HEADER TRANSFERASE 20-MAR-15 4YWR TITLE STRUCTURE OF A PUTATIVE PHOSPHOMETHYLPYRIMIDINE KINASE FROM TITLE 2 ACINETOBACTER BAUMANNII IN NON-COVALENT COMPLEX WITH PYRIDOXAL TITLE 3 PHOSPHATE COMPND MOL_ID: 1; COMPND 2 MOLECULE: PUTATIVE HYDROXYMETHYLPYRIMIDINE COMPND 3 KINASE/PHOSPHOMETHYLPYRIMIDINE KINASE; COMPND 4 CHAIN: A; COMPND 5 FRAGMENT: UNP RESIDUES 2-255; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ACINETOBACTER BAUMANNII; SOURCE 3 ORGANISM_TAXID: 1116234; SOURCE 4 STRAIN: AB5075; SOURCE 5 GENE: A591_A3049; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: ACBAC.00867.A.B1 KEYWDS PUTATIVE PHOSPHOMETHYLPYRIMIDINE KINASE, PYRIDOXAL PHOSHPATE, KEYWDS 2 STRUCTURAL GENOMICS, SEATTLE STRUCTURAL GENOMICS CENTER FOR KEYWDS 3 INFECTIOUS DISEASE, SSGCID, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR SEATTLE STRUCTURAL GENOMICS CENTER FOR INFECTIOUS DISEASE (SSGCID) REVDAT 2 27-SEP-23 4YWR 1 REMARK REVDAT 1 02-MAR-16 4YWR 0 JRNL AUTH J.ABENDROTH,D.M.DRANOW,D.D.LORIMER,T.E.EDWARDS JRNL TITL STRUCTURE OF A PUTATIVE PHOSPHOMETHYLPYRIMIDINE KINASE FROM JRNL TITL 2 ACINETOBACTER BAUMANNII IN NON-COVALENT COMPLEX WITH JRNL TITL 3 PYRIDOXAL PHOSPHATE. JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.65 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX DEV_1980 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.65 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 46.18 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 3 NUMBER OF REFLECTIONS : 34354 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.158 REMARK 3 R VALUE (WORKING SET) : 0.157 REMARK 3 FREE R VALUE : 0.176 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.250 REMARK 3 FREE R VALUE TEST SET COUNT : 1802 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 46.1992 - 3.8790 1.00 2661 137 0.1410 0.1409 REMARK 3 2 3.8790 - 3.0791 1.00 2557 133 0.1418 0.1511 REMARK 3 3 3.0791 - 2.6899 1.00 2543 128 0.1629 0.1959 REMARK 3 4 2.6899 - 2.4440 1.00 2531 129 0.1527 0.1629 REMARK 3 5 2.4440 - 2.2688 0.99 2494 128 0.1490 0.1567 REMARK 3 6 2.2688 - 2.1351 0.99 2475 133 0.1622 0.1881 REMARK 3 7 2.1351 - 2.0281 1.00 2476 153 0.1539 0.1743 REMARK 3 8 2.0281 - 1.9399 1.00 2477 149 0.1634 0.2198 REMARK 3 9 1.9399 - 1.8652 0.99 2433 154 0.1921 0.2084 REMARK 3 10 1.8652 - 1.8008 1.00 2505 129 0.1852 0.2205 REMARK 3 11 1.8008 - 1.7445 1.00 2449 151 0.1729 0.2177 REMARK 3 12 1.7445 - 1.6946 1.00 2506 142 0.1782 0.2085 REMARK 3 13 1.6946 - 1.6500 0.99 2445 136 0.1950 0.2261 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.140 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 16.180 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 14.07 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 21.19 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.006 1757 REMARK 3 ANGLE : 0.838 2414 REMARK 3 CHIRALITY : 0.056 293 REMARK 3 PLANARITY : 0.005 311 REMARK 3 DIHEDRAL : 15.620 1061 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 9 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 10 THROUGH 25 ) REMARK 3 ORIGIN FOR THE GROUP (A): 2.0818 35.3173 27.6579 REMARK 3 T TENSOR REMARK 3 T11: 0.1130 T22: 0.0657 REMARK 3 T33: 0.0690 T12: 0.0049 REMARK 3 T13: 0.0196 T23: 0.0044 REMARK 3 L TENSOR REMARK 3 L11: 6.7101 L22: 1.4626 REMARK 3 L33: 2.9846 L12: 0.8147 REMARK 3 L13: 2.7011 L23: 1.2044 REMARK 3 S TENSOR REMARK 3 S11: 0.0098 S12: 0.1357 S13: 0.1484 REMARK 3 S21: -0.1039 S22: 0.0907 S23: -0.0193 REMARK 3 S31: -0.1739 S32: 0.0588 S33: -0.1301 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 26 THROUGH 39 ) REMARK 3 ORIGIN FOR THE GROUP (A): 1.1194 41.5146 27.3794 REMARK 3 T TENSOR REMARK 3 T11: 0.1489 T22: 0.0829 REMARK 3 T33: 0.0959 T12: 0.0003 REMARK 3 T13: 0.0156 T23: 0.0003 REMARK 3 L TENSOR REMARK 3 L11: 5.2031 L22: 8.4599 REMARK 3 L33: 3.8940 L12: 6.6088 REMARK 3 L13: 3.3812 L23: 3.9768 REMARK 3 S TENSOR REMARK 3 S11: -0.1579 S12: 0.0160 S13: 0.3183 REMARK 3 S21: -0.3268 S22: 0.0199 S23: 0.1233 REMARK 3 S31: -0.3894 S32: -0.0326 S33: 0.1173 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 40 THROUGH 52 ) REMARK 3 ORIGIN FOR THE GROUP (A): -2.0358 29.6476 25.9550 REMARK 3 T TENSOR REMARK 3 T11: 0.0764 T22: 0.0654 REMARK 3 T33: 0.0372 T12: -0.0023 REMARK 3 T13: -0.0032 T23: -0.0016 REMARK 3 L TENSOR REMARK 3 L11: 4.7430 L22: 2.2750 REMARK 3 L33: 2.1634 L12: 1.5090 REMARK 3 L13: -0.0338 L23: 0.1884 REMARK 3 S TENSOR REMARK 3 S11: 0.0114 S12: 0.0148 S13: -0.0156 REMARK 3 S21: -0.0282 S22: 0.0256 S23: 0.0336 REMARK 3 S31: -0.0354 S32: -0.0861 S33: -0.0418 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 53 THROUGH 74 ) REMARK 3 ORIGIN FOR THE GROUP (A): -0.3173 23.8013 27.6478 REMARK 3 T TENSOR REMARK 3 T11: 0.1192 T22: 0.0612 REMARK 3 T33: 0.0601 T12: -0.0032 REMARK 3 T13: -0.0229 T23: -0.0019 REMARK 3 L TENSOR REMARK 3 L11: 6.1589 L22: 1.7715 REMARK 3 L33: 2.4954 L12: 0.6195 REMARK 3 L13: -0.4855 L23: 0.0270 REMARK 3 S TENSOR REMARK 3 S11: 0.1000 S12: -0.1152 S13: -0.3201 REMARK 3 S21: 0.0274 S22: -0.0590 S23: 0.0483 REMARK 3 S31: 0.1824 S32: -0.0798 S33: -0.0142 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 75 THROUGH 125 ) REMARK 3 ORIGIN FOR THE GROUP (A): 5.2379 29.4550 36.4014 REMARK 3 T TENSOR REMARK 3 T11: 0.0892 T22: 0.0782 REMARK 3 T33: 0.0662 T12: 0.0015 REMARK 3 T13: -0.0110 T23: 0.0090 REMARK 3 L TENSOR REMARK 3 L11: 3.4314 L22: 1.5947 REMARK 3 L33: 2.0348 L12: 1.0467 REMARK 3 L13: 0.2257 L23: 0.4968 REMARK 3 S TENSOR REMARK 3 S11: 0.0399 S12: -0.0887 S13: 0.0074 REMARK 3 S21: 0.0588 S22: 0.0178 S23: 0.0038 REMARK 3 S31: 0.1156 S32: 0.0400 S33: -0.0456 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 126 THROUGH 158 ) REMARK 3 ORIGIN FOR THE GROUP (A): -2.6145 30.2923 46.8402 REMARK 3 T TENSOR REMARK 3 T11: 0.0948 T22: 0.0847 REMARK 3 T33: 0.0542 T12: -0.0251 REMARK 3 T13: -0.0115 T23: 0.0041 REMARK 3 L TENSOR REMARK 3 L11: 3.0040 L22: 2.1002 REMARK 3 L33: 2.4169 L12: 0.5413 REMARK 3 L13: -1.2617 L23: -0.2622 REMARK 3 S TENSOR REMARK 3 S11: 0.0199 S12: -0.0642 S13: -0.0130 REMARK 3 S21: 0.0372 S22: 0.0136 S23: 0.0774 REMARK 3 S31: 0.1196 S32: -0.0435 S33: -0.0305 