HEADER SOLUTE-BINDING PROTEIN 19-MAR-15 4YV7 TITLE CRYSTAL STRUCTURE OF AN ABC TRANSPORTER SOLUTE BINDING PROTEIN TITLE 2 (IPR025997) FROM MYCOBACTERIUM SMEGMATIS (MSMEI_3018, TARGET EFI- TITLE 3 511327) WITH BOUND GLYCEROL COMPND MOL_ID: 1; COMPND 2 MOLECULE: PERIPLASMIC BINDING PROTEIN/LACI TRANSCRIPTIONAL REGULATOR; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: SUGAR ABC TRANSPORTER SUBSTRATE-BINDING PROTEIN; COMPND 5 EC: 3.6.3.17; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MYCOBACTERIUM SMEGMATIS; SOURCE 3 ORGANISM_TAXID: 246196; SOURCE 4 STRAIN: ATCC 700084 / MC(2)155; SOURCE 5 GENE: MSMEI_3018, LJ00_15400; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET KEYWDS ABC TRANSPORTER SOLUTE BINDING PROTEIN, ENZYME FUNCTION INITIATIVE, KEYWDS 2 EFI, STRUCTURAL GENOMICS, SOLUTE-BINDING PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR M.W.VETTING,Y.PATSKOVSKY,N.F.AL OBAIDI,R.TORO,L.L.MORISCO,J.BENACH, AUTHOR 2 J.KOSS,S.R.WASSERMAN,J.D.ATTONITO,A.SCOTT GLENN,S.CHAMALA, AUTHOR 3 S.CHOWDHURY,J.LAFLEUR,J.LOVE,R.D.SEIDEL,K.L.WHALEN,J.A.GERLT, AUTHOR 4 S.C.ALMO,ENZYME FUNCTION INITIATIVE (EFI) REVDAT 5 15-NOV-23 4YV7 1 REMARK REVDAT 4 27-SEP-23 4YV7 1 REMARK REVDAT 3 25-DEC-19 4YV7 1 REMARK REVDAT 2 27-SEP-17 4YV7 1 SOURCE KEYWDS REMARK REVDAT 1 01-APR-15 4YV7 0 JRNL AUTH M.W.VETTING,Y.PATSKOVSKY,N.F.AL OBAIDI,R.TORO,L.L.MORISCO, JRNL AUTH 2 J.BENACH,J.KOSS,S.R.WASSERMAN,J.D.ATTONITO,A.SCOTT GLENN, JRNL AUTH 3 S.CHAMALA,S.CHOWDHURY,J.LAFLEUR,J.LOVE,R.D.SEIDEL, JRNL AUTH 4 K.L.WHALEN,J.A.GERLT,S.C.ALMO, JRNL AUTH 5 ENZYME FUNCTION INITIATIVE (EFI) JRNL TITL CRYSTAL STRUCTURE OF AN ABC TRANSPORTER SOLUTE BINDING JRNL TITL 2 PROTEIN (IPR025997) FROM MYCOBACTERIUM SMEGMATIS JRNL TITL 3 (MSMEI_3018, TARGET EFI-511327) WITH BOUND GLYCEROL JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 2.30 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE: 1.9_1692) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.30 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 24.34 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 89.6 REMARK 3 NUMBER OF REFLECTIONS : 16403 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.180 REMARK 3 R VALUE (WORKING SET) : 0.177 REMARK 3 FREE R VALUE : 0.238 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.960 REMARK 3 FREE R VALUE TEST SET COUNT : 813 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 24.3382 - 4.1738 0.95 2930 152 0.1389 0.1664 REMARK 3 2 4.1738 - 3.3156 0.95 2759 139 0.1709 0.2287 REMARK 3 3 3.3156 - 2.8972 0.92 2689 130 0.2054 0.3369 REMARK 3 4 2.8972 - 2.6327 0.86 2453 136 0.2210 0.2868 REMARK 3 5 2.6327 - 2.4442 0.85 2418 145 0.2129 0.2951 REMARK 3 6 2.4442 - 2.3002 