HEADER PROTEIN TRANSPORT 23-MAR-15 4YXC TITLE COMPLEX OF FLIM(SPOA)::FLIN FUSION PROTEIN AND FLIH(APAR)::T4LYSOZYME TITLE 2 FUSION PROTEIN COMPND MOL_ID: 1; COMPND 2 MOLECULE: FLAGELLAR ASSEMBLY PROTEIN H,ENDOLYSIN; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: UNP RESIDUES 1-18; COMPND 5 SYNONYM: LYSIS PROTEIN,LYSOZYME,MURAMIDASE; COMPND 6 EC: 3.2.1.17; COMPND 7 ENGINEERED: YES; COMPND 8 MUTATION: YES; COMPND 9 MOL_ID: 2; COMPND 10 MOLECULE: FLAGELLAR MOTOR SWITCH PROTEIN FLIM,FLAGELLAR MOTOR SWITCH COMPND 11 PROTEIN FLIN; COMPND 12 CHAIN: B; COMPND 13 FRAGMENT: UNP RESIDUES 245-334,UNP RESIDUES 5-137; COMPND 14 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SALMONELLA ENTERICA SUBSP. ENTERICA SEROVAR SOURCE 3 ENTERITIDIS STR. SE30663, ENTEROBACTERIA PHAGE T4; SOURCE 4 ORGANISM_TAXID: 702978, 10665; SOURCE 5 GENE: FLIH, SEE30663_21114; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 MOL_ID: 2; SOURCE 9 ORGANISM_SCIENTIFIC: SALMONELLA TYPHIMURIUM (STRAIN LT2 / SGSC1412 / SOURCE 10 ATCC 700720); SOURCE 11 ORGANISM_TAXID: 99287; SOURCE 12 STRAIN: LT2 / SGSC1412 / ATCC 700720; SOURCE 13 GENE: FLIM, CHEC2, FLA AII, FLA QII, STM1976, FLIN, FLAN, MOTD, SOURCE 14 STM1977; SOURCE 15 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 16 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS TYPE III SECRETION SYSTEM, PROTEIN TRANSPORT EXPDTA X-RAY DIFFRACTION AUTHOR R.Q.NOTTI,C.E.STEBBINS REVDAT 3 27-SEP-23 4YXC 1 REMARK REVDAT 2 22-NOV-17 4YXC 1 SOURCE REMARK REVDAT 1 03-JUN-15 4YXC 0 JRNL AUTH R.Q.NOTTI,S.BHATTACHARYA,M.LILIC,C.E.STEBBINS JRNL TITL A COMMON ASSEMBLY MODULE IN INJECTISOME AND FLAGELLAR TYPE JRNL TITL 2 III SECRETION SORTING PLATFORMS. JRNL REF NAT COMMUN V. 6 7125 2015 JRNL REFN ESSN 2041-1723 JRNL PMID 25994170 JRNL DOI 10.1038/NCOMMS8125 REMARK 2 REMARK 2 RESOLUTION. 2.30 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.30 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 47.02 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 3 NUMBER OF REFLECTIONS : 18174 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.203 REMARK 3 R VALUE (WORKING SET) : 0.197 REMARK 3 FREE R VALUE : 0.262 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 10.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1818 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 47.0319 - 5.4056 0.98 1349 150 0.1978 0.2421 REMARK 3 2 5.4056 - 4.2915 1.00 1290 144 0.1530 0.2074 REMARK 3 3 4.2915 - 3.7493 1.00 1287 143 0.1656 0.2456 REMARK 3 4 3.7493 - 3.4066 1.00 1270 141 0.1896 0.2349 REMARK 3 5 3.4066 - 3.1625 1.00 1254 140 0.2186 0.3207 REMARK 3 6 3.1625 - 2.9761 1.00 1253 138 0.2287 0.2994 REMARK 3 7 2.9761 - 2.8270 1.00 1229 136 0.2333 0.3343 REMARK 3 8 2.8270 - 2.7040 1.00 1243 139 0.2252 0.2700 REMARK 3 9 2.7040 - 