HEADER HYDROLASE 20-MAR-15 4YWF TITLE ABYA5 COMPND MOL_ID: 1; COMPND 2 MOLECULE: ABYA5; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES; COMPND 5 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: VERRUCOSISPORA MARIS; SOURCE 3 ORGANISM_TAXID: 1003110; SOURCE 4 GENE: ABYA5, VAB18032_16440; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008 KEYWDS DEACETYLASE, ELIMINATION, HYDROLASE, SPIROTETRONATE EXPDTA X-RAY DIFFRACTION AUTHOR M.J.BYRNE,P.R.RACE REVDAT 3 19-JUN-19 4YWF 1 JRNL REVDAT 2 30-AUG-17 4YWF 1 REMARK REVDAT 1 29-JUN-16 4YWF 0 JRNL AUTH N.R.LEES,L.C.HAN,M.J.BYRNE,J.A.DAVIES,A.E.PARNELL, JRNL AUTH 2 P.E.J.MORELAND,J.E.M.STACH,M.W.VAN DER KAMP,C.L.WILLIS, JRNL AUTH 3 P.R.RACE JRNL TITL AN ESTERASE-LIKE LYASE CATALYZES ACETATE ELIMINATION IN JRNL TITL 2 SPIROTETRONATE/SPIROTETRAMATE BIOSYNTHESIS. JRNL REF ANGEW.CHEM.INT.ED.ENGL. V. 58 2305 2019 JRNL REFN ESSN 1521-3773 JRNL PMID 30664319 JRNL DOI 10.1002/ANIE.201812105 REMARK 2 REMARK 2 RESOLUTION. 2.00 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0049 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.00 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 36.39 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 3 NUMBER OF REFLECTIONS : 23787 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.219 REMARK 3 R VALUE (WORKING SET) : 0.218 REMARK 3 FREE R VALUE : 0.236 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 1275 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.00 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.05 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1758 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.95 REMARK 3 BIN R VALUE (WORKING SET) : 0.2780 REMARK 3 BIN FREE R VALUE SET COUNT : 102 REMARK 3 BIN FREE R VALUE : 0.2590 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2493 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 50 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 31.24 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 2.44000 REMARK 3 B22 (A**2) : 1.08000 REMARK 3 B33 (A**2) : -3.54000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.76000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.192 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.158 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.121 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 4.395 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.938 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.928 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2556 ; 0.017 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): 2381 ; 0.001 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 3501 ; 1.817 ; 1.958 REMARK 3 BOND ANGLES OTHERS (DEGREES): 5433 ; 2.062 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 331 ; 6.355 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 106 ;32.266 ;22.075 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 333 ;15.648 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 25 ;24.472 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 400 ; 0.099 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2933 ; 0.009 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 592 ; 0.007 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1330 ; 2.419 ; 3.044 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 1329 ; 2.412 ; 3.043 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 1659 ; 3.253 ; 4.555 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 1660 ; 3.255 ; 4.556 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1226 ; 3.086 ; 3.312 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 1227 ; 3.084 ; 3.312 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 1843 ; 4.267 ; 4.863 REMARK 3 LONG RANGE B REFINED ATOMS (A**2): 2880 ; 5.913 ;25.427 REMARK 3 LONG RANGE B OTHER ATOMS (A**2): 2867 ; 5.912 ;25.361 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 4YWF COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 20-MAR-15. REMARK 100 THE DEPOSITION ID IS D_1000208197. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 21-MAY-14 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : NULL REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : DIAMOND REMARK 200 BEAMLINE : I03 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97957 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : IMOSFLM REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 25075 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.000 REMARK 200 RESOLUTION RANGE LOW (A) : 36.390 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 5.500 REMARK 200 R MERGE (I) : 0.06500 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 3.4000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.29000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: PHENIX REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 46.65 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.31 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.02M MAGNESIUM CHLORIDE, 0.1M HEPES, REMARK 280 22% W/V POLYACRYLIC ACID 5100 SODIUM SALT, PH 7.5, VAPOR REMARK 280 DIFFUSION, SITTING DROP, TEMPERATURE 291K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 46.04000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 43.59000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 46.04000 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 43.59000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 0 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 13870 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: 0.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MSE A -19 REMARK 465 ALA A -18 REMARK 465 HIS A -17 REMARK 465 HIS A -16 REMARK 465 HIS A -15 REMARK 465 HIS A -14 REMARK 465 HIS A -13 REMARK 465 HIS A -12 REMARK 465 SER A -11 REMARK 465 SER A -10 REMARK 465 GLY A -9 REMARK 465 LEU A -8 REMARK 465 GLU A -7 REMARK 465 VAL A -6 REMARK 465 LEU A -5 REMARK 465 VAL A 12 REMARK 465 LEU A 13 REMARK 465 ALA A 14 REMARK 465 HIS A 15 REMARK 465 VAL A 16 REMARK 465 SER A 17 REMARK 465 ALA A 18 REMARK 465 GLN A 19 REMARK 465 ASN A 20 REMARK 465 ALA A 21 REMARK 465 SER A 22 REMARK 465 ALA A 23 REMARK 465 ASP A 24 REMARK 465 GLY A 25 REMARK 465 VAL A 26 REMARK 465 LEU A 27 REMARK 465 ALA A 28 REMARK 465 ARG A 29 REMARK 465 ALA A 348 REMARK 465 GLN A 349 REMARK 465 VAL A 350 REMARK 465 GLU A 351 REMARK 465 GLY A 352 REMARK 465 GLY A 353 REMARK 465 ARG A 354 REMARK 465 ALA A 355 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 VAL A 4 CG1 CG2 REMARK 470 GLN A 9 CG CD OE1 NE2 REMARK 470 ARG A 38 CG CD NE CZ NH1 NH2 REMARK 470 ARG A 46 CG CD NE CZ NH1 NH2 REMARK 470 GLU A 49 CG CD OE1 OE2 REMARK 470 GLN A 53 CG CD OE1 NE2 REMARK 470 ARG A 90 CG CD NE CZ NH1 NH2 REMARK 470 ARG A 93 CG CD NE CZ NH1 NH2 REMARK 470 ARG A 104 CG CD NE CZ NH1 NH2 REMARK 470 GLU A 121 CG CD OE1 OE2 REMARK 470 ARG A 122 CG CD NE CZ NH1 NH2 REMARK 470 LEU A 170 CG CD1 CD2 REMARK 470 GLU A 232 CG