HEADER TRANSFERASE 20-MAR-15 4YVH TITLE CRYSTAL STRUCTURE OF H. INFLUENZAE TRMD IN COMPLEX WITH SINEFUNGIN COMPND MOL_ID: 1; COMPND 2 MOLECULE: TRNA (GUANINE-N(1)-)-METHYLTRANSFERASE; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: M1G-METHYLTRANSFERASE,TRNA [GM37] METHYLTRANSFERASE; COMPND 5 EC: 2.1.1.228; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HAEMOPHILUS INFLUENZAE (STRAIN ATCC 51907 / DSM SOURCE 3 11121 / KW20 / RD); SOURCE 4 ORGANISM_TAXID: 71421; SOURCE 5 STRAIN: ATCC 51907 / DSM 11121 / KW20 / RD; SOURCE 6 GENE: TRMD, HI_0202; SOURCE 7 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 8 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS MTASE, SPOUT, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR K.YOSHIDA,T.ITO,S.YOKOYAMA REVDAT 5 08-NOV-23 4YVH 1 REMARK REVDAT 4 19-FEB-20 4YVH 1 JRNL REMARK REVDAT 3 19-AUG-15 4YVH 1 JRNL REVDAT 2 29-JUL-15 4YVH 1 JRNL REVDAT 1 15-JUL-15 4YVH 0 JRNL AUTH T.ITO,I.MASUDA,K.YOSHIDA,S.GOTO-ITO,S.SEKINE,S.W.SUH, JRNL AUTH 2 Y.M.HOU,S.YOKOYAMA JRNL TITL STRUCTURAL BASIS FOR METHYL-DONOR-DEPENDENT AND JRNL TITL 2 SEQUENCE-SPECIFIC BINDING TO TRNA SUBSTRATES BY KNOTTED JRNL TITL 3 METHYLTRANSFERASE TRMD. JRNL REF PROC.NATL.ACAD.SCI.USA V. 112 E4197 2015 JRNL REFN ESSN 1091-6490 JRNL PMID 26183229 JRNL DOI 10.1073/PNAS.1422981112 REMARK 2 REMARK 2 RESOLUTION. 1.60 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE: 1.7_650) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.60 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 23.24 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.330 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 3 NUMBER OF REFLECTIONS : 39805 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.188 REMARK 3 R VALUE (WORKING SET) : 0.186 REMARK 3 FREE R VALUE : 0.219 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.020 REMARK 3 FREE R VALUE TEST SET COUNT : 2000 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 23.2430 - 3.8512 0.98 2793 143 0.1714 0.1985 REMARK 3 2 3.8512 - 3.0590 1.00 2780 132 0.1656 0.1768 REMARK 3 3 3.0590 - 2.6730 1.00 2696 158 0.1987 0.2238 REMARK 3 4 2.6730 - 2.4289 1.00 2710 127 0.1822 0.2259 REMARK 3 5 2.4289 - 2.2549 1.00 2734 126 0.1769 0.2108 REMARK 3 6 2.2549 - 2.1221 1.00 2715 138 0.1699 0.2133 REMARK 3 7 2.1221 - 2.0159 1.00 2697 139 0.1842 0.2011 REMARK 3 8 2.0159 - 1.9282 1.00 2695 137 0.1884 0.2297 REMARK 3 9 1.9282 - 1.8540 1.00 2693 143 0.2034 0.2903 REMARK 3 10 1.8540 - 1.7900 0.99 2634 159 0.2340 0.2599 REMARK 3 11 1.7900 - 1.7341 1.00 2674 138 0.2365 0.2837 REMARK 3 12 1.7341 - 1.6845 1.00 2685 158 0.2310 0.2734 REMARK 3 13 1.6845 - 1.6402 1.00 2639 155 0.2565 0.3042 REMARK 3 14 1.6402 - 1.6002 1.00 2660 147 0.2560 0.2977 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.20 REMARK 3 SHRINKAGE RADIUS : 0.95 REMARK 3 K_SOL : 0.40 REMARK 3 B_SOL : 46.62 REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.220 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 20.410 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.05640 REMARK 3 B22 (A**2) : -0.05640 REMARK 3 B33 (A**2) : 0.11270 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.014 1966 REMARK 3 ANGLE : 1.538 2662 REMARK 3 CHIRALITY : 0.104 294 REMARK 3 PLANARITY : 0.007 341 REMARK 3 DIHEDRAL : 13.975 740 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4YVH COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 30-MAR-15. REMARK 100 THE DEPOSITION ID IS D_1000208140. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 11-OCT-10 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : NULL REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : PHOTON FACTORY REMARK 200 BEAMLINE : BL-5A REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : NULL REMARK 200 DATA SCALING SOFTWARE : NULL REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 39872 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.600 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 200 DATA REDUNDANCY : 6.100 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 30.2000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 1UAJ REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 51.38 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.53 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: SODIUM CITRATE, CHES, VAPOR DIFFUSION, REMARK 280 SITTING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: H 3 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z REMARK 290 3555 -X+Y,-X,Z REMARK 290 4555 Y,X,-Z REMARK 290 5555 X-Y,-Y,-Z REMARK 290 6555 -X,-X+Y,-Z REMARK 290 7555 X+2/3,Y+1/3,Z+1/3 REMARK 290 8555 -Y+2/3,X-Y+1/3,Z+1/3 REMARK 290 9555 -X+Y+2/3,-X+1/3,Z+1/3 REMARK 290 10555 Y+2/3,X+1/3,-Z+1/3 REMARK 290 11555 X-Y+2/3,-Y+1/3,-Z+1/3 REMARK 290 12555 -X+2/3,-X+Y+1/3,-Z+1/3 REMARK 290 13555 X+1/3,Y+2/3,Z+2/3 REMARK 290 14555 -Y+1/3,X-Y+2/3,Z+2/3 REMARK 290 15555 -X+Y+1/3,-X+2/3,Z+2/3 REMARK 290 16555 Y+1/3,X+2/3,-Z+2/3 REMARK 290 17555 X-Y+1/3,-Y+2/3,-Z+2/3 REMARK 290 18555 -X+1/3,-X+Y+2/3,-Z+2/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 7 1.000000 0.000000 0.000000 46.88300 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 27.06791 REMARK 290 SMTRY3 7 0.000000 0.000000 1.000000 59.30233 REMARK 290 SMTRY1 8 -0.500000 -0.866025 0.000000 46.88300 REMARK 290 SMTRY2 8 0.866025 -0.500000 0.000000 27.06791 REMARK 290 SMTRY3 8 0.000000 0.000000 1.000000 59.30233 REMARK 290 SMTRY1 9 -0.500000 0.866025 0.000000 46.88300 REMARK 290 SMTRY2 9 -0.866025 -0.500000 0.000000 27.06791 REMARK 290 SMTRY3 9 0.000000 0.000000 1.000000 59.30233 REMARK 290 SMTRY1 10 -0.500000 0.866025 0.000000 46.88300 REMARK 290 SMTRY2 10 0.866025 0.500000 0.000000 27.06791 REMARK 290 SMTRY3 10 0.000000 0.000000 -1.000000 59.30233 REMARK 290 SMTRY1 11 1.000000 0.000000 0.000000 46.88300 REMARK 290 SMTRY2 11 0.000000 -1.000000 0.000000 27.06791 REMARK 290 SMTRY3 11 0.000000 0.000000 -1.000000 59.30233 REMARK 290 SMTRY1 12 -0.500000 -0.866025 0.000000 46.88300 REMARK 290 SMTRY2 12 -0.866025 0.500000 0.000000 27.06791 REMARK 290 SMTRY3 12 0.000000 0.000000 -1.000000 59.30233 REMARK 290 SMTRY1 13 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 13 0.000000 1.000000 0.000000 54.13583 REMARK 290 SMTRY3 13 0.000000 0.000000 1.000000 118.60467 REMARK 290 SMTRY1 14 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 14 0.866025 -0.500000 0.000000 54.13583 REMARK 290 SMTRY3 14 0.000000 0.000000 1.000000 118.60467 REMARK 290 SMTRY1 15 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 15 -0.866025 -0.500000 0.000000 54.13583 REMARK 290 SMTRY3 15 0.000000 0.000000 1.000000 118.60467 REMARK 290 SMTRY1 16 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 16 0.866025 0.500000 0.000000 54.13583 REMARK 290 SMTRY3 16 0.000000 0.000000 -1.000000 118.60467 REMARK 290 SMTRY1 17 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 17 0.000000 -1.000000 0.000000 54.13583 REMARK 290 SMTRY3 17 0.000000 0.000000 -1.000000 118.60467 REMARK 290 SMTRY1 18 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 18 -0.866025 0.500000 0.000000 54.13583 REMARK 290 SMTRY3 18 0.000000 0.000000 -1.000000 118.60467 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 7200 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 20950 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -27.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -0.500000 -0.866025 0.000000 46.88300 REMARK 350 BIOMT2 2 -0.866025 0.500000 0.000000 27.06791 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 59.30233 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 619 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A -19 REMARK 465 GLY A -18 REMARK 465 SER A -17 REMARK 465 SER A -16 REMARK 465 HIS A -15 REMARK 465 HIS A -14 REMARK 465 HIS A -13 REMARK 465 HIS A -12 REMARK 465 HIS A -11 REMARK 465 HIS A -10 REMARK 465 SER A -9 REMARK 465 SER A -8 REMARK 465 GLY A -7 REMARK 465 LEU A -6 REMARK 465 VAL A -5 REMARK 465 PRO A -4 REMARK 465 ARG A -3 REMARK 465 GLY A -2 REMARK 465 GLY A 161 REMARK 465 LYS A 162 REMARK 465 GLN A 163 REMARK 465 ALA A 164 REMARK 465 SER A 165 REMARK 465 ALA A 166 REMARK 465 GLU A 167 REMARK 465 GLU A 168 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OE1 GLU A 185 O HOH A 401 2.05 REMARK 500 OE2 GLU A 185 O HOH A 402 2.09 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 NE2 GLN A 90 OG SER A 170 12555 1.89 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 TYR A 115 -135.58 59.27 REMARK 500 PHE A 171 -13.64 70.30 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SFG A 301 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4YVG RELATED DB: PDB REMARK 900 RELATED ID: 4YVI RELATED DB: PDB REMARK 900 RELATED ID: 4YVJ RELATED DB: PDB REMARK 900 RELATED ID: 4YVK RELATED DB: PDB DBREF 4YVH A 1 246 UNP P43912 TRMD_HAEIN 1 246 SEQADV 4YVH MET A -19 UNP P43912 EXPRESSION TAG SEQADV 4YVH GLY A -18 UNP P43912 EXPRESSION TAG SEQADV 4YVH SER A -17 UNP P43912 EXPRESSION TAG SEQADV 4YVH SER A -16 UNP P43912 EXPRESSION TAG SEQADV 4YVH HIS A -15 UNP P43912 EXPRESSION TAG SEQADV 4YVH HIS A -14 UNP P43912 EXPRESSION TAG SEQADV 4YVH HIS A -13 UNP P43912 EXPRESSION TAG SEQADV 4YVH HIS A -12 UNP P43912 EXPRESSION TAG SEQADV 4YVH HIS A -11 UNP P43912 EXPRESSION TAG SEQADV 4YVH HIS A -10 UNP P43912 EXPRESSION TAG SEQADV 4YVH SER A -9 UNP P43912 EXPRESSION TAG SEQADV 4YVH SER A -8 UNP P43912 EXPRESSION TAG SEQADV 4YVH GLY A -7 UNP P43912 EXPRESSION TAG SEQADV 4YVH LEU A -6 UNP P43912 EXPRESSION TAG SEQADV 4YVH VAL A -5 UNP P43912 EXPRESSION TAG SEQADV 4YVH PRO A -4 UNP P43912 EXPRESSION TAG