2.5999 1.00 1250 139 0.2290 0.2977 REMARK 3 10 2.5999 - 2.5102 1.00 1226 136 0.2257 0.3164 REMARK 3 11 2.5102 - 2.4317 1.00 1230 137 0.2505 0.3088 REMARK 3 12 2.4317 - 2.3622 1.00 1243 138 0.2630 0.3504 REMARK 3 13 2.3622 - 2.3000 1.00 1232 137 0.2751 0.3874 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.320 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 27.560 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 52.31 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 69.58 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.009 2713 REMARK 3 ANGLE : 1.150 3697 REMARK 3 CHIRALITY : 0.050 441 REMARK 3 PLANARITY : 0.006 478 REMARK 3 DIHEDRAL : 14.686 999 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 17 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 1 THROUGH 10 ) REMARK 3 ORIGIN FOR THE GROUP (A): 36.9091 48.0929 10.8935 REMARK 3 T TENSOR REMARK 3 T11: 0.8919 T22: 0.7023 REMARK 3 T33: 0.7259 T12: 0.2144 REMARK 3 T13: -0.0600 T23: -0.1061 REMARK 3 L TENSOR REMARK 3 L11: 3.1020 L22: 4.9179 REMARK 3 L33: 8.6507 L12: 3.6606 REMARK 3 L13: -4.3955 L23: -6.5256 REMARK 3 S TENSOR REMARK 3 S11: 0.7236 S12: 0.8253 S13: 1.8192 REMARK 3 S21: -0.2191 S22: 0.7039 S23: 1.3995 REMARK 3 S31: -0.3569 S32: -0.3526 S33: -1.3250 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 11 THROUGH 23 ) REMARK 3 ORIGIN FOR THE GROUP (A): 42.8762 31.2060 24.6036 REMARK 3 T TENSOR REMARK 3 T11: 0.9281 T22: 1.0337 REMARK 3 T33: 0.4815 T12: 0.3947 REMARK 3 T13: 0.0358 T23: -0.1488 REMARK 3 L TENSOR REMARK 3 L11: 4.7595 L22: 3.6259 REMARK 3 L33: 7.1029 L12: -0.9454 REMARK 3 L13: 1.9374 L23: -3.0352 REMARK 3 S TENSOR REMARK 3 S11: -0.5755 S12: 0.0380 S13: -0.5358 REMARK 3 S21: 0.5281 S22: -0.4088 S23: 0.3955 REMARK 3 S31: -1.6943 S32: 0.3827 S33: 0.4088 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 24 THROUGH 32 ) REMARK 3 ORIGIN FOR THE GROUP (A): 46.9550 15.3857 39.0936 REMARK 3 T TENSOR REMARK 3 T11: 0.4689 T22: 0.6019 REMARK 3 T33: 0.5870 T12: 0.0573 REMARK 3 T13: -0.0979 T23: 0.0030 REMARK 3 L TENSOR REMARK 3 L11: 6.5850 L22: 8.7261 REMARK 3 L33: 2.2920 L12: 0.4108 REMARK 3 L13: 1.0580 L23: -4.1451 REMARK 3 S TENSOR REMARK 3 S11: 0.4278 S12: 0.0385 S13: -1.0114 REMARK 3 S21: -0.2435 S22: -0.0671 S23: -0.0068 REMARK 3 S31: 0.6616 S32: 0.9717 S33: -0.3301 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 33 THROUGH 45 ) REMARK 3 ORIGIN FOR THE GROUP (A): 35.3376 11.0251 46.4463 REMARK 3 T TENSOR REMARK 3 T11: 0.7213 T22: 0.5489 REMARK 3 T33: 0.6965 T12: -0.1210 REMARK 3 T13: 0.1015 T23: 0.1349 REMARK 3 L TENSOR REMARK 3 L11: 3.4614 L22: 7.6311 REMARK 3 L33: 2.6341 L12: -1.8270 REMARK 3 L13: -2.5386 L23: 0.8032 REMARK 3 S TENSOR REMARK 3 S11: -0.2192 S12: -0.1027 S13: -0.0944 REMARK 3 S21: 2.3189 S22: 0.2205 S23: 1.5638 