HEADER ISOMERASE 23-MAR-15 4YXG TITLE F96Y MUTANT OF PLASMODIUM FALCIPARUM TRIOSEPHOSPHATE ISOMERASE COMPND MOL_ID: 1; COMPND 2 MOLECULE: TRIOSEPHOSPHATE ISOMERASE; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: TIM,TRIOSE-PHOSPHATE ISOMERASE; COMPND 5 EC: 5.3.1.1; COMPND 6 ENGINEERED: YES; COMPND 7 MUTATION: YES; COMPND 8 OTHER_DETAILS: MUTATION OF A163V PRESENT IN THE WILD TYPE TIM COMPND 9 CONSIDERED AS TEMPLATE SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: PLASMODIUM FALCIPARUM; SOURCE 3 ORGANISM_TAXID: 5833; SOURCE 4 GENE: TPI; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: AA200; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PTRC99A KEYWDS TIM BARRELS, BETA-ALPHA BARRELS, ISOMERASE, GLYCOLYSIS EXPDTA X-RAY DIFFRACTION AUTHOR V.PAREEK,P.BALARAM,M.R.N.MURTHY REVDAT 3 08-NOV-23 4YXG 1 REMARK REVDAT 2 20-APR-16 4YXG 1 JRNL REVDAT 1 03-FEB-16 4YXG 0 JRNL AUTH V.PAREEK,M.SAMANTA,N.V.JOSHI,H.BALARAM,M.R.N.MURTHY, JRNL AUTH 2 P.BALARAM JRNL TITL CONNECTING ACTIVE-SITE LOOP CONFORMATIONS AND CATALYSIS IN JRNL TITL 2 TRIOSEPHOSPHATE ISOMERASE: INSIGHTS FROM A RARE VARIATION AT JRNL TITL 3 RESIDUE 96 IN THE PLASMODIAL ENZYME JRNL REF CHEMBIOCHEM V. 17 620 2016 JRNL REFN ESSN 1439-7633 JRNL PMID 26762569 JRNL DOI 10.1002/CBIC.201500532 REMARK 2 REMARK 2 RESOLUTION. 1.90 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0049 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.90 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 35.51 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.5 REMARK 3 NUMBER OF REFLECTIONS : 27191 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.183 REMARK 3 R VALUE (WORKING SET) : 0.180 REMARK 3 FREE R VALUE : 0.224 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 1454 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.90 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.95 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1988 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 98.78 REMARK 3 BIN R VALUE (WORKING SET) : 0.2140 REMARK 3 BIN FREE R VALUE SET COUNT : 120 REMARK 3 BIN FREE R VALUE : 0.2430 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3613 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 32 REMARK 3 SOLVENT ATOMS : 170 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 17.05 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.01000 REMARK 3 B22 (A**2) : 0.00000 REMARK 3 B33 (A**2) : -0.01000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : -0.01000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.198 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.163 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.112 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 3.736 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.946 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.914 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3709 ; 0.005 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): 3446 ; 0.001 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 4995 ; 1.034 ; 1.947 REMARK 3 BOND ANGLES OTHERS (DEGREES): 7904 ; 0.736 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 475 ; 5.618 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 166 ;38.411 ;25.181 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 624 ;13.046 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 14 ;16.413 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 566 ; 0.061 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 4255 ; 0.003 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 842 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1900 ; 0.592 ; 1.755 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 1899 ; 0.592 ; 1.754 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2365 ; 1.024 ; 2.621 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 2366 ; 1.023 ; 2.621 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1809 ; 0.567 ; 1.788 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 1809 ; 0.567 ; 1.788 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 2622 ; 0.945 ; 2.649 REMARK 3 LONG RANGE B REFINED ATOMS (A**2): 4318 ; 2.244 ;14.059 REMARK 3 LONG RANGE B OTHER ATOMS (A**2): 4319 ; 2.244 ;14.063 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 4YXG COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 09-APR-15. REMARK 100 THE DEPOSITION ID IS D_1000208227. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 23-JUN-09 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.0 REMARK 200 NUMBER OF CRYSTALS USED : NULL REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : BRUKER AXS MICROSTAR REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.54179 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : MAR SCANNER 345 MM PLATE REMARK 200 INTENSITY-INTEGRATION SOFTWARE : IMOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 28683 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.900 REMARK 200 RESOLUTION RANGE LOW (A) : 36.200 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.0 REMARK 200 DATA REDUNDANCY : 3.000 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 15.0000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.90 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.00 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.0 REMARK 200 DATA REDUNDANCY IN SHELL : 3.00 REMARK 200 R MERGE FOR SHELL (I) : 0.22500 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 4.300 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 2VFH REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 63.00 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.60 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 16% PEG 1450, HEPES, 10MM CACL2, 0.5MM REMARK 280 DTT, 0.5MM NAN3, 0.5MM EDTA, PH 8.0, VAPOR DIFFUSION, HANGING REMARK 280 DROP, TEMPERATURE 294K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 35.16000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 4660 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 18590 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -4.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 ILE A 170 REMARK 465 GLY A 171 REMARK 465 THR A 172 REMARK 465 GLY A 173 REMARK 465 LYS A 174 REMARK 465 THR A 175 REMARK 465 MET B 1 REMARK 465 LEU B 153 REMARK 465 ILE B 154 REMARK 465 ASP B 155 REMARK 465 ASN B 156 REMARK 465 PHE B 157 REMARK 465 ASP B 158 REMARK 465 THR B 172 REMARK 465 GLY B 173 REMARK 465 LYS B 174 REMARK 465 THR B 175 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ALA A 2 N CA CB REMARK 470 LYS A 21 CG CD CE NZ REMARK 470 ASN A 29 ND2 REMARK 470 ASP A 31 CB CG OD1 OD2 REMARK 470 LYS A 36 CD CE NZ REMARK 470 GLN A 56 CD OE1 NE2 REMARK 470 TYR A 96 CE2 REMARK 470 GLN A 114 NE2 REMARK 470 LEU A 131 CB CG CD1 CD2 REMARK 470 GLU A 132 CG CD OE1 OE2 REMARK 470 GLU A 135 CB CG CD OE1 OE2 REMARK 470 GLN A 136 OE1 NE2 REMARK 470 LYS A 138 NZ REMARK 470 ILE A 140 CD1 REMARK 470 ILE A 143 CG2 REMARK 470 LYS A 148 CD CE NZ REMARK 470 PHE A 157 CE1 REMARK 470 LEU A 167 CD1 REMARK 470 ALA A 169 CA C O CB REMARK 470 ALA A 176 N CA CB REMARK 470 GLU A 179 OE1 REMARK 470 LEU A 183 CD1 CD2 REMARK 470 LYS A 186 CE NZ REMARK 470 GLU A 187 CD OE1 OE2 REMARK 470 LYS A 190 CD CE NZ REMARK 470 GLN A 203 CD OE1 NE2 REMARK 470 SER A 211 CB OG REMARK 470 GLN A 222 NE2 REMARK 470 LYS A 237 NZ REMARK 470 LYS A 245 CE NZ REMARK 470 ALA B 2 N CB REMARK 470 LYS B 36 CE NZ REMARK 470 LYS B 53 CG CD CE NZ REMARK 470 GLU B 81 CD OE1 OE2 REMARK 470 LYS B 84 CD CE NZ REMARK 470 ASN B 87 OD1 ND2 REMARK 470 HIS B 103 CD2 REMARK 470 ASP B 106 OD1 OD2 REMARK 470 GLU B 107 CG CD OE1 OE2 REMARK 470 ARG B 110 CG CD NE CZ NH1 NH2 REMARK 470 GLN B 114 CG CD OE1 NE2 REMARK 470 LYS B 118 CD CE NZ REMARK 470 ASN B 120 OD1 ND2 REMARK 470 GLN B 133 CG CD OE1 NE2 REMARK 470 ARG B 134 CB CG CD NE CZ NH1 NH2 REMARK 470 ASN B 137 CG OD1 ND2 REMARK 470 LYS B 138 CB CG CD CE NZ REMARK 470 THR B 139 CG2 REMARK 470 ILE B 140 CB CG1 CG2 CD1 REMARK 470 GLU B 141 CB CG CD OE1 OE2 REMARK 470 ILE B 143 CB CG1 CG2 CD1 REMARK 470 THR B 144 CB OG1 CG2 REMARK 470 LYS B 145 CB CG CD CE NZ REMARK 470 VAL B 147 CG1 REMARK 470 LYS B 148 N CA CB CG CD CE NZ REMARK 470 PHE B 150 CB CG CD1 CD2 CE1 CE2 CZ REMARK 470 VAL B 151 CG1 CG2 REMARK 470 ASN B 159 CB CG OD1 ND2 REMARK 470 VAL B 160 CG2 REMARK 470 TRP B 168 CH2 REMARK 470 ALA B 169 C O REMARK 470 ILE B 170 N REMARK 470 ALA B 176 N CA CB REMARK 470 LYS B 186 CE NZ REMARK 470 LYS B 190 CE NZ REMARK 470 LYS B 199 CG CD CE NZ REMARK 470 GLN B 200 OE1 REMARK 470 GLN B 203 CD OE1 NE2 REMARK 470 GLY B 209 O REMARK 470 GLN B 222 CD OE1 NE2 REMARK 470 LYS B 237 CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 NH2 ARG B 189 O ILE B 204 2.01 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 OE1 GLU A 107 NZ LYS B 245 2445 1.97 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LYS A 12 -144.03 52.24 REMARK 500 ASP A 155 -87.30 -94.97 REMARK 500 SER A 211 74.75 46.12 REMARK 500 LYS B 12 -144.64 57.55 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 302 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 303 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO B 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO B 302 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO B 303 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO B 304 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO B 305 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4YWI RELATED DB: PDB REMARK 900 RELATED ID: 2VFD RELATED DB: PDB REMARK 900 RELATED ID: 2VFE RELATED DB: PDB REMARK 900 RELATED ID: 2VFF RELATED DB: PDB REMARK 900 RELATED ID: 2VFG RELATED DB: PDB REMARK 900 RELATED ID: 2VFH RELATED DB: PDB REMARK 900 RELATED ID: 4Z0J RELATED DB: PