HEADER SUGAR BINDING PROTEIN 20-MAR-15 4YW6 TITLE STRUCTURAL INSIGHT INTO DIVALENT GALACTOSIDE BINDING TO PSEUDOMONAS TITLE 2 AERUGINOSA LECTIN LECA COMPND MOL_ID: 1; COMPND 2 MOLECULE: PA-I GALACTOPHILIC LECTIN; COMPND 3 CHAIN: A, B, C, D; COMPND 4 SYNONYM: PA-IL,GALACTOSE-BINDING LECTIN; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: PSEUDOMONAS AERUGINOSA; SOURCE 3 ORGANISM_TAXID: 287; SOURCE 4 GENE: LECA, PA1L, PA2570; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS GALACTOSIDES, LECTINS, SUGAR BINDING PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR R.VISINI,X.JIN,G.MICHAUD,M.BERGMANN,E.GILLON,A.IMBERTY,A.STOCKER, AUTHOR 2 T.DARBRE,R.PIETERS,J.-L.REYMOND REVDAT 3 10-JAN-24 4YW6 1 LINK REVDAT 2 02-DEC-15 4YW6 1 JRNL REVDAT 1 09-SEP-15 4YW6 0 JRNL AUTH R.VISINI,X.JIN,M.BERGMANN,G.MICHAUD,F.PERTICI,O.FU,A.PUKIN, JRNL AUTH 2 T.R.BRANSON,D.M.THIES-WEESIE,J.KEMMINK,E.GILLON,A.IMBERTY, JRNL AUTH 3 A.STOCKER,T.DARBRE,R.J.PIETERS,J.L.REYMOND JRNL TITL STRUCTURAL INSIGHT INTO MULTIVALENT GALACTOSIDE BINDING TO JRNL TITL 2 PSEUDOMONAS AERUGINOSA LECTIN LECA. JRNL REF ACS CHEM.BIOL. V. 10 2455 2015 JRNL REFN ESSN 1554-8937 JRNL PMID 26295304 JRNL DOI 10.1021/ACSCHEMBIO.5B00302 REMARK 2 REMARK 2 RESOLUTION. 1.40 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.40 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 23.93 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.960 REMARK 3 COMPLETENESS FOR RANGE (%) : 83.3 REMARK 3 NUMBER OF REFLECTIONS : 127114 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.186 REMARK 3 R VALUE (WORKING SET) : 0.186 REMARK 3 FREE R VALUE : 0.206 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 1.540 REMARK 3 FREE R VALUE TEST SET COUNT : 1961 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 23.9379 - 3.3713 0.90 9627 165 0.1614 0.1743 REMARK 3 2 3.3713 - 2.6770 0.98 10199 162 0.1726 0.2006 REMARK 3 3 2.6770 - 2.3390 0.97 10169 149 0.1768 0.1933 REMARK 3 4 2.3390 - 2.1253 0.81 8678 136 0.1864 0.2241 REMARK 3 5 2.1253 - 1.9730 0.78 8422 124 0.2037 0.2342 REMARK 3 6 1.9730 - 1.8567 0.52 5551 92 0.2252 0.2035 REMARK 3 7 1.8567 - 1.7638 0.96 10265 153 0.1542 0.1583 REMARK 3 8 1.7638 - 1.6870 0.95 10107 161 0.1649 0.1964 REMARK 3 9 1.6870 - 1.6221 0.95 10309 153 0.1446 0.1731 REMARK 3 10 1.6221 - 1.5661 0.95 10109 159 0.1623 0.2140 REMARK 3 11 1.5661 - 1.5172 0.71 7558 129 0.2791 0.2425 REMARK 3 12 1.5172 - 1.4738 0.67 7286 107 0.2830 0.3138 REMARK 3 13 1.4738 - 1.4350 0.67 7099 120 0.4110 0.4151 REMARK 3 14 1.4350 - 1.4000 0.91 9774 151 0.2134 0.2770 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.130 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 21.430 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 10.45 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 18.98 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.009 3847 REMARK 3 ANGLE : 1.379 5263 REMARK 3 CHIRALITY : 0.082 569 REMARK 3 PLANARITY : 0.007 690 REMARK 3 DIHEDRAL : 13.462 1311 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4YW6 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 20-MAR-15. REMARK 100 THE DEPOSITION ID IS D_1000208179. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 09-OCT-13 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 4.6 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SLS REMARK 200 BEAMLINE : X06DA REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.00003 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 2M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALA 3.3.21 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 129508 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.400 REMARK 200 RESOLUTION RANGE LOW (A) : 67.032 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 84.9 REMARK 200 DATA REDUNDANCY : 2.900 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.05800 REMARK 200 FOR THE DATA SET : 7.7000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.40 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.48 REMARK 200 COMPLETENESS FOR SHELL (%) : 81.1 REMARK 200 DATA REDUNDANCY IN SHELL : 2.90 REMARK 200 R MERGE FOR SHELL (I) : 0.26700 REMARK 200 R SYM FOR SHELL (I) : 0.26700 REMARK 200 FOR SHELL : 1.100 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 1OKO REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 68.58 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.91 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 1.5M AMMONIUM SULFATE, PH 4.6, VAPOR REMARK 280 DIFFUSION, HANGING DROP, TEMPERATURE 291K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 6140 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 20020 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -3.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OE1 GLN A 120 NE2 GLN C 120 2.09 REMARK 500 O HOH C 1028 O HOH C 1070 2.10 REMARK 500 O HOH C 1030 O HOH C 1153 2.11 REMARK 500 O HOH C 1068 O HOH C 1140 2.14 REMARK 500 O HOH C 1140 O HOH D 1074 2.16 REMARK 500 O HOH C 1021 O HOH C 1022 2.17 REMARK 500 O HOH B 1029 O HOH B 1183 2.17 REMARK 500 O HOH D 1156 O HOH D 1220 2.18 REMARK 500 O HOH B 1103 O HOH B 1166 2.18 REMARK 500 O HOH A 1173 O HOH A 1213 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 1011 O HOH D 1023 1566 2.08 REMARK 500 O HOH A 1022 O HOH D 1029 1666 2.08 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 78 -130.84 57.70 REMARK 500 ASN B 78 -130.79 57.31 REMARK 500 ASN C 78 -133.05 58.87 REMARK 500 ASN D 78 -131.13 57.15 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A1217 DISTANCE = 6.06 ANGSTROMS REMARK 525 HOH B1220 DISTANCE = 6.16 ANGSTROMS REMARK 525 HOH B1221 DISTANCE = 6.78 ANGSTROMS REMARK 525 