-ETHOXY)-ETHOXY]-ETHOXY}- HETNAM 2 PE4 ETHOXY)-ETHOXY]-ETHOXY}-ETHANOL HETNAM 1PE PENTAETHYLENE GLYCOL HETNAM SVR 8,8'-[CARBONYLBIS[IMINO-3,1-PHENYLENECARBONYLIMINO(4- HETNAM 2 SVR METHYL-3,1-PHENYLENE)CARBONYLIMINO]]BIS-1,3,5- HETNAM 3 SVR NAPHTHALENETRISULFON IC ACID HETSYN PE4 POLYETHYLENE GLYCOL PEG4000 HETSYN 1PE PEG400 HETSYN SVR SURAMIN FORMUL 3 SO4 7(O4 S 2-) FORMUL 5 PE4 C16 H34 O8 FORMUL 6 1PE 2(C10 H22 O6) FORMUL 9 SVR 2(C51 H40 N6 O23 S6) FORMUL 15 HOH *197(H2 O) HELIX 1 AA1 SER B 1 GLY B 15 1 14 HELIX 2 AA2 ASN B 17 GLY B 23 1 7 HELIX 3 AA3 ASP B 39 LYS B 57 1 16 HELIX 4 AA4 ASN B 88 ASN B 109 1 21 HELIX 5 AA5 LEU B 110 TYR B 113 5 4 HELIX 6 AA6 ASN B 114 ARG B 118 5 5 HELIX 7 AA7 LEU B 122 CYS B 127 5 5 HELIX 8 AA8 LEU A 2 GLY A 15 1 13 HELIX 9 AA9 ASN A 17 GLY A 23 1 7 HELIX 10 AB1 ASP A 39 LEU A 58 1 17 HELIX 11 AB2 ASN A 88 ASN A 109 1 21 HELIX 12 AB3 LEU A 110 TYR A 113 5 4 HELIX 13 AB4 ASN A 114 ARG A 118 5 5 HELIX 14 AB5 LEU A 122 CYS A 127 5 5 SHEET 1 AA1 2 TYR B 75 LYS B 78 0 SHEET 2 AA1 2 THR B 81 CYS B 84 -1 O VAL B 83 N SER B 76 SHEET 1 AA2 2 TYR A 75 LYS A 78 0 SHEET 2 AA2 2 THR A 81 CYS A 84 -1 O VAL A 83 N SER A 76 SSBOND 1 CYS B 27 CYS B 127 1555 1555 2.04 SSBOND 2 CYS B 29 CYS B 45 1555 1555 2.04 SSBOND 3 CYS B 44 CYS B 105 1555 1555 2.04 SSBOND 4 CYS B 50 CYS B 133 1555 1555 2.04 SSBOND 5 CYS B 51 CYS B 98 1555 1555 2.03 SSBOND 6 CYS B 61 CYS B 90 1555 1555 2.04 SSBOND 7 CYS B 84 CYS B 96 1555 1555 2.03 SSBOND 8 CYS A 27 CYS A 127 1555 1555 2.04 SSBOND 9 CYS A 29 CYS A 45 1555 1555 2.05 SSBOND 10 CYS A 44 CYS A 105 1555 1555 2.04 SSBOND 11 CYS A 50 CYS A 133 1555 1555 2.04 SSBOND 12 CYS A 51 CYS A 98 1555 1555 2.03 SSBOND 13 CYS A 61 CYS A 90 1555 1555 2.03 SSBOND 14 CYS A 84 CYS A 96 1555 1555 2.04 SITE 1 AC1 4 LYS B 20 LYS B 115 ARG B 118 SO4 B 202 SITE 1 AC2 6 LYS B 16 ASN B 17 LYS B 20 SO4 B 201 SITE 2 AC2 6 HOH B 301 HOH B 351 SITE 1 AC3 12 LYS A 7 LEU A 10 GLN A 11 GLY A 15 SITE 2 AC3 12 TYR A 75 TRP A 77 LYS B 7 LEU B 10 SITE 3 AC3 12 GLN B 11 GLY B 15 TYR B 75 TRP B 77 SITE 1 AC4 8 TYR A 121 LYS A 123 PRO A 125 LEU B 2 SITE 2 AC4 8 ILE B 9 CYS B 29 GLY B 30 HIS B 48 SITE 1 AC5 4 GLY B 33 ARG B 34 LYS B 53 HOH B 302 SITE 1 AC6 5 LYS A 38 LYS A 116 TYR A 117 LYS B 116 SITE 2 AC6 5 TYR B 117 SITE 1 AC7 30 PHE A 3 LYS A 7 LEU A 10 ASN A 17 SITE 2 AC7 30 PRO A 18 CYS A 27 LYS A 38 ARG A 72 SITE 3 AC7 30 PHE A 126 CYS A 127 LYS A 128 SO4 A 202 SITE 4 AC7 30 SVR A 205 HOH A 380 ASN B 114 LYS B 115 SITE 5 AC7 30 LYS B 116 TYR B 119 TYR B 121 LEU B 122 SITE 6 AC7 30 PHE B 126 HOH B 305 HOH B 311 HOH B 316 SITE 7 AC7 30 HOH B 320 HOH B 338 HOH B 347 HOH B 352 SITE 8 AC7 30 HOH B 356 HOH B 361 SITE 1 AC8 4 LYS A 16 LYS A 20 LYS A 115 ARG A 118 SITE 1 AC9 5 LYS A 16 ASN A 17 LYS A 20 HOH A 301 SITE 2 AC9 5 SVR B 207 SITE 1 AD1 8 ILE A 9 PRO A 18 TYR A 22 ASN A 28 SITE 2 AD1 8 GLY A 30 CYS A 45 HIS A 48 LYS A 49 SITE 1 AD2 3 ARG A 34 LYS A 53 HOH A 372 SITE 1 AD3 33 ASN A 114 LYS A 115 LYS A 116 TYR A 119 SITE 2 AD3 33 TYR A 121 LEU A 122 PHE A 126 HOH A 305 SITE 3 AD3 33 HOH A 316 HOH A 321 HOH A 348 HOH A 353 SITE 4 AD3 33 HOH A 355 HOH A 357 HOH A 363 HOH A 368 SITE 5 AD3 33 HOH A 369 PHE B 3 GLY B 6 LYS B 7 SITE 6 AD3 33 LEU B 10 ASN B 17 PRO B 18 CYS B 27 SITE 7 AD3 33 LYS B 36 LYS B 38 ARG B 72 PHE B 126 SITE 8 AD3 33 CYS B 127 LYS B 128 SVR B 207 HOH B 323 SITE 9 AD3 33 HOH B 351 CRYST1 50.795 63.646 87.721 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.019687 0.000000 0.000000 0.00000 SCALE2 0.000000 0.015712 0.000000 0.00000 SCALE3 0.000000 0.000000 0.011400 0.00000