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 159 THROUGH 185 ) REMARK 3 ORIGIN FOR THE GROUP (A): -4.5014 39.4492 51.0071 REMARK 3 T TENSOR REMARK 3 T11: 0.1508 T22: 0.1215 REMARK 3 T33: 0.1751 T12: -0.0420 REMARK 3 T13: 0.0324 T23: -0.0357 REMARK 3 L TENSOR REMARK 3 L11: 4.2825 L22: 6.4869 REMARK 3 L33: 6.8800 L12: -1.7535 REMARK 3 L13: 2.0746 L23: -2.9012 REMARK 3 S TENSOR REMARK 3 S11: 0.0300 S12: -0.3140 S13: 0.3775 REMARK 3 S21: 0.3156 S22: 0.1120 S23: 0.4234 REMARK 3 S31: -0.3892 S32: -0.3327 S33: -0.0970 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 186 THROUGH 204 ) REMARK 3 ORIGIN FOR THE GROUP (A): -2.4032 46.9873 48.7549 REMARK 3 T TENSOR REMARK 3 T11: 0.1904 T22: 0.1499 REMARK 3 T33: 0.2778 T12: -0.0242 REMARK 3 T13: 0.0438 T23: -0.0346 REMARK 3 L TENSOR REMARK 3 L11: 3.1282 L22: 6.5163 REMARK 3 L33: 4.6696 L12: -1.0660 REMARK 3 L13: 0.9417 L23: 0.9165 REMARK 3 S TENSOR REMARK 3 S11: 0.0586 S12: -0.5335 S13: 0.7457 REMARK 3 S21: 0.1991 S22: -0.1256 S23: 0.4475 REMARK 3 S31: -0.3105 S32: -0.4759 S33: 0.2051 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 205 THROUGH 246 ) REMARK 3 ORIGIN FOR THE GROUP (A): 2.3013 48.3704 37.5421 REMARK 3 T TENSOR REMARK 3 T11: 0.1633 T22: 0.0815 REMARK 3 T33: 0.1506 T12: -0.0265 REMARK 3 T13: 0.0231 T23: -0.0419 REMARK 3 L TENSOR REMARK 3 L11: 2.4123 L22: 5.4473 REMARK 3 L33: 4.8583 L12: -0.8638 REMARK 3 L13: -0.6251 L23: 1.1015 REMARK 3 S TENSOR REMARK 3 S11: 0.0053 S12: -0.0391 S13: 0.2979 REMARK 3 S21: -0.0650 S22: -0.0382 S23: 0.3167 REMARK 3 S31: -0.2307 S32: -0.2355 S33: 0.0142 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4YWR COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 23-MAR-15. REMARK 100 THE DEPOSITION ID IS D_1000208207. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 12-MAR-15 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : RIGAKU FR-E+ SUPERBRIGHT REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.5418 REMARK 200 MONOCHROMATOR : RIGAKU VARIMAZ REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : RIGAKU SATURN 944+ REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 37353 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.600 REMARK 200 RESOLUTION RANGE LOW (A) : NULL REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.1 REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : 0.04400 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 45.0000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.60 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.64 REMARK 200 COMPLETENESS FOR SHELL (%) : 78.8 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.48700 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.230 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: NULL REMARK 200 STARTING MODEL: PDB ENTRY 4YL5 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 52.00 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.55 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: MICROLYTICS MGSC1 SCREEN, C8: 25% PEG REMARK 280 4000, 200MM AMMONIUM CITRATE, 100MM NA