REMARK 3 S31: 0.7884 S32: -0.4029 S33: 0.2830 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 46 THROUGH 80 ) REMARK 3 ORIGIN FOR THE GROUP (A): 27.9686 11.5099 39.9305 REMARK 3 T TENSOR REMARK 3 T11: 0.4145 T22: 0.8435 REMARK 3 T33: 0.9746 T12: -0.1525 REMARK 3 T13: -0.0430 T23: -0.0806 REMARK 3 L TENSOR REMARK 3 L11: 3.4817 L22: 5.4981 REMARK 3 L33: 7.6865 L12: 3.0089 REMARK 3 L13: -0.8726 L23: -3.8864 REMARK 3 S TENSOR REMARK 3 S11: 0.7384 S12: -0.1757 S13: -0.5582 REMARK 3 S21: -0.2521 S22: -0.4772 S23: 1.5125 REMARK 3 S31: 0.2528 S32: -1.8786 S33: -0.0444 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 81 THROUGH 101 ) REMARK 3 ORIGIN FOR THE GROUP (A): 38.3604 18.8681 32.4340 REMARK 3 T TENSOR REMARK 3 T11: 0.5685 T22: 0.3603 REMARK 3 T33: 0.3991 T12: 0.0436 REMARK 3 T13: 0.0082 T23: 0.0071 REMARK 3 L TENSOR REMARK 3 L11: 4.9409 L22: 2.9759 REMARK 3 L33: 6.8899 L12: 3.4243 REMARK 3 L13: 1.7210 L23: -1.5330 REMARK 3 S TENSOR REMARK 3 S11: 0.3942 S12: 0.1621 S13: -0.4446 REMARK 3 S21: -1.0607 S22: -0.2548 S23: 0.6859 REMARK 3 S31: 1.0688 S32: 0.1515 S33: -0.2707 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 102 THROUGH 113 ) REMARK 3 ORIGIN FOR THE GROUP (A): 45.6040 35.1694 37.8683 REMARK 3 T TENSOR REMARK 3 T11: 0.7300 T22: 0.5136 REMARK 3 T33: 0.3911 T12: -0.1733 REMARK 3 T13: 0.0551 T23: -0.0468 REMARK 3 L TENSOR REMARK 3 L11: 2.2352 L22: 7.5706 REMARK 3 L33: 6.1247 L12: -3.4429 REMARK 3 L13: -2.3596 L23: 1.1803 REMARK 3 S TENSOR REMARK 3 S11: 1.0909 S12: -0.3497 S13: -0.6864 REMARK 3 S21: 0.3074 S22: -1.0020 S23: -0.0328 REMARK 3 S31: -1.5245 S32: 0.5107 S33: 0.0600 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 114 THROUGH 163 ) REMARK 3 ORIGIN FOR THE GROUP (A): 47.0502 29.6787 47.8250 REMARK 3 T TENSOR REMARK 3 T11: 0.8889 T22: 0.8385 REMARK 3 T33: 0.4753 T12: -0.4535 REMARK 3 T13: -0.0684 T23: -0.0498 REMARK 3 L TENSOR REMARK 3 L11: 7.4313 L22: 2.9420 REMARK 3 L33: 1.9428 L12: -3.4733 REMARK 3 L13: 2.2015 L23: 0.0998 REMARK 3 S TENSOR REMARK 3 S11: 0.3955 S12: -1.0138 S13: 0.4141 REMARK 3 S21: 1.2315 S22: -0.2992 S23: -0.5842 REMARK 3 S31: -0.8928 S32: 0.6771 S33: -0.1849 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 164 THROUGH 184 ) REMARK 3 ORIGIN FOR THE GROUP (A): 54.0349 21.4791 46.6656 REMARK 3 T TENSOR REMARK 3 T11: 0.5582 T22: 0.8953 REMARK 3 T33: 0.6022 T12: -0.1926 REMARK 3 T13: -0.2088 T23: 0.1245 REMARK 3 L TENSOR REMARK 3 L11: 6.5831 L22: 6.6059 REMARK 3 L33: 5.7485 L12: 2.5231 REMARK 3 L13: -0.6025 L23: 0.5943 REMARK 3 S TENSOR REMARK 3 S11: 0.4564 S12: -0.6104 S13: -0.7017 REMARK 3 S21: 1.1308 S22: -0.6815 S23: -1.3290 REMARK 3 S31: 0.2964 S32: 0.7454 S33: 0.4505 REMARK 3 TLS GROUP : 10 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 17 THROUGH 51 ) REMARK 3 ORIGIN