HOH B1222 DISTANCE = 7.10 ANGSTROMS REMARK 525 HOH B1223 DISTANCE = 7.21 ANGSTROMS REMARK 525 HOH C1227 DISTANCE = 5.98 ANGSTROMS REMARK 525 HOH C1228 DISTANCE = 6.15 ANGSTROMS REMARK 525 HOH C1229 DISTANCE = 7.07 ANGSTROMS REMARK 525 HOH C1230 DISTANCE = 7.99 ANGSTROMS REMARK 525 HOH C1231 DISTANCE = 8.61 ANGSTROMS REMARK 525 HOH D1223 DISTANCE = 6.50 ANGSTROMS REMARK 525 HOH D1224 DISTANCE = 6.85 ANGSTROMS REMARK 525 HOH D1225 DISTANCE = 7.32 ANGSTROMS REMARK 525 HOH D1226 DISTANCE = 7.90 ANGSTROMS REMARK 525 HOH D1227 DISTANCE = 8.62 ANGSTROMS REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 901 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 TYR A 36 O REMARK 620 2 ASP A 100 OD2 104.5 REMARK 620 3 THR A 104 O 162.8 88.7 REMARK 620 4 ASN A 107 OD1 84.6 150.2 78.5 REMARK 620 5 ASN A 108 OD1 77.5 76.6 95.5 78.0 REMARK 620 6 G0P A 902 O41 79.6 75.0 115.0 134.8 137.3 REMARK 620 7 G0P A 902 O43 91.8 132.0 87.1 74.7 151.4 63.9 REMARK 620 N 1 2 3 4 5 6 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA B 901 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 TYR B 36 O REMARK 620 2 ASP B 100 OD2 104.8 REMARK 620 3 THR B 104 O 162.0 89.5 REMARK 620 4 ASN B 107 OD1 84.8 150.2 77.5 REMARK 620 5 ASN B 108 OD1 78.4 76.7 94.7 77.8 REMARK 620 6 G0P B 902 O43 92.4 131.0 86.1 75.4 152.3 REMARK 620 7 G0P B 902 O41 79.6 74.7 115.3 135.1 137.7 63.7 REMARK 620 N 1 2 3 4 5 6 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA C 901 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 TYR C 36 O REMARK 620 2 ASP C 100 OD2 105.0 REMARK 620 3 THR C 104 O 163.6 87.9 REMARK 620 4 ASN C 107 OD1 84.8 149.6 79.0 REMARK 620 5 ASN C 108 OD1 78.7 75.9 95.1 78.0 REMARK 620 6 G0P C 902 O41 79.0 74.3 114.9 136.2 136.3 REMARK 620 7 G0P C 902 O43 91.6 130.8 87.3 76.3 153.2 63.8 REMARK 620 N 1 2 3 4 5 6 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA D 901 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 TYR D 36 O REMARK 620 2 ASP D 100 OD2 104.8 REMARK 620 3 THR D 104 O 163.7 88.0 REMARK 620 4 ASN D 107 OD1 84.6 150.5 79.4 REMARK 620 5 ASN D 108 OD1 78.4 76.6 95.4 78.2 REMARK 620 6 G0P D 902 O41 79.3 74.4 114.3 135.1 137.1 REMARK 620 7 G0P D 902 O43 91.8 130.4 87.1 75.8 153.0 63.2 REMARK 620 N 1 2 3 4 5 6 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CA A 901 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue G0P A 902 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CA B 901 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue G0P B 902 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CA C 901 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue G0P C 902 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CA D 901 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue G0P D 902 DBREF 4YW6 A 1 121 UNP Q05097 PA1L_PSEAE 2 122 DBREF 4YW6 B 1 121 UNP Q05097 PA1L_PSEAE 2 122 DBREF 4YW6 C 1 121 UNP Q05097 PA1L_PSEAE 2 122 DBREF 4YW6 D 1 121 UNP Q05097 PA1L_PSEAE 2 122 SEQRES 1 A 121 ALA TRP LYS GLY GLU VAL LEU ALA ASN ASN GLU ALA GLY SEQRES 2 A 121 GLN VAL THR SER ILE ILE TYR ASN PRO GLY ASP VAL ILE SEQRES 3 A 121 THR ILE VAL ALA ALA GLY TRP ALA SER TYR GLY PRO THR SEQRES 4 A 121 GLN LYS TRP GLY PRO GLN GLY ASP ARG GLU HIS PRO ASP SEQRES 5 A 121 GLN GLY LEU ILE CYS HIS ASP ALA PHE CYS GLY ALA LEU SEQRES 6 A 121 VAL MET LYS ILE GLY ASN SER GLY THR ILE PRO VAL ASN SEQRES 7 A 121 THR GLY LEU PHE ARG TRP VAL ALA PRO ASN ASN VAL GLN SEQRES 8 A 121 GLY ALA ILE THR LEU ILE TYR ASN ASP VAL PRO GLY THR SEQRES 9 A 121 TYR GLY ASN ASN SER GLY SER PHE SER VAL ASN ILE GLY SEQRES 10 A 121 LYS ASP GLN SER SEQRES 1 B 121 ALA TRP LYS GLY GLU VAL LEU ALA ASN ASN GLU ALA GLY SEQRES 2 B 121 GLN VAL THR SER ILE ILE TYR ASN PRO GLY ASP VAL ILE SEQRES 3 B 121 THR ILE VAL ALA ALA GLY TRP ALA SER TYR GLY PRO THR SEQRES 4 B 121 GLN LYS TRP GLY PRO GLN GLY ASP ARG GLU HIS PRO ASP SEQRES 5 B 121 GLN GLY LEU ILE CYS HIS ASP ALA PHE CYS GLY ALA LEU SEQRES 6 B 121 VAL MET LYS ILE GLY ASN SER GLY THR ILE PRO VAL ASN SEQRES 7 B 121 THR GLY LEU PHE ARG TRP VAL ALA PRO ASN ASN VAL GLN SEQRES 8 B 121 GLY ALA ILE THR LEU ILE TYR ASN ASP VAL PRO GLY THR SEQRES 9 B 121 TYR GLY ASN ASN SER GLY SER PHE SER VAL ASN ILE GLY SEQRES 10 B 121 LYS ASP GLN SER SEQRES 1 C 121 ALA TRP LYS GLY GLU VAL LEU ALA ASN ASN GLU ALA GLY SEQRES 2 C 121 GLN VAL THR SER ILE ILE TYR ASN PRO GLY ASP VAL ILE SEQRES 3 C 121 THR ILE VAL ALA ALA GLY TRP ALA SER TYR GLY PRO THR SEQRES 4 C 121 GLN LYS TRP GLY PRO GLN GLY ASP ARG GLU HIS PRO ASP SEQRES 5 C 121 GLN GLY LEU ILE CYS HIS ASP ALA PHE CYS GLY ALA LEU SEQRES 6 C 121 VAL MET LYS ILE GLY ASN SER GLY THR ILE PRO VAL ASN SEQRES 7 C 121 THR GLY LEU PHE ARG TRP VAL ALA PRO ASN ASN VAL GLN SEQRES 8 C 121 GLY ALA ILE THR LEU ILE TYR ASN ASP VAL PRO GLY THR SEQRES 9 C 121 TYR GLY ASN ASN SER GLY SER PHE SER VAL ASN ILE GLY SEQRES 10 C 121 LYS ASP GLN SER SEQRES 1 D 121 ALA TRP LYS GLY GLU VAL LEU ALA ASN ASN GLU ALA GLY SEQRES 2 D 121 GLN VAL THR SER ILE ILE TYR ASN PRO GLY ASP VAL ILE SEQRES 3 D 121 THR ILE VAL ALA ALA GLY TRP ALA SER TYR GLY PRO THR SEQRES 4 D 121 GLN LYS TRP GLY PRO GLN GLY ASP ARG GLU HIS PRO ASP SEQRES 5 D 121 GLN GLY LEU ILE CYS HIS ASP ALA PHE CYS GLY ALA LEU SEQRES 6 D 121 VAL MET LYS ILE GLY ASN SER GLY THR ILE PRO VAL ASN SEQRES 7 D 121 THR GLY LEU PHE ARG TRP VAL ALA PRO ASN ASN VAL GLN SEQRES 8 D 121 GLY ALA ILE THR LEU ILE TYR ASN ASP VAL PRO GLY THR SEQRES 9 D 121 TYR GLY ASN ASN SER GLY SER PHE SER VAL ASN ILE GLY SEQRES 10 D 121 LYS ASP GLN SER HET CA A 901 1 HET G0P A 902 69 HET CA B 901 1 HET G0P B 902 69 HET CA C 901 1 HET G0P C 902 69 HET CA D 901 1 HET G0P D 902 69 HETNAM CA CALCIUM ION HETNAM G0P