CITRATE/HCL, PH 5.6; REMARK 280 ACBAC.00867.A.B1.PW37632 AT 22 MG/ML; CRYSTAL SOAKED FOR 2H IN REMARK 280 RESERVOIR SOLUTION WITH 5MM PYRIDOXAL PHOSPHATE, TRAY 261062, REMARK 280 PUCK HML12-2; CRYO: 20% EG, PH 6.5, VAPOR DIFFUSION, SITTING REMARK 280 DROP, TEMPERATURE 290K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 2 2 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -X,Y,-Z+1/2 REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 44.44000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 44.44000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 29.41000 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 54.05000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 29.41000 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 54.05000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 44.44000 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 29.41000 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 54.05000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 44.44000 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 29.41000 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 54.05000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 496 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 624 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 ALA A 2 REMARK 465 HIS A 3 REMARK 465 HIS A 4 REMARK 465 HIS A 5 REMARK 465 HIS A 6 REMARK 465 HIS A 7 REMARK 465 HIS A 8 REMARK 465 VAL A 9 REMARK 465 LEU A 206 REMARK 465 GLU A 207 REMARK 465 GLY A 208 REMARK 465 GLU A 209 REMARK 465 TYR A 210 REMARK 465 HIS A 211 REMARK 465 GLY A 212 REMARK 465 SER A 213 REMARK 465 GLY A 214 REMARK 465 LYS A 247 REMARK 465 ASN A 248 REMARK 465 ALA A 249 REMARK 465 GLU A 250 REMARK 465 THR A 251 REMARK 465 PRO A 252 REMARK 465 VAL A 253 REMARK 465 LEU A 254 REMARK 465 ASN A 255 REMARK 465 GLY A 256 REMARK 465 GLN A 257 REMARK 465 LYS A 258 REMARK 465 ILE A 259 REMARK 465 PRO A 260 REMARK 465 LYS A 261 REMARK 465 ARG A 262 REMARK 465 PHE A 263 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 131 CG CD CE NZ REMARK 470 GLU A 168 CG CD OE1 OE2 REMARK 470 HIS A 180 CG ND1 CD2 CE1 NE2 REMARK 470 ILE A 187 CG1 CG2 CD1 REMARK 470 LYS A 188 CG CD CE NZ REMARK 470 ARG A 205 CG CD NE CZ NH1 NH2 REMARK 470 PHE A 243 CG CD1 CD2 CE1 CE2 CZ REMARK 470 LEU A 246 CG CD1 CD2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O SER A 200 O HOH A 401 2.07 REMARK 500 OE1 GLU A 239 O HOH A 402 2.09 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ALA A 47 144.68 -170.87 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 636 DISTANCE = 5.93 ANGSTROMS REMARK 525 HOH A 637 DISTANCE = 6.80 ANGSTROMS REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PLP A 300 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: SSGCID-ACBAC.00867.A RELATED DB: TARGETTRACK DBREF1 4YWR A 10 263 UNP A0A0A2TKW6_ACIBA DBREF2 4YWR A A0A0A2TKW6 2 255 SEQADV 4YWR MET A 1 UNP A0A0A2TKW EXPRESSION TAG SEQADV 4YWR ALA A 2 UNP A0A0A2TKW EXPRESSION TAG SEQADV 4YWR HIS A 3 UNP A0A0A2TKW EXPRESSION TAG SEQADV 