0.82 2341 111 0.2041 0.2513 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.250 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 24.010 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 42.83 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.014 2129 REMARK 3 ANGLE : 1.322 2890 REMARK 3 CHIRALITY : 0.051 334 REMARK 3 PLANARITY : 0.006 395 REMARK 3 DIHEDRAL : 15.840 772 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 5 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 39 THROUGH 127 ) REMARK 3 ORIGIN FOR THE GROUP (A): 35.4167 -14.9237 -0.3201 REMARK 3 T TENSOR REMARK 3 T11: 0.1837 T22: 0.1845 REMARK 3 T33: 0.2018 T12: -0.0217 REMARK 3 T13: -0.0132 T23: 0.0016 REMARK 3 L TENSOR REMARK 3 L11: 1.0265 L22: 1.8607 REMARK 3 L33: 1.2264 L12: 0.4343 REMARK 3 L13: 0.2886 L23: 0.6119 REMARK 3 S TENSOR REMARK 3 S11: 0.0273 S12: 0.0431 S13: -0.0196 REMARK 3 S21: 0.0518 S22: -0.0073 S23: -0.1600 REMARK 3 S31: 0.1164 S32: -0.0403 S33: -0.0292 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 128 THROUGH 161 ) REMARK 3 ORIGIN FOR THE GROUP (A): 27.1868 7.1383 1.3775 REMARK 3 T TENSOR REMARK 3 T11: 0.2636 T22: 0.3217 REMARK 3 T33: 0.3084 T12: -0.0252 REMARK 3 T13: -0.0156 T23: 0.0236 REMARK 3 L TENSOR REMARK 3 L11: 0.7094 L22: 5.9276 REMARK 3 L33: 0.3789 L12: 0.8373 REMARK 3 L13: 0.0493 L23: 0.5124 REMARK 3 S TENSOR REMARK 3 S11: 0.0197 S12: -0.1263 S13: -0.0204 REMARK 3 S21: -0.0096 S22: -0.0529 S23: 0.2778 REMARK 3 S31: -0.0281 S32: -0.1553 S33: 0.0091 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 162 THROUGH 244 ) REMARK 3 ORIGIN FOR THE GROUP (A): 37.7339 14.0622 -5.1098 REMARK 3 T TENSOR REMARK 3 T11: 0.2279 T22: 0.2178 REMARK 3 T33: 0.1781 T12: 0.0140 REMARK 3 T13: -0.0033 T23: -0.0021 REMARK 3 L TENSOR REMARK 3 L11: 1.3938 L22: 1.4622 REMARK 3 L33: 0.6974 L12: -0.1667 REMARK 3 L13: -0.2092 L23: -0.0041 REMARK 3 S TENSOR REMARK 3 S11: 0.0647 S12: 0.0238 S13: 0.0546 REMARK 3 S21: -0.2256 S22: -0.0605 S23: -0.0531 REMARK 3 S31: -0.0442 S32: 0.0442 S33: 0.0244 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 245 THROUGH 277 ) REMARK 3 ORIGIN FOR THE GROUP (A): 40.5528 14.1256 7.9756 REMARK 3 T TENSOR REMARK 3 T11: 0.2196 T22: 0.2335 REMARK 3 T33: 0.2063 T12: 0.0268 REMARK 3 T13: -0.0149 T23: -0.0198 REMARK 3 L TENSOR REMARK 3 L11: 2.4714 L22: 3.1522 REMARK 3 L33: 2.5121 L12: 0.8151 REMARK 3 L13: -0.3409 L23: -0.2963 REMARK 3 S TENSOR REMARK 3 S11: -0.0050 S12: -0.3476 S13: 0.1078 REMARK 3 S21: 0.2281 S22: -0.0748 S23: -0.0754 REMARK 3 S31: -0.1086 S32: 0.1371 S33: 0.1782 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 278 THROUGH 326 ) REMARK 3 ORIGIN FOR THE GROUP (A): 30.0518 -2.8000 11.4633 REMARK 3 T TENSOR REMARK 3 T11: 0.3118 T22: 0.3332 REMARK 3 T33: 0.2669 T12: -0.0174 REMARK 3 T13: 0.0600 T23: 0.0200 REMARK 3 L TENSOR REMARK 3 L11: 0.8268 L22: 3.0911 REMARK 3 L33: 0.5821 L12: 0.9729 REMARK 3 L13: 0.3191 L23: 1.0727 REMARK 3 S TENSOR REMARK 3 S11: 0.0366 S12: -0.2456 S13: -0.0176 REMARK 3 S21: 0.3240 S22: -0.1341 S23: 0.1554 REMARK 3 S31: 0.0884 S32: -0.1506 S33: 0.0890 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4YV7 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 20-MAR-15. REMARK 100 THE DEPOSITION ID IS D_1000208151. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 11-FEB-15 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 31-ID REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9793 REMARK 200 MONOCHROMATOR : GRAPHITE REMARK 200 OPTICS : MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : RAYONIX MX225HE REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-3000 REMARK 200 DATA SCALING SOFTWARE : HKL-3000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 16739 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.300 REMARK 200 RESOLUTION RANGE LOW (A) : 100.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 90.7 REMARK 200 DATA REDUNDANCY : 3.100 REMARK 200 R MERGE (I) : 0.08000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 8.4000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.30 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.34 REMARK 200 COMPLETENESS FOR SHELL (%) : 87.5 REMARK 200 DATA REDUNDANCY IN SHELL : 3.10 REMARK 200 R MERGE FOR SHELL (I) : 0.42500 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: HKL-3000 REMARK 200 STARTING MODEL: 2IOY REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 57.85 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.92 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PROTEIN (10 MM HEPES PH 7.5, 5 MM DTT, REMARK 280 10 MM D-RIBOSE); RESERVOIR (MCSG2 G2)(0.1 M TRIS PH 8.5, 2.4 M REMARK 280 DI-AMMONIUM PHOSPHATE); CRYOPROTECTION (20% GLYCEROL, 80% REMARK 280 RESERVOIR), VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X+1/2,Y+1/2,-Z REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 49.62300 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 55.31300 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 49.62300 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 55.31300 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MSE A 1 REMARK 465 SER A 2 REMARK 465 PHE A 3 REMARK 465 ALA A 4 REMARK 465 LYS A 5 REMARK 465 ALA A 6 REMARK 465 LEU A 7 REMARK 465 SER A 8 REMARK 465 GLY A 9 REMARK 465 ILE A 10 REMARK 465 ALA A 11 REMARK 465 LEU A 12 REMARK 465 GLY A 13 REMARK 465 ALA A 14 REMARK 465 ALA A 15 REMARK 465 