N-[(2S)-6-AMINO-1-OXO-1-(PYRROLIDIN-1-YL)HEXAN-2-YL]-4- HETNAM 2 G0P (BETA-D-GALACTOPYRANOSYLOXY)BENZAMIDE FORMUL 5 CA 4(CA 2+) FORMUL 6 G0P 4(C23 H35 N3 O8) FORMUL 13 HOH *898(H2 O) HELIX 1 AA1 THR A 104 ASN A 108 5 5 HELIX 2 AA2 THR B 104 ASN B 108 5 5 HELIX 3 AA3 THR C 104 ASN C 108 5 5 HELIX 4 AA4 THR D 104 ASN D 108 5 5 SHEET 1 AA1 4 TRP A 2 LEU A 7 0 SHEET 2 AA1 4 SER A 109 LYS A 118 -1 O VAL A 114 N GLY A 4 SHEET 3 AA1 4 ILE A 26 SER A 35 -1 N SER A 35 O SER A 109 SHEET 4 AA1 4 GLY A 80 TRP A 84 -1 O TRP A 84 N ILE A 26 SHEET 1 AA2 4 GLN A 14 TYR A 20 0 SHEET 2 AA2 4 GLY A 92 TYR A 98 -1 O LEU A 96 N GLN A 14 SHEET 3 AA2 4 LEU A 65 ILE A 69 -1 N VAL A 66 O ILE A 97 SHEET 4 AA2 4 ILE A 75 PRO A 76 -1 O ILE A 75 N MET A 67 SHEET 1 AA3 4 TRP B 2 LEU B 7 0 SHEET 2 AA3 4 SER B 109 ASP B 119 -1 O VAL B 114 N GLY B 4 SHEET 3 AA3 4 VAL B 25 SER B 35 -1 N VAL B 25 O ASP B 119 SHEET 4 AA3 4 GLY B 80 TRP B 84 -1 O TRP B 84 N ILE B 26 SHEET 1 AA4 4 GLN B 14 TYR B 20 0 SHEET 2 AA4 4 GLY B 92 TYR B 98 -1 O LEU B 96 N GLN B 14 SHEET 3 AA4 4 LEU B 65 ILE B 69 -1 N VAL B 66 O ILE B 97 SHEET 4 AA4 4 ILE B 75 PRO B 76 -1 O ILE B 75 N MET B 67 SHEET 1 AA5 4 TRP C 2 LEU C 7 0 SHEET 2 AA5 4 SER C 109 LYS C 118 -1 O VAL C 114 N GLY C 4 SHEET 3 AA5 4 ILE C 26 SER C 35 -1 N ALA C 31 O SER C 113 SHEET 4 AA5 4 GLY C 80 TRP C 84 -1 O TRP C 84 N ILE C 26 SHEET 1 AA6 4 GLN C 14 TYR C 20 0 SHEET 2 AA6 4 GLY C 92 TYR C 98 -1 O LEU C 96 N GLN C 14 SHEET 3 AA6 4 LEU C 65 ILE C 69 -1 N VAL C 66 O ILE C 97 SHEET 4 AA6 4 ILE C 75 PRO C 76 -1 O ILE C 75 N MET C 67 SHEET 1 AA7 4 TRP D 2 LEU D 7 0 SHEET 2 AA7 4 SER D 109 LYS D 118 -1 O VAL D 114 N GLY D 4 SHEET 3 AA7 4 ILE D 26 SER D 35 -1 N ALA D 31 O SER D 113 SHEET 4 AA7 4 GLY D 80 TRP D 84 -1 O TRP D 84 N ILE D 26 SHEET 1 AA8 4 GLN D 14 TYR D 20 0 SHEET 2 AA8 4 GLY D 92 TYR D 98 -1 O LEU D 96 N GLN D 14 SHEET 3 AA8 4 LEU D 65 ILE D 69 -1 N VAL D 66 O ILE D 97 SHEET 4 AA8 4 ILE D 75 PRO D 76 -1 O ILE D 75 N MET D 67 LINK O TYR A 36 CA CA A 901 1555 1555 2.32 LINK OD2 ASP A 100 CA CA A 901 1555 1555 2.48 LINK O THR A 104 CA CA A 901 1555 1555 2.30 LINK OD1 ASN A 107 CA CA A 901 1555 1555 2.45 LINK OD1 ASN A 108 CA CA A 901 1555 1555 2.35 LINK CA CA A 901 O41 G0P A 902 1555 1555 2.48 LINK CA CA A 901 O43 G0P A 902 1555 1555 2.46 LINK O TYR B 36 CA CA B 901 1555 1555 2.33 LINK OD2 ASP B 100 CA CA B 901 1555 1555 2.50 LINK O THR B 104 CA CA B 901 1555 1555 2.34 LINK OD1 ASN B 107 CA CA B 901 1555 1555 2.46 LINK OD1 ASN B 108 CA CA B 901 1555 1555 2.32 LINK CA CA B 901 O43 G0P B 902 1555 1555 2.43 LINK CA CA B 901 O41 G0P B 902 1555 1555 2.45 LINK O TYR C 36 CA CA C 901 1555 1555 2.32 LINK OD2 ASP C 100 CA CA C 901 1555 1555 2.49 LINK O THR C 104 CA CA C 901 1555 1555 2.31 LINK OD1 ASN C 107 CA CA C 901 1555 1555 2.44 LINK OD1 ASN C 108 CA CA C 901 1555 1555 2.37 