FOR THE GROUP (A): 38.5308 29.9974 6.4854 REMARK 3 T TENSOR REMARK 3 T11: 0.2897 T22: 0.3801 REMARK 3 T33: 0.3994 T12: 0.0100 REMARK 3 T13: 0.0931 T23: -0.0287 REMARK 3 L TENSOR REMARK 3 L11: 4.9367 L22: 5.2442 REMARK 3 L33: 5.5411 L12: -3.7827 REMARK 3 L13: 3.9508 L23: -2.4809 REMARK 3 S TENSOR REMARK 3 S11: -0.3698 S12: -0.5331 S13: -0.0392 REMARK 3 S21: 0.4173 S22: 0.3790 S23: 0.3345 REMARK 3 S31: -0.3091 S32: -0.5244 S33: -0.1220 REMARK 3 TLS GROUP : 11 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 52 THROUGH 90 ) REMARK 3 ORIGIN FOR THE GROUP (A): 48.8764 15.9554 16.1437 REMARK 3 T TENSOR REMARK 3 T11: 0.3040 T22: 0.3555 REMARK 3 T33: 0.2856 T12: 0.0287 REMARK 3 T13: 0.1097 T23: 0.0352 REMARK 3 L TENSOR REMARK 3 L11: 3.6185 L22: 4.9984 REMARK 3 L33: 5.3873 L12: 0.6208 REMARK 3 L13: 1.5305 L23: 0.0549 REMARK 3 S TENSOR REMARK 3 S11: -0.2504 S12: -0.2863 S13: -0.3127 REMARK 3 S21: 0.3819 S22: -0.0155 S23: 0.5645 REMARK 3 S31: 0.1237 S32: -0.2770 S33: 0.1692 REMARK 3 TLS GROUP : 12 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 91 THROUGH 150 ) REMARK 3 ORIGIN FOR THE GROUP (A): 44.1012 8.5492 -3.2829 REMARK 3 T TENSOR REMARK 3 T11: 0.6952 T22: 0.5898 REMARK 3 T33: 0.3168 T12: 0.1775 REMARK 3 T13: 0.2920 T23: 0.0834 REMARK 3 L TENSOR REMARK 3 L11: 2.5510 L22: 2.8846 REMARK 3 L33: 0.6396 L12: -1.2519 REMARK 3 L13: 1.5269 L23: -0.2357 REMARK 3 S TENSOR REMARK 3 S11: -0.4190 S12: -0.0198 S13: 0.2765 REMARK 3 S21: 0.5511 S22: -0.0518 S23: -0.8270 REMARK 3 S31: 0.1222 S32: 0.1883 S33: 0.6091 REMARK 3 TLS GROUP : 13 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 151 THROUGH 163 ) REMARK 3 ORIGIN FOR THE GROUP (A): 47.0651 26.4593 7.3579 REMARK 3 T TENSOR REMARK 3 T11: 0.3383 T22: 0.2720 REMARK 3 T33: 0.3691 T12: -0.0022 REMARK 3 T13: 0.0410 T23: -0.0167 REMARK 3 L TENSOR REMARK 3 L11: 5.9833 L22: 6.7632 REMARK 3 L33: 7.3171 L12: -1.5475 REMARK 3 L13: 4.6998 L23: -1.6661 REMARK 3 S TENSOR REMARK 3 S11: -0.0815 S12: 0.3546 S13: -0.4258 REMARK 3 S21: 0.3915 S22: -0.0618 S23: -0.8650 REMARK 3 S31: 0.1800 S32: 0.3710 S33: 0.2675 REMARK 3 TLS GROUP : 14 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 164 THROUGH 178 ) REMARK 3 ORIGIN FOR THE GROUP (A): 56.0391 15.3702 18.5321 REMARK 3 T TENSOR REMARK 3 T11: 0.5372 T22: 0.4662 REMARK 3 T33: 0.6376 T12: 0.0544 REMARK 3 T13: -0.0403 T23: 0.0621 REMARK 3 L TENSOR REMARK 3 L11: 9.7977 L22: 3.7971 REMARK 3 L33: 6.2741 L12: -5.4537 REMARK 3 L13: -1.2810 L23: 2.5959 REMARK 3 S TENSOR REMARK 3 S11: 0.1854 S12: -1.3128 S13: -0.7322 REMARK 3 S21: 0.3838 S22: -0.1043 S23: -1.1196 REMARK 3 S31: 0.3157 S32: 0.2211 S33: -0.2866 REMARK 3 TLS GROUP : 15 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 179 THROUGH 193 ) REMARK 3 ORIGIN FOR THE GROUP (A): 47.8413 32.5287 9.5735 REMARK 