MSE A 16 REMARK 465 ALA A 17 REMARK 465 LEU A 18 REMARK 465 SER A 19 REMARK 465 PHE A 20 REMARK 465 THR A 21 REMARK 465 GLY A 22 REMARK 465 CYS A 23 REMARK 465 SER A 24 REMARK 465 VAL A 25 REMARK 465 PRO A 26 REMARK 465 GLY A 27 REMARK 465 ASP A 28 REMARK 465 ASP A 29 REMARK 465 ALA A 30 REMARK 465 ALA A 31 REMARK 465 GLN A 32 REMARK 465 ASN A 33 REMARK 465 ALA A 34 REMARK 465 PRO A 35 REMARK 465 VAL A 36 REMARK 465 VAL A 37 REMARK 465 ASP A 38 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLU A 326 CG CD OE1 OE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 HZ3 LYS A 164 O HOH A 502 1.32 REMARK 500 HH12 ARG A 95 O HOH A 501 1.42 REMARK 500 NH1 ARG A 95 O HOH A 501 1.80 REMARK 500 O HOH A 592 O HOH A 608 2.02 REMARK 500 O HOH A 539 O HOH A 604 2.10 REMARK 500 NZ LYS A 164 O HOH A 502 2.17 REMARK 500 OD1 ASP A 88 O HOH A 503 2.17 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ALA A 40 92.00 55.74 REMARK 500 ASP A 128 -53.33 76.24 REMARK 500 LEU A 223 131.48 -31.46 REMARK 500 ASP A 255 -42.94 142.25 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL A 401 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: EFI-511327 RELATED DB: TARGETTRACK DBREF 4YV7 A 1 326 UNP I7G195 I7G195_MYCS2 1 326 SEQRES 1 A 326 MSE SER PHE ALA LYS ALA LEU SER GLY ILE ALA LEU GLY SEQRES 2 A 326 ALA ALA MSE ALA LEU SER PHE THR GLY CYS SER VAL PRO SEQRES 3 A 326 GLY ASP ASP ALA ALA GLN ASN ALA PRO VAL VAL ASP GLY SEQRES 4 A 326 ALA LEU LYS ILE GLY PHE SER GLN ALA THR GLN GLN SER SEQRES 5 A 326 PRO PHE TYR VAL ALA LEU THR ASP ALA ALA LYS ALA GLU SEQRES 6 A 326 ALA GLN ALA GLN GLY ASP GLU LEU PHE TYR ALA ASP ALA SEQRES 7 A 326 ASN GLY ASP ILE THR LYS GLN ASN ASN ASP VAL GLN ASP SEQRES 8 A 326 LEU ILE THR ARG GLY ILE ASN VAL LEU VAL ILE ASN PRO SEQRES 9 A 326 VAL ASP PRO LYS GLY VAL THR PRO SER LEU ALA ALA ALA SEQRES 10 A 326 GLU ALA ALA GLY ILE LYS VAL VAL THR VAL ASP ARG PRO SEQRES 11 A 326 VAL GLU SER GLY ALA ALA SER PHE VAL GLY ARG ASP ASN SEQRES 12 A 326 LYS ALA MSE GLY GLU LEU VAL GLY LYS ALA ALA VAL ASP SEQRES 13 A 326 THR LEU GLY PRO ASP GLY GLY LYS ILE ILE GLU ILE GLN SEQRES 14 A 326 GLY ASP ALA GLY GLY ALA VAL ALA ARG ASP ARG ARG ASP SEQRES 15 A 326 GLY PHE GLN ALA ALA VAL SER GLY ARG PRO ASN ILE THR SEQRES 16 A 326 ILE VAL GLU GLY PRO TYR CYS ASP TYR ILE ARG SER LYS SEQRES 17 A 326 ALA VAL THR ALA MSE GLN ASP LEU LEU GLN ALA HIS PRO SEQRES 18 A 326 ASP LEU LYS GLY VAL TYR ALA GLN ASN ASP ASP MSE ALA SEQRES 19 A 326 LEU GLY ALA MSE GLN VAL LEU ALA GLU ASN ASN ARG THR SEQRES 20 A 326 ASP VAL LYS VAL PHE GLY VAL ASP GLY LEU MSE GLU ALA SEQRES 21 A 326 VAL ARG ALA ILE ALA ASP GLY ASP GLN TYR VAL ALA THR SEQRES 22 A 326 ALA LEU ASN ASP PRO ASP ALA