LINK CA CA C 901 O41 G0P C 902 1555 1555 2.46 LINK CA CA C 901 O43 G0P C 902 1555 1555 2.42 LINK O TYR D 36 CA CA D 901 1555 1555 2.32 LINK OD2 ASP D 100 CA CA D 901 1555 1555 2.48 LINK O THR D 104 CA CA D 901 1555 1555 2.29 LINK OD1 ASN D 107 CA CA D 901 1555 1555 2.44 LINK OD1 ASN D 108 CA CA D 901 1555 1555 2.36 LINK CA CA D 901 O41 G0P D 902 1555 1555 2.50 LINK CA CA D 901 O43 G0P D 902 1555 1555 2.44 SITE 1 AC1 6 TYR A 36 ASP A 100 THR A 104 ASN A 107 SITE 2 AC1 6 ASN A 108 G0P A 902 SITE 1 AC2 12 TYR A 36 HIS A 50 GLN A 53 ASP A 100 SITE 2 AC2 12 THR A 104 ASN A 107 CA A 901 HOH A1045 SITE 3 AC2 12 HOH A1048 HOH A1054 HOH A1060 HOH A1069 SITE 1 AC3 6 TYR B 36 ASP B 100 THR B 104 ASN B 107 SITE 2 AC3 6 ASN B 108 G0P B 902 SITE 1 AC4 13 TYR B 36 HIS B 50 GLN B 53 ASP B 100 SITE 2 AC4 13 THR B 104 ASN B 107 CA B 901 HOH B1035 SITE 3 AC4 13 HOH B1053 HOH B1066 HOH B1070 HOH B1072 SITE 4 AC4 13 HOH B1086 SITE 1 AC5 6 TYR C 36 ASP C 100 THR C 104 ASN C 107 SITE 2 AC5 6 ASN C 108 G0P C 902 SITE 1 AC6 13 TYR C 36 HIS C 50 GLN C 53 ASP C 100 SITE 2 AC6 13 THR C 104 ASN C 107 CA C 901 HOH C1032 SITE 3 AC6 13 HOH C1062 HOH C1071 HOH C1077 HOH C1078 SITE 4 AC6 13 HOH C1097 SITE 1 AC7 6 TYR D 36 ASP D 100 THR D 104 ASN D 107 SITE 2 AC7 6 ASN D 108 G0P D 902 SITE 1 AC8 13 TYR D 36 HIS D 50 GLN D 53 ASP D 100 SITE 2 AC8 13 THR D 104 ASN D 107 CA D 901 HOH D1032 SITE 3 AC8 13 HOH D1046 HOH D1061 HOH D1077 HOH D1079 SITE 4 AC8 13 HOH D1081 CRYST1 40.870 72.980 79.020 117.52 104.99 90.00 P 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.024468 0.000000 0.007460 0.00000 SCALE2 0.000000 0.013702 0.007464 0.00000 SCALE3 0.000000 0.000000 0.014918 0.00000 CONECT 259 3609 CONECT 751 3609 CONECT 773 3609 CONECT 799 3609 CONECT 807 3609 CONECT 1161 3679 CONECT 1653 3679 CONECT 1675 3679 CONECT 1701 3679 CONECT 1709 3679 CONECT 2063 3749 CONECT 2555 3749 CONECT 2577 3749 CONECT 2603 3749 CONECT 2611 3749 CONECT 2965 3819 CONECT 3457 3819 CONECT 3479 3819 CONECT 3505 3819 CONECT 3513 3819 CONECT 3609 259 751 773 799 CONECT 3609 807 3639 3641 CONECT 3610 3611 3614 3644 3645 CONECT 3611 3610 3612 3646 3647 CONECT 3612 3611 3613 3648 3649 CONECT 3613 3612 3614 3650 3651 CONECT 3614 3610 3613 3615 CONECT 3615 3614 3616 3617 CONECT 3616 3615 CONECT 3617 3615 3618 3623 3652 CONECT 3618 3617 3619 3653 3654 CONECT 3619 3618 3620 3655 3656 CONECT 3620 3619 3621 3657 3658 CONECT 3621 3620 3622 3659 3660 CONECT 3622 3621 3661 3662 CONECT 3623 3617 3624 3663 CONECT 3624 3623 3625 3626 CONECT 3625 3624 CONECT 3626 3624 3627 3631 CONECT 3627 3626 3628 3664 CONECT 3628 3627 3629 3665 CONECT 3629 3628 3630 3632 CONECT 3630 3629 3631 3666 CONECT 3631 3626 3630 3667 CONECT 3632 3629 3633 CONECT 3633 3632 3634 3642 3668 CONECT 3634 3633 3635 CONECT 3635 3634 3636 3638 3669 CONECT 3636 3635 3637 3670 3671 