3 T TENSOR REMARK 3 T11: 0.4615 T22: 0.4130 REMARK 3 T33: 0.4114 T12: 0.0518 REMARK 3 T13: -0.0362 T23: -0.0764 REMARK 3 L TENSOR REMARK 3 L11: 7.4463 L22: 7.8452 REMARK 3 L33: 7.5169 L12: -3.5996 REMARK 3 L13: 4.2909 L23: -3.9601 REMARK 3 S TENSOR REMARK 3 S11: -1.1665 S12: -0.5454 S13: 0.4671 REMARK 3 S21: 0.8015 S22: 0.4437 S23: -1.0509 REMARK 3 S31: -1.4785 S32: 0.6127 S33: 0.5812 REMARK 3 TLS GROUP : 16 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 194 THROUGH 215 ) REMARK 3 ORIGIN FOR THE GROUP (A): 39.0028 36.8164 9.8784 REMARK 3 T TENSOR REMARK 3 T11: 0.6534 T22: 0.4413 REMARK 3 T33: 0.3951 T12: 0.2033 REMARK 3 T13: -0.1446 T23: -0.0425 REMARK 3 L TENSOR REMARK 3 L11: 10.0951 L22: 7.7782 REMARK 3 L33: 3.7641 L12: -0.4818 REMARK 3 L13: -1.5355 L23: 1.5513 REMARK 3 S TENSOR REMARK 3 S11: -0.8540 S12: -1.5298 S13: 0.3621 REMARK 3 S21: 1.0984 S22: 0.3388 S23: 0.0766 REMARK 3 S31: -0.3661 S32: 0.2175 S33: 0.4882 REMARK 3 TLS GROUP : 17 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 216 THROUGH 227 ) REMARK 3 ORIGIN FOR THE GROUP (A): 44.2812 34.1053 -7.9662 REMARK 3 T TENSOR REMARK 3 T11: 0.6190 T22: 0.7334 REMARK 3 T33: 0.6834 T12: -0.2682 REMARK 3 T13: 0.1762 T23: -0.0373 REMARK 3 L TENSOR REMARK 3 L11: 5.9790 L22: 1.7249 REMARK 3 L33: 7.8317 L12: 1.2058 REMARK 3 L13: 0.2030 L23: 1.2300 REMARK 3 S TENSOR REMARK 3 S11: -0.8588 S12: 2.2072 S13: -0.0609 REMARK 3 S21: -1.3997 S22: 1.1766 S23: -2.0844 REMARK 3 S31: -0.0323 S32: 2.1523 S33: 0.3953 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4YXC COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 23-MAR-15. REMARK 100 THE DEPOSITION ID IS D_1000208243. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 23-SEP-14 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : NSLS REMARK 200 BEAMLINE : X29A REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.075 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : NULL REMARK 200 DATA SCALING SOFTWARE : AIMLESS 0.2.7 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 18223 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.300 REMARK 200 RESOLUTION RANGE LOW (A) : 64.330 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 200 DATA REDUNDANCY : 12.90 REMARK 200 R MERGE (I) : 0.07000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 20.2000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.30 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.38 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.8 REMARK 200 DATA REDUNDANCY IN SHELL : 12.90 REMARK 200 R MERGE FOR SHELL (I) : 0.92300 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.600 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHENIX REMARK 200 STARTING MODEL: 4YXB AND 2LZM REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 