CD OE1 OE2 REMARK 470 ARG A 239 CG CD NE CZ NH1 NH2 REMARK 470 GLN A 268 CG CD OE1 NE2 REMARK 470 GLU A 286 CG CD OE1 OE2 REMARK 470 PHE A 318 CG CD1 CD2 CE1 CE2 CZ REMARK 470 ARG A 322 CG CD NE CZ NH1 NH2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 NH2 ARG A 304 OE1 GLU A 331 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 GLU A 185 CD GLU A 185 OE1 0.070 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 68 NE - CZ - NH1 ANGL. DEV. = 4.0 DEGREES REMARK 500 ARG A 68 NE - CZ - NH2 ANGL. DEV. = -4.0 DEGREES REMARK 500 ASP A 89 CB - CG - OD1 ANGL. DEV. = 6.6 DEGREES REMARK 500 ARG A 213 NE - CZ - NH1 ANGL. DEV. = 4.5 DEGREES REMARK 500 ARG A 213 NE - CZ - NH2 ANGL. DEV. = -3.6 DEGREES REMARK 500 ARG A 215 NE - CZ - NH2 ANGL. DEV. = 3.1 DEGREES REMARK 500 ARG A 297 NE - CZ - NH1 ANGL. DEV. = 4.8 DEGREES REMARK 500 ARG A 297 NE - CZ - NH2 ANGL. DEV. = -6.0 DEGREES REMARK 500 ARG A 304 NE - CZ - NH1 ANGL. DEV. = 4.0 DEGREES REMARK 500 ARG A 304 NE - CZ - NH2 ANGL. DEV. = -5.0 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 33 41.70 -109.69 REMARK 500 SER A 118 131.95 -170.14 REMARK 500 THR A 156 -156.78 -133.95 REMARK 500 SER A 198 -136.60 52.66 REMARK 500 VAL A 224 -64.16 -133.07 REMARK 500 ALA A 225 -60.09 -138.58 REMARK 500 THR A 251 -157.47 -129.33 REMARK 500 SER A 314 62.72 37.67 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 PHE A 151 ALA A 152 149.46 REMARK 500 REMARK 500 REMARK: NULL DBREF 4YWF A 0 355 UNP F4F7F5 F4F7F5_VERMA 1 355 SEQADV 4YWF MSE A -19 UNP F4F7F5 INITIATING METHIONINE SEQADV 4YWF ALA A -18 UNP F4F7F5 EXPRESSION TAG SEQADV 4YWF HIS A -17 UNP F4F7F5 EXPRESSION TAG SEQADV 4YWF HIS A -16 UNP F4F7F5 EXPRESSION TAG SEQADV 4YWF HIS A -15 UNP F4F7F5 EXPRESSION TAG SEQADV 4YWF HIS A -14 UNP F4F7F5 EXPRESSION TAG SEQADV 4YWF HIS A -13 UNP F4F7F5 EXPRESSION TAG SEQADV 4YWF HIS A -12 UNP F4F7F5 EXPRESSION TAG SEQADV 4YWF SER A -11 UNP F4F7F5 EXPRESSION TAG SEQADV 4YWF SER A -10 UNP F4F7F5 EXPRESSION TAG SEQADV 4YWF GLY A -9 UNP F4F7F5 EXPRESSION TAG SEQADV 4YWF LEU A -8 UNP F4F7F5 EXPRESSION TAG SEQADV 4YWF GLU A -7 UNP F4F7F5 EXPRESSION TAG SEQADV 4YWF VAL A -6 UNP F4F7F5 EXPRESSION TAG SEQADV 4YWF LEU A -5 UNP F4F7F5 EXPRESSION TAG SEQADV 4YWF PHE A -4 UNP F4F7F5 EXPRESSION TAG SEQADV 4YWF GLN A -3 UNP F4F7F5 EXPRESSION TAG SEQADV 4YWF GLY A -2 UNP F4F7F5 EXPRESSION TAG SEQADV 4YWF PRO A -1 UNP F4F7F5 EXPRESSION TAG SEQADV 4YWF MSE A 66 UNP F4F7F5 LEU 66 ENGINEERED MUTATION SEQADV 4YWF MSE A 158 UNP F4F7F5 LEU 158 ENGINEERED MUTATION SEQADV 4YWF MSE A 195 UNP F4F7F5 LEU 195 ENGINEERED MUTATION SEQADV 4YWF MSE A 295 UNP F4F7F5 LEU 295 ENGINEERED MUTATION SEQRES 1 A 374 MSE ALA HIS HIS HIS HIS HIS HIS SER SER GLY LEU GLU SEQRES 2 A 374 VAL LEU PHE GLN GLY PRO MSE SER ASN ASP VAL ALA GLU SEQRES 3 A 374 LEU LYS GLN TYR VAL LEU ALA HIS VAL SER ALA GLN ASN SEQRES 4 A 374 ALA SER ALA ASP GLY VAL LEU ALA ARG ILE ASP ASP ASP SEQRES 5 A 374 GLY ASP GLY PRO ARG SER TRP THR THR GLN TRP ILE ARG SEQRES 6 A 374 ALA GLY GLU GLU ARG GLU GLN ALA GLY ASP LEU LEU ALA SEQRES 7 A 374 ALA THR THR PHE TYR ASN MSE ALA ARG PHE PRO PHE VAL SEQRES 8 A 374 ASP SER PRO GLY ARG ALA GLU ALA LEU ARG ARG CYS VAL SEQRES 9 A 374 ALA VAL PHE ASP ARG TRP ARG ARG THR VAL PRO GLY ILE SEQRES 10 A 374 GLU ARG LEU GLU LEU ARG LEU PRO GLY GLY VAL VAL ARG SEQRES 11 A 374 ALA TRP ALA ALA GLY LEU SER THR THR GLU ARG ARG PRO SEQRES 12 A 374 VAL LEU LEU MSE THR GLY GLY ILE VAL SER ILE LYS GLU SEQRES 13 A 374 GLN TRP ALA PRO