GLU GLY ARG LEU ALA ILE SEQRES 23 A 326 GLN THR ALA ALA LYS VAL ALA ARG GLY GLU SER VAL PRO SEQRES 24 A 326 GLU PHE VAL ASP ALA GLY THR GLY LEU VAL ASP LYS SER SEQRES 25 A 326 ASN ALA SER ALA LEU VAL GLY GLN SER THR PHE ALA ALA SEQRES 26 A 326 GLU MODRES 4YV7 MSE A 146 MET MODIFIED RESIDUE MODRES 4YV7 MSE A 213 MET MODIFIED RESIDUE MODRES 4YV7 MSE A 233 MET MODIFIED RESIDUE MODRES 4YV7 MSE A 238 MET MODIFIED RESIDUE MODRES 4YV7 MSE A 258 MET MODIFIED RESIDUE HET MSE A 146 17 HET MSE A 213 17 HET MSE A 233 17 HET MSE A 238 17 HET MSE A 258 32 HET GOL A 401 6 HETNAM MSE SELENOMETHIONINE HETNAM GOL GLYCEROL HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 1 MSE 5(C5 H11 N O2 SE) FORMUL 2 GOL C3 H8 O3 FORMUL 3 HOH *110(H2 O) HELIX 1 AA1 SER A 52 GLN A 69 1 18 HELIX 2 AA2 ASP A 81 ARG A 95 1 15 HELIX 3 AA3 VAL A 110 ALA A 120 1 11 HELIX 4 AA4 ASP A 142 GLY A 159 1 18 HELIX 5 AA5 PRO A 160 GLY A 162 5 3 HELIX 6 AA6 GLY A 174 SER A 189 1 16 HELIX 7 AA7 ILE A 205 HIS A 220 1 16 HELIX 8 AA8 ASN A 230 ASN A 244 1 15 HELIX 9 AA9 LEU A 257 GLY A 267 1 11 HELIX 10 AB1 ASP A 277 ARG A 294 1 18 HELIX 11 AB2 ASP A 310 SER A 315 1 6 HELIX 12 AB3 ALA A 316 VAL A 318 5 3 SHEET 1 AA1 6 GLU A 72 ASP A 77 0 SHEET 2 AA1 6 LYS A 42 GLN A 47 1 N ILE A 43 O GLU A 72 SHEET 3 AA1 6 VAL A 99 ILE A 102 1 O VAL A 99 N GLY A 44 SHEET 4 AA1 6 LYS A 123 VAL A 127 1 O VAL A 125 N ILE A 102 SHEET 5 AA1 6 SER A 137 GLY A 140 1 O VAL A 139 N THR A 126 SHEET 6 AA1 6 PHE A 301 ASP A 303 1 O VAL A 302 N PHE A 138 SHEET 1 AA2 6 ILE A 194 TYR A 201 0 SHEET 2 AA2 6 GLY A 163 GLN A 169 1 N ILE A 165 O THR A 195 SHEET 3 AA2 6 LEU A 223 ALA A 228 1 O TYR A 227 N ILE A 166 SHEET 4 AA2 6 LYS A 250 PHE A 252 1 O PHE A 252 N ALA A 228 SHEET 5 AA2 6 TYR A 270 ALA A 274 1 O VAL A 271 N VAL A 251 SHEET 6 AA2 6 LEU A 308 VAL A 309 -1 O VAL A 309 N THR A 273 LINK C ALA A 145 N MSE A 146 1555 1555 1.32 LINK C MSE A 146 N GLY A 147 1555 1555 1.33 LINK C ALA A 212 N MSE A 213 1555 1555 1.32 LINK C MSE A 213 N GLN A 214 1555 1555 1.33 LINK C ASP A 232 N MSE A 233 1555 1555 1.32 LINK C MSE A 233 N ALA A 234 1555 1555 1.33 LINK C ALA A 237 N MSE A 238 1555 1555 1.32 LINK C MSE A 238 N GLN A 239 1555 1555 1.34 LINK C LEU A 257 N AMSE A 258 1555 1555 1.33 LINK C LEU A 257 N BMSE A 258 1555 1555 1.34 LINK C AMSE A 258 N GLU A 259 1555 1555 1.33 LINK C BMSE A 258 N GLU A 259 1555 1555 1.32 SITE 1 AC1 7 PHE A 54 ASP A 128 ARG A 180 ASN A 230 SITE 2 AC1 7 ASP A 255 ASN A 276 HOH A 514 CRYST1 99.246 110.626 35.929 90.00 90.00 90.00 P 21 21 2 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.010076 0.000000 0.000000 0.00000 SCALE2 0.000000 0.009039 0.000000 0.00000 SCALE3 0.000000 0.000000 0.027833 0.00000