42.91 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.15 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: FLIM(245-334)::FLIN(5-137) + FLIH(1 REMARK 280 -18)::T4 LYSOZYME WAS CONCENTRATED TO 17MG/ML AND CRYSTALLIZED REMARK 280 WITH 11% PEG400, 100MM SODIUM POTASSIUM PHOSPHATE PH=6.5. REMARK 280 CRYSTALS WERE CRYOPROTECTED WITH 40% PEG400, 200MM SODIUM REMARK 280 POTASSIUM PHOSPHATE PH=6.5., VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 21.60500 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 59.67500 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 38.18500 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 59.67500 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 21.60500 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 38.18500 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2020 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 19390 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -16.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ALA A 183 REMARK 465 ALA A 184 REMARK 465 ALA A 185 REMARK 465 GLY B 1 REMARK 465 PRO B 2 REMARK 465 VAL B 3 REMARK 465 ASP B 4 REMARK 465 ASN B 5 REMARK 465 TRP B 6 REMARK 465 ARG B 7 REMARK 465 ASP B 8 REMARK 465 ASN B 9 REMARK 465 LEU B 10 REMARK 465 VAL B 11 REMARK 465 ARG B 12 REMARK 465 GLN B 13 REMARK 465 VAL B 14 REMARK 465 GLN B 15 REMARK 465 HIS B 16 REMARK 465 GLU B 100 REMARK 465 ASN B 101 REMARK 465 THR B 102 REMARK 465 GLY B 103 REMARK 465 ALA B 104 REMARK 465 LEU B 105 REMARK 465 ASP B 106 REMARK 465 ASP B 107 REMARK 465 LEU B 108 REMARK 465 TRP B 109 REMARK 465 ALA B 110 REMARK 465 ASP B 111 REMARK 465 ALA B 112 REMARK 465 LEU B 113 REMARK 465 ASN B 114 REMARK 465 GLU B 115 REMARK 465 GLN B 116 REMARK 465 LYS B 117 REMARK 465 ALA B 118 REMARK 465 THR B 119 REMARK 465 THR B 120 REMARK 465 THR B 121 REMARK 465 LYS B 122 REMARK 465 SER B 123 REMARK 465 ALA B 124 REMARK 465 ALA B 125 REMARK 465 ASP B 126 REMARK 465 ALA B 127 REMARK 465 VAL B 128 REMARK 465 PHE B 129 REMARK 465 GLN B 130 REMARK 465 GLN B 131 REMARK 465 LEU B 132 REMARK 465 GLY B 133 REMARK 465 GLY B 134 REMARK 465 GLY B 135 REMARK 465 ASP B 136 REMARK 465 VAL B 137 REMARK 465 SER B 138 REMARK 465 GLY B 139 REMARK 465 ALA B 140 REMARK 465 MET B 141 REMARK 465 GLN B 142 REMARK 465 ASP B 143 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ASN A 7 CG OD1 ND2 REMARK 470 GLU A 8 CG CD OE1 OE2 REMARK 470 GLN A 12 CG CD OE1 NE2 REMARK 470 GLU A 26 CG CD OE1 OE2 REMARK 470 LYS A 40 CG CD CE NZ REMARK 470 LYS A 56 CG CD CE NZ REMARK 470 SER A 57 OG REMARK 470 ASN A 61 CG OD1 ND2 REMARK 470 LYS A 64 CG CD CE NZ REMARK 470 ASP A 68 CG OD1 OD2 REMARK 470 LYS A 69 CG CD CE NZ REMARK 470 ASN A 74 CG OD1 ND2 REMARK 470 ASN A 76 CG OD1 ND2 REMARK 470 ARG A 140 CG CD NE CZ NH1 NH2 REMARK 470 SER B 17 OG REMARK 470 GLU B 18 CG CD OE1 OE2 REMARK 470 ASN B 89 CG OD1 ND2 REMARK 470 LYS B 94 CG CD CE NZ REMARK 470 ILE B 144 CG1 CG2 CD1 REMARK 470 LYS B 153 CG CD CE NZ REMARK 470 LYS B 166 CG CD CE NZ REMARK 470 LYS B 207 CG CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O THR B 213 O HOH B 301 2.13 REMARK 500 O HOH A 226 O HOH A 235 2.15 REMARK 500 O PRO A 16 O HOH A 201 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 23 66.90 -104.55 REMARK 500 THR A 42 -3.06 -57.71 REMARK 500 ILE A 50 78.47 -106.72 REMARK 500 LEU A 54 -61.14 -94.81 REMARK 500 PRO A 58 145.98 -28.46 REMARK 500 LEU A 60 -40.00 -31.46 REMARK 500 THR A 75 -43.93 45.90 REMARK 500 ARG B 170 32.61 -99.79 REMARK 500 ALA B 205 -101.55 54.00 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 239 DISTANCE = 6.97 ANGSTROMS DBREF 4YXC A 5 22 UNP L5WUL9 L5WUL9_SALEN 1 18 DBREF 4YXC A 23 182 UNP P00720 ENLYS_BPT4 2 161 DBREF 4YXC B 5 94 UNP P26418 FLIM_SALTY 245 334 DBREF 4YXC B 95 227 UNP P26419 FLIN_SALTY 5 137 SEQADV 4YXC GLY A 1 UNP L5WUL9 EXPRESSION TAG SEQADV 4YXC PRO A 2 UNP L5WUL9 EXPRESSION TAG SEQADV 4YXC VAL A 3 UNP L5WUL9 EXPRESSION TAG SEQADV 4YXC ASP A 4 UNP L5WUL9 EXPRESSION TAG SEQADV 4YXC GLY A 33 UNP P00720 ARG 12 CONFLICT SEQADV 4YXC THR A 75 UNP P00720 CYS 54 ENGINEERED MUTATION SEQADV 4YXC ALA A 118 UNP P00720 CYS 97 ENGINEERED MUTATION SEQADV 4YXC ARG A 158 UNP P00720 ILE 137 CONFLICT SEQADV 4YXC ALA A 183 UNP P00720 EXPRESSION TAG SEQADV 4YXC ALA A 184 UNP P00720 EXPRESSION TAG SEQADV 4YXC ALA A 185 UNP P00720 EXPRESSION TAG SEQADV 4YXC GLY B 1 UNP P26418 EXPRESSION TAG SEQADV 4YXC PRO B 2 UNP P26418 EXPRESSION TAG SEQADV 4YXC VAL B 3 UNP P26418 EXPRESSION TAG SEQADV 4YXC ASP B 4 UNP P26418 EXPRESSION TAG SEQRES 1 A 185 GLY PRO VAL ASP MET SER ASN GLU LEU PRO TRP GLN VAL SEQRES 2 A 185 TRP THR PRO ASP ASP LEU ALA PRO PRO ASN ILE PHE GLU SEQRES 3 A 185 MET LEU ARG ILE ASP GLU GLY LEU ARG LEU LYS ILE TYR SEQRES 4 A 185 LYS ASP THR GLU GLY TYR TYR THR ILE GLY ILE GLY HIS SEQRES 5 A 185 LEU LEU THR LYS SER PRO SER LEU ASN ALA ALA LYS SER SEQRES 6 A 185 GLU LEU ASP LYS ALA ILE GLY ARG ASN THR ASN GLY VAL SEQRES 7 A 185 ILE THR LYS ASP GLU ALA GLU LYS LEU PHE ASN GLN ASP SEQRES 8 A 185 VAL ASP ALA ALA VAL ARG GLY ILE LEU ARG ASN ALA LYS SEQRES 9 A 185 LEU LYS PRO VAL TYR ASP SER LEU ASP ALA VAL ARG ARG SEQRES 10 A 185 ALA ALA LEU ILE ASN MET VAL PHE GLN MET GLY GLU THR SEQRES 11 A 185 GLY VAL ALA GLY PHE THR ASN SER LEU ARG MET LEU GLN SEQRES 12 A 185 GLN LYS ARG TRP ASP GLU ALA ALA VAL ASN LEU ALA LYS SEQRES 13 A 185 SER ARG TRP TYR ASN GLN THR PRO ASN ARG ALA LYS ARG SEQRES 14 A 185 VAL ILE THR THR PHE ARG THR GLY THR TRP ASP ALA TYR SEQRES 15 A 185 ALA ALA ALA SEQRES 1 B 227 GLY PRO VAL ASP ASN TRP ARG ASP ASN LEU VAL