ILE LEU PRO GLU LEU ALA ARG TYR GLY SEQRES 14 A 374 PHE ALA ALA VAL VAL THR GLU MSE PRO GLY VAL GLY GLU SEQRES 15 A 374 ASN GLU LEU ARG TYR ASP LEU ASP SER ALA ALA LEU PHE SEQRES 16 A 374 GLY VAL LEU LEU ASP ALA VAL ALA GLU ARG ALA ASP THR SEQRES 17 A 374 SER ARG ALA TYR ALA MSE ALA LEU SER PHE SER GLY HIS SEQRES 18 A 374 LEU ALA LEU ARG ALA ALA PRO SER GLU PRO ARG LEU ARG SEQRES 19 A 374 GLY ILE VAL THR ALA GLY ALA PRO VAL ALA ALA PHE PHE SEQRES 20 A 374 THR ASP LYS GLU TRP GLN ALA ALA VAL PRO ARG VAL THR SEQRES 21 A 374 VAL ASP THR LEU ALA ARG LEU THR GLN THR THR PRO ALA SEQRES 22 A 374 THR VAL PHE ASP HIS VAL ARG ASN TRP ALA LEU THR PRO SEQRES 23 A 374 GLN ASP LEU ALA GLY VAL ARG ILE PRO VAL ALA TYR VAL SEQRES 24 A 374 ALA SER GLY ARG ASP GLU ILE ILE PRO PRO ALA ASP PRO SEQRES 25 A 374 ALA MSE LEU ARG THR HIS VAL ARG ASP PHE ARG THR ILE SEQRES 26 A 374 THR HIS ASP ASP VAL HIS GLY SER PRO ALA HIS PHE PRO SEQRES 27 A 374 HIS THR ARG LEU TRP THR LEU ALA GLN VAL LEU GLU MSE SEQRES 28 A 374 SER GLY ALA ASP PRO ARG HIS ARG ALA ALA VAL ASP GLY SEQRES 29 A 374 ALA LEU ALA GLN VAL GLU GLY GLY ARG ALA MODRES 4YWF MSE A 0 MET MODIFIED RESIDUE MODRES 4YWF MSE A 128 MET MODIFIED RESIDUE MODRES 4YWF MSE A 332 MET MODIFIED RESIDUE HET MSE A 0 8 HET MSE A 66 8 HET MSE A 128 8 HET MSE A 158 8 HET MSE A 195 8 HET MSE A 295 8 HET MSE A 332 8 HETNAM MSE SELENOMETHIONINE FORMUL 1 MSE 7(C5 H11 N O2 SE) FORMUL 2 HOH *50(H2 O) HELIX 1 AA1 ASP A 3 TYR A 10 1 8 HELIX 2 AA2 SER A 39 ALA A 54 1 16 HELIX 3 AA3 ASP A 56 PHE A 69 1 14 HELIX 4 AA4 SER A 74 ARG A 93 1 20 HELIX 5 AA5 ILE A 135 PRO A 141 5 7 HELIX 6 AA6 ILE A 142 TYR A 149 1 8 HELIX 7 AA7 ASP A 171 ALA A 173 5 3 HELIX 8 AA8 ALA A 174 VAL A 183 1 10 HELIX 9 AA9 SER A 198 ALA A 208 1 11 HELIX 10 AB1 PRO A 209 GLU A 211 5 3 HELIX 11 AB2 ALA A 225 ASP A 230 1 6 HELIX 12 AB3 ASP A 230 VAL A 237 1 8 HELIX 13 AB4 PRO A 238 GLN A 250 1 13 HELIX 14 AB5 THR A 255 VAL A 260 1 6 HELIX 15 AB6 ARG A 261 ALA A 264 5 4 HELIX 16 AB7 THR A 266 GLY A 272 1 7 HELIX 17 AB8 PRO A 290 VAL A 300 1 11 HELIX 18 AB9 SER A 314 ALA A 316 5 3 HELIX 19 AC1 HIS A 317 SER A 333 1 17 HELIX 20 AC2 ASP A 336 LEU A 347 1 12 SHEET 1 AA1 8 GLU A 99 LEU A 105 0 SHEET 2 AA1 8 GLY A 108 ALA A 115 -1 O ALA A 114 N GLU A 99 SHEET 3 AA1 8 ALA A 152 VAL A 155 -1 O VAL A 155 N TRP A 113 SHEET 4 AA1 8 PRO A 124 THR A 129 1 N MSE A 128 O VAL A 154 SHEET 5 AA1 8 ASP A 188 ALA A 196 1 O MSE A 195 N LEU A 127 SHEET 6 AA1 8 LEU A 214 ALA A 220 1 O ARG A 215 N ALA A 192 SHEET 7 AA1 8 VAL A 277 ARG A 284 1 O ALA A 278 N THR A 219 SHEET 8 AA1 8 PHE A 303 VAL A 311 1 O HIS A 308 N GLY A 283 LINK C PRO A -1 N MSE A 0 1555 1555 1.33 LINK C MSE A 0 N SER A 1 1555 1555 1.34 LINK C ASN A 65 N MSE A 66 1555 1555 1.34 LINK C MSE A 66 N ALA A 67 1555 1555 1.32 LINK C LEU A 127 N MSE A 128 1555 1555 1.33 LINK C MSE A 128 N THR A 129 1555 1555 1.33 LINK C GLU A 157 N MSE A 158 1555 1555 1.33 LINK C MSE A 158 N PRO A 159 1555 1555 1.37 LINK C ALA A 194 N MSE A 195 1555 1555 1.34 LINK C MSE A 195 N ALA A 196 1555 1555 1.33 LINK C ALA A 294 N MSE A 295 1555 1555 1.33 LINK C MSE A 295 N LEU A 296 1555 1555 1.32 LINK C GLU A 331 N MSE A 332 1555 1555 1.35 LINK C MSE A 332 N SER A 333 1555 1555 1.31 CISPEP 1 PHE A 69 PRO A 70 0 4.75 CRYST1 92.080 87.180 47.910 90.00 101.63 90.00 C 1 2 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.010860 0.000000 0.002235 0.00000 SCALE2 0.000000 0.011470 0.000000 0.00000 SCALE3 0.000000 0.000000 0.021310 0.00000