SEQADV 4YVH ARG A -3 UNP P43912 EXPRESSION TAG SEQADV 4YVH GLY A -2 UNP P43912 EXPRESSION TAG SEQADV 4YVH SER A -1 UNP P43912 EXPRESSION TAG SEQADV 4YVH HIS A 0 UNP P43912 EXPRESSION TAG SEQRES 1 A 266 MET GLY SER SER HIS HIS HIS HIS HIS HIS SER SER GLY SEQRES 2 A 266 LEU VAL PRO ARG GLY SER HIS MET TRP ILE GLY VAL ILE SEQRES 3 A 266 SER LEU PHE PRO GLU MET PHE LYS ALA ILE THR GLU PHE SEQRES 4 A 266 GLY VAL THR GLY ARG ALA VAL LYS HIS ASN LEU LEU LYS SEQRES 5 A 266 VAL GLU CYS TRP ASN PRO ARG ASP PHE THR PHE ASP LYS SEQRES 6 A 266 HIS LYS THR VAL ASP ASP ARG PRO TYR GLY GLY GLY PRO SEQRES 7 A 266 GLY MET LEU MET MET VAL GLN PRO LEU ARG ASP ALA ILE SEQRES 8 A 266 HIS THR ALA LYS ALA ALA ALA GLY GLU GLY ALA LYS VAL SEQRES 9 A 266 ILE TYR LEU SER PRO GLN GLY ARG LYS LEU ASP GLN GLY SEQRES 10 A 266 GLY VAL THR GLU LEU ALA GLN ASN GLN LYS LEU ILE LEU SEQRES 11 A 266 VAL CYS GLY ARG TYR GLU GLY ILE ASP GLU ARG LEU ILE SEQRES 12 A 266 GLN THR GLU ILE ASP GLU GLU TRP SER ILE GLY ASP TYR SEQRES 13 A 266 VAL LEU THR GLY GLY GLU LEU PRO ALA MET THR LEU ILE SEQRES 14 A 266 ASP ALA VAL ALA ARG PHE ILE PRO GLY VAL LEU GLY LYS SEQRES 15 A 266 GLN ALA SER ALA GLU GLU ASP SER PHE ALA ASP GLY LEU SEQRES 16 A 266 LEU ASP CYS PRO HIS TYR THR ARG PRO GLU VAL LEU GLU SEQRES 17 A 266 GLY LEU THR VAL PRO PRO VAL LEU MET SER GLY HIS HIS SEQRES 18 A 266 GLU GLU ILE ARG LYS TRP ARG LEU LYS GLN SER LEU GLN SEQRES 19 A 266 ARG THR TRP LEU ARG ARG PRO GLU LEU LEU GLU GLY LEU SEQRES 20 A 266 ALA LEU THR ASP GLU GLN ARG LYS LEU LEU LYS GLU ALA SEQRES 21 A 266 GLN ALA GLU HIS ASN SER HET SFG A 301 27 HETNAM SFG SINEFUNGIN HETSYN SFG ADENOSYL-ORNITHINE FORMUL 2 SFG C15 H23 N7 O5 FORMUL 3 HOH *242(H2 O) HELIX 1 AA1 PHE A 9 MET A 12 5 4 HELIX 2 AA2 PHE A 13 GLU A 18 1 6 HELIX 3 AA3 PHE A 19 HIS A 28 1 10 HELIX 4 AA4 ASN A 37 THR A 42 5 6 HELIX 5 AA5 MET A 63 GLY A 79 1 17 HELIX 6 AA6 ASP A 95 ALA A 103 1 9 HELIX 7 AA7 ASP A 119 ILE A 127 1 9 HELIX 8 AA8 GLY A 141 ARG A 154 1 14 HELIX 9 AA9 PRO A 193 SER A 198 1 6 HELIX 10 AB1 HIS A 200 ARG A 220 1 21 HELIX 11 AB2 ARG A 220 GLY A 226 1 7 HELIX 12 AB3 THR A 230 SER A 246 1 17 SHEET 1 AA1 6 LEU A 31 TRP A 36 0 SHEET 2 AA1 6 MET A 1 ILE A 6 1 N VAL A 5 O TRP A 36 SHEET 3 AA1 6 LYS A 107 VAL A 111 1 O LEU A 110 N GLY A 4 SHEET 4 AA1 6 LYS A 83 LEU A 87 1 N ILE A 85 O ILE A 109 SHEET 5 AA1 6 GLU A 129 SER A 132 1 O TRP A 131 N TYR A 86 SHEET 6 AA1 6 ARG A 92 LYS A 93 1 N ARG A 92 O SER A 132 SHEET 1 AA2 2 ASP A 50 ASP A 51 0 SHEET 2 AA2 2 LEU A 61 MET A 62 -1 O LEU A 61 N ASP A 51 SHEET 1 AA3 2 VAL A 186 LEU A 187 0 SHEET 2 AA3 2 LEU A 190 THR A 191 -1 O LEU A 190 N LEU A 187 CISPEP 1 ARG A 183 PRO A 184 0 4.11 SITE 1 AC1 21 TYR A 86 LEU A 87 SER A 88 PRO A 89 SITE 2 AC1 21 GLN A 90 GLY A 113 TYR A 115 GLU A 116 SITE 3 AC1 21 GLY A 117 SER A 132 ILE A 133 GLY A 134 SITE 4 AC1 21 TYR A 136 LEU A 138 GLY A 140 GLY A 141 SITE 5 AC1 21 PRO A 144 ASP A 169 SER A 170 ASP A 177 SITE 6 AC1 21 HOH A 464 CRYST1 93.766 93.766 177.907 90.00 90.00 120.00 H 3 2 18 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.010665 0.006157 0.000000 0.00000 SCALE2 0.000000 0.012315 0.000000 0.00000 SCALE3 0.000000 0.000000 0.005621 0.00000