ARG GLN SEQRES 2 B 227 VAL GLN HIS SER GLU LEU GLU LEU VAL ALA ASN PHE ALA SEQRES 3 B 227 ASP ILE PRO LEU ARG LEU SER GLN ILE LEU LYS LEU LYS SEQRES 4 B 227 PRO GLY ASP VAL LEU PRO ILE GLU LYS PRO ASP ARG ILE SEQRES 5 B 227 ILE ALA HIS VAL ASP GLY VAL PRO VAL LEU THR SER GLN SEQRES 6 B 227 TYR GLY THR VAL ASN GLY GLN TYR ALA LEU ARG VAL GLU SEQRES 7 B 227 HIS LEU ILE ASN PRO ILE LEU ASN SER LEU ASN GLU GLU SEQRES 8 B 227 GLN PRO LYS ASN ASN PRO SER ASP GLU ASN THR GLY ALA SEQRES 9 B 227 LEU ASP ASP LEU TRP ALA ASP ALA LEU ASN GLU GLN LYS SEQRES 10 B 227 ALA THR THR THR LYS SER ALA ALA ASP ALA VAL PHE GLN SEQRES 11 B 227 GLN LEU GLY GLY GLY ASP VAL SER GLY ALA MET GLN ASP SEQRES 12 B 227 ILE ASP LEU ILE MET ASP ILE PRO VAL LYS LEU THR VAL SEQRES 13 B 227 GLU LEU GLY ARG THR ARG MET THR ILE LYS GLU LEU LEU SEQRES 14 B 227 ARG LEU THR GLN GLY SER VAL VAL ALA LEU ASP GLY LEU SEQRES 15 B 227 ALA GLY GLU PRO LEU ASP ILE LEU ILE ASN GLY TYR LEU SEQRES 16 B 227 ILE ALA GLN GLY GLU VAL VAL VAL VAL ALA ASP LYS TYR SEQRES 17 B 227 GLY VAL ARG ILE THR ASP ILE ILE THR PRO SER GLU ARG SEQRES 18 B 227 MET ARG ARG LEU SER ARG FORMUL 3 HOH *71(H2 O) HELIX 1 AA1 ASN A 23 GLY A 33 1 11 HELIX 2 AA2 SER A 59 GLY A 72 1 14 HELIX 3 AA3 THR A 80 ARG A 101 1 22 HELIX 4 AA4 LYS A 104 LEU A 112 1 9 HELIX 5 AA5 ASP A 113 ALA A 133 1 21 HELIX 6 AA6 PHE A 135 GLN A 144 1 10 HELIX 7 AA7 ARG A 146 ALA A 155 1 10 HELIX 8 AA8 SER A 157 THR A 163 1 7 HELIX 9 AA9 THR A 163 GLY A 177 1 15 HELIX 10 AB1 LEU B 32 LYS B 37 1 6 HELIX 11 AB2 THR B 164 ARG B 170 1 7 HELIX 12 AB3 THR B 217 ARG B 227 1 11 SHEET 1 AA1 4 GLN A 12 VAL A 13 0 SHEET 2 AA1 4 TYR B 194 VAL B 204 -1 O VAL B 203 N GLN A 12 SHEET 3 AA1 4 LYS B 207 ILE B 215 -1 O ARG B 211 N GLU B 200 SHEET 4 AA1 4 VAL B 43 ILE B 46 -1 N LEU B 44 O VAL B 210 SHEET 1 AA2 9 GLN A 12 VAL A 13 0 SHEET 2 AA2 9 TYR B 194 VAL B 204 -1 O VAL B 203 N GLN A 12 SHEET 3 AA2 9 LEU B 187 ILE B 191 -1 N ILE B 191 O TYR B 194 SHEET 4 AA2 9 PRO B 151 MET B 163 -1 N THR B 155 O LEU B 190 SHEET 5 AA2 9 LEU B 19 ARG B 31 -1 N LEU B 30 O VAL B 152 SHEET 6 AA2 9 ILE B 52 VAL B 56 -1 O HIS B 55 N VAL B 22 SHEET 7 AA2 9 VAL B 59 VAL B 69 -1 O LEU B 62 N ALA B 54 SHEET 8 AA2 9 GLN B 72 LEU B 80 -1 O ARG B 76 N GLN B 65 SHEET 9 AA2 9 VAL B 176 LEU B 182 -1 O VAL B 177 N LEU B 75 SHEET 1 AA3 3 ARG A 35 LYS A 40 0 SHEET 2 AA3 3 TYR A 46 GLY A 49 -1 O THR A 47 N TYR A 39 SHEET 3 AA3 3 HIS A 52 LEU A 53 -1 O HIS A 52 N ILE A 48 CISPEP 1 PRO A 22 ASN A 23 0 -14.81 CISPEP 2 PRO A 58 SER A 59 0 -6.54 CISPEP 3 SER B 17 GLU B 18 0 -2.81 CRYST1 43.210 76.370 119.350 90.00 90.00 90.00 P 21 21 21 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.023143 0.000000 0.000000 0.00000 SCALE2 0.000000 0.013094 0.000000 0.00000 SCALE3 0.000000 0.000000 0.008379 0.00000