4YWR HIS A 4 UNP A0A0A2TKW EXPRESSION TAG SEQADV 4YWR HIS A 5 UNP A0A0A2TKW EXPRESSION TAG SEQADV 4YWR HIS A 6 UNP A0A0A2TKW EXPRESSION TAG SEQADV 4YWR HIS A 7 UNP A0A0A2TKW EXPRESSION TAG SEQADV 4YWR HIS A 8 UNP A0A0A2TKW EXPRESSION TAG SEQADV 4YWR VAL A 9 UNP A0A0A2TKW EXPRESSION TAG SEQRES 1 A 263 MET ALA HIS HIS HIS HIS HIS HIS VAL ARG PRO THR VAL SEQRES 2 A 263 LEU CYS PHE SER GLY LEU ASP PRO SER GLY GLY ALA GLY SEQRES 3 A 263 LEU GLN ALA ASP ILE GLU ALA ILE GLY GLN SER GLY ALA SEQRES 4 A 263 HIS ALA ALA ILE ALA CYS THR ALA LEU THR ILE GLN ASN SEQRES 5 A 263 SER GLN GLN VAL PHE GLY PHE GLU ALA THR SER LYS GLU SEQRES 6 A 263 LEU LEU LEU ALA GLN ALA ASN ALA VAL VAL GLY ASP LEU SEQRES 7 A 263 PRO ILE LYS CYS VAL LYS SER GLY MET LEU GLY THR THR SEQRES 8 A 263 ASP ASN ILE ALA ALA LEU ALA GLU PHE LEU ARG ALA HIS SEQRES 9 A 263 PRO ASP TYR GLN TYR VAL LEU ASP PRO VAL LEU VAL ALA SEQRES 10 A 263 ASN SER GLY GLY SER LEU GLY ASP GLN ALA THR LEU VAL SEQRES 11 A 263 LYS ALA PHE VAL GLU LEU ILE PRO LEU ALA THR LEU ILE SEQRES 12 A 263 THR PRO ASN THR VAL GLU LEU ARG ALA LEU THR GLY VAL SEQRES 13 A 263 THR ASP LEU ASP GLN ALA THR GLN LYS LEU PHE GLU MET SEQRES 14 A 263 GLY ALA LYS ALA VAL LEU VAL LYS GLY GLY HIS GLU ASP SEQRES 15 A 263 THR PRO ASP PHE ILE LYS ASN SER LEU TYR ILE ASP GLY SEQRES 16 A 263 GLU LEU ALA ALA SER SER THR CYS PRO ARG LEU GLU GLY SEQRES 17 A 263 GLU TYR HIS GLY SER GLY CYS SER LEU ALA SER PHE ILE SEQRES 18 A 263 ALA GLY ARG LEU ALA LEU GLY ASP SER LEU LYS ILE ALA SEQRES 19 A 263 VAL GLN HIS ALA GLU THR TRP LEU PHE GLY VAL LEU LYS SEQRES 20 A 263 ASN ALA GLU THR PRO VAL LEU ASN GLY GLN LYS ILE PRO SEQRES 21 A 263 LYS ARG PHE HET PLP A 300 32 HETNAM PLP PYRIDOXAL-5'-PHOSPHATE HETSYN PLP VITAMIN B6 PHOSPHATE FORMUL 2 PLP C8 H10 N O6 P FORMUL 3 HOH *237(H2 O) HELIX 1 AA1 GLY A 26 GLY A 38 1 13 HELIX 2 AA2 SER A 63 VAL A 75 1 13 HELIX 3 AA3 THR A 90 HIS A 104 1 15 HELIX 4 AA4 ASP A 125 VAL A 134 1 10 HELIX 5 AA5 GLU A 135 ALA A 140 5 6 HELIX 6 AA6 ASN A 146 GLY A 155 1 10 HELIX 7 AA7 ASP A 158 MET A 169 1 12 HELIX 8 AA8 LEU A 217 LEU A 227 1 11 HELIX 9 AA9 SER A 230 LEU A 246 1 17 SHEET 1 AA1 6 GLN A 55 ALA A 61 0 SHEET 2 AA1 6 HIS A 40 ASN A 52 -1 N ILE A 50 O GLY A 58 SHEET 3 AA1 6 THR A 12 LEU A 19 1 N CYS A 15 O ALA A 44 SHEET 4 AA1 6 ILE A 80 SER A 85 1 O LYS A 84 N PHE A 16 SHEET 5 AA1 6 GLN A 108 LEU A 111 1 O VAL A 110 N VAL A 83 SHEET 6 AA1 6 LEU A 142 ILE A 143 1 O LEU A 142 N LEU A 111 SHEET 1 AA2 3 ALA A 173 LYS A 177 0 SHEET 2 AA2 3 PHE A 186 ILE A 193 -1 O TYR A 192 N VAL A 174 SHEET 3 AA2 3 GLU A 196 PRO A 204 -1 O SER A 201 N ASN A 189 SSBOND 1 CYS A 203 CYS A 215 1555 1555 2.03 SITE 1 AC1 13 ALA A 25 GLY A 26 GLN A 51 ASP A 112 SITE 2 AC1 13 ALA A 117 ASN A 118 LEU A 123 SER A 216 SITE 3 AC1 13 HOH A 412 HOH A 429 HOH A 452 HOH A 472 SITE 4 AC1 13 HOH A 474 CRYST1 58.820 108.100 88.880 90.00 90.00 90.00 C 2 2 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.017001 0.000000 0.000000 0.00000 SCALE2 0.000000 0.009251 0.000000 0.00000 SCALE3 0.000000 0.000000 0.011251 0.00000