CONECT 3637 3636 3672 CONECT 3638 3635 3639 3640 3673 CONECT 3639 3609 3638 3674 CONECT 3640 3638 3641 3642 3675 CONECT 3641 3609 3640 3676 CONECT 3642 3633 3640 3643 3677 CONECT 3643 3642 3678 CONECT 3644 3610 CONECT 3645 3610 CONECT 3646 3611 CONECT 3647 3611 CONECT 3648 3612 CONECT 3649 3612 CONECT 3650 3613 CONECT 3651 3613 CONECT 3652 3617 CONECT 3653 3618 CONECT 3654 3618 CONECT 3655 3619 CONECT 3656 3619 CONECT 3657 3620 CONECT 3658 3620 CONECT 3659 3621 CONECT 3660 3621 CONECT 3661 3622 CONECT 3662 3622 CONECT 3663 3623 CONECT 3664 3627 CONECT 3665 3628 CONECT 3666 3630 CONECT 3667 3631 CONECT 3668 3633 CONECT 3669 3635 CONECT 3670 3636 CONECT 3671 3636 CONECT 3672 3637 CONECT 3673 3638 CONECT 3674 3639 CONECT 3675 3640 CONECT 3676 3641 CONECT 3677 3642 CONECT 3678 3643 CONECT 3679 1161 1653 1675 1701 CONECT 3679 1709 3709 3711 CONECT 3680 3681 3684 3714 3715 CONECT 3681 3680 3682 3716 3717 CONECT 3682 3681 3683 3718 3719 CONECT 3683 3682 3684 3720 3721 CONECT 3684 3680 3683 3685 CONECT 3685 3684 3686 3687 CONECT 3686 3685 CONECT 3687 3685 3688 3693 3722 CONECT 3688 3687 3689 3723 3724 CONECT 3689 3688 3690 3725 3726 CONECT 3690 3689 3691 3727 3728 CONECT 3691 3690 3692 3729 3730 CONECT 3692 3691 3731 3732 CONECT 3693 3687 3694 3733 CONECT 3694 3693 3695 3696 CONECT 3695 3694 CONECT 3696 3694 3697 3701 CONECT 3697 3696 3698 3734 CONECT 3698 3697 3699 3735 CONECT 3699 3698 3700 3702 CONECT 3700 3699 3701 3736 CONECT 3701 3696 3700 3737 CONECT 3702 3699 3703 CONECT 3703 3702 3704 3712 3738 CONECT 3704 3703 3705 CONECT 3705 3704 3706 3708 3739 CONECT 3706 3705 3707 3740 3741 CONECT 3707 3706 3742 CONECT 3708 3705 3709 3710 3743 CONECT 3709 3679 3708 3744 CONECT 3710 3708 3711 3712 3745 CONECT 3711 3679 3710 3746 CONECT 3712 3703 3710 3713 3747 CONECT 3713 3712 3748 CONECT 3714 3680 CONECT 3715 3680 CONECT 3716 3681 CONECT 3717 3681 CONECT 3718 3682 CONECT 3719 3682 CONECT 3720 3683 CONECT 3721 3683 CONECT 3722 3687 CONECT 3723 3688 CONECT 3724 3688 CONECT 3725 3689 CONECT 3726 3689 CONECT 3727 3690 CONECT 3728 3690 CONECT 3729 3691 CONECT 3730 3691 CONECT 3731 3692 CONECT 3732 3692 CONECT 3733 3693 CONECT 3734 3697 CONECT 3735 3698 CONECT 3736 3700 CONECT 3737 3701 CONECT 3738 3703 CONECT 3739 3705 CONECT 3740 3706 CONECT 3741 3706 CONECT 3742 3707 CONECT 3743 3708 CONECT 3744 3709 CONECT 3745 3710 CONECT 3746 3711 CONECT 3747 3712 CONECT 3748 3713 CONECT 3749 2063 2555 2577 2603 CONECT 3749 2611 3779 3781 CONECT 3750 3751 3754 3784 3785 CONECT 3751 3750 3752 3786 3787 CONECT 3752 3751 3753 3788 3789 CONECT 3753 3752 3754 3790 3791 CONECT 3754 3750 3753 3755 CONECT 3755 3754 3756 3757 CONECT 3756 3755 CONECT 3757 3755 3758 3763 3792 CONECT 3758 3757 3759 3793 3794 CONECT 3759 3758 3760 3795 3796 CONECT 3760 3759 3761 3797 3798 CONECT 3761 3760 3762 3799 3800 CONECT 3762 3761 3801 3802 CONECT 3763 3757 3764 3803 CONECT 3764 3763 3765 3766 CONECT 3765 3764 CONECT 3766 3764 3767 3771 CONECT 3767 3766 3768 3804 CONECT 3768 3767 3769 3805 CONECT 3769 3768 3770 3772 CONECT 3770 3769 3771 3806 CONECT 3771 3766 3770 3807 CONECT 3772 3769 3773 CONECT 3773 3772 3774 3782 3808 CONECT 3774 3773 3775 CONECT 3775 3774 3776 3778 3809 CONECT 3776 3775 3777 3810 3811 CONECT 3777 3776 3812 CONECT 3778 3775 3779 3780 3813 CONECT 3779 3749 3778 3814 CONECT 3780 3778 3781 3782 3815 CONECT 3781 3749 3780 3816 CONECT 3782 3773 3780 3783 3817 CONECT 3783 3782 3818 CONECT 3784 3750 CONECT 3785 3750 CONECT 3786 3751 CONECT 3787 3751 CONECT 3788 3752 CONECT 3789 3752 CONECT 3790 3753 CONECT 3791 3753 CONECT 3792 3757 CONECT 3793 3758 CONECT 3794 3758 CONECT 3795 3759 CONECT 3796 3759 CONECT 3797 3760 CONECT 3798 3760 CONECT 3799 3761 CONECT 3800 3761 CONECT 3801 3762 CONECT 3802 3762 CONECT 3803 3763 CONECT 3804 3767 CONECT 3805 3768 CONECT 3806 3770 CONECT 3807 3771 CONECT 3808 3773 CONECT 3809 3775 CONECT 3810 3776 CONECT 3811 3776 CONECT 3812 3777 CONECT 3813 3778 CONECT 3814 3779 CONECT 3815 3780 CONECT 3816 3781 CONECT 3817 3782 CONECT 3818 3783 CONECT 3819 2965 3457 3479 3505 CONECT 3819 3513 3849 3851 CONECT 3820 3821 3824 3854 3855 CONECT 3821 3820 3822 3856 3857 CONECT 3822 3821 3823 3858 3859 CONECT 3823 3822 3824 3860 3861 CONECT 3824 3820 3823 3825 CONECT 3825 3824 3826 3827 CONECT 3826 3825 CONECT 3827 3825 3828 3833 3862 CONECT 3828 3827 3829 3863 3864 CONECT 3829 3828 3830 3865 3866 CONECT 3830 3829 3831 3867 3868 CONECT 3831 3830 3832 3869 3870 CONECT 3832 3831 3871 3872 CONECT 3833 3827 3834 3873 CONECT 3834 3833 3835 3836 CONECT 3835 3834 CONECT 3836 3834 3837 3841 CONECT 3837 3836 3838 3874 CONECT 3838 3837 3839 3875 CONECT 3839 3838 3840 3842 CONECT 3840 3839 3841 3876 CONECT 3841 3836 3840 3877 CONECT 3842 3839 3843 CONECT 3843 3842 3844 3852 3878 CONECT 3844 3843 3845 CONECT 3845 3844 3846 3848 3879 CONECT 3846 3845 3847 3880 3881 CONECT 3847 3846 3882 CONECT 3848 3845 3849 3850 3883 CONECT 3849 3819 3848 3884 CONECT 3850 3848 3851 3852 3885 CONECT 3851 3819 3850 3886 CONECT 3852 3843 3850 3853 3887 CONECT 3853 3852 3888 CONECT 3854 3820 CONECT 3855 3820 CONECT 3856 3821 CONECT 3857 3821 CONECT 3858 3822 CONECT 3859 3822 CONECT 3860 3823 CONECT 3861 3823 CONECT 3862 3827 CONECT 3863 3828 CONECT 3864 3828 CONECT 3865 3829 CONECT 3866 3829 CONECT 3867 3830 CONECT 3868 3830 CONECT 3869 3831 CONECT 3870 3831 CONECT 3871 3832 CONECT 3872 3832 CONECT 3873 3833 CONECT 3874 3837 CONECT 3875 3838 CONECT 3876 3840 CONECT 3877 3841 CONECT 3878 3843 CONECT 3879 3845 CONECT 3880 3846 CONECT 3881 3846 CONECT 3882 3847 CONECT 3883 3848 CONECT 3884 3849 CONECT 3885 3850 CONECT 3886 3851 CONECT 3887 3852 CONECT 3888 3853 MASTER 365 0 8 4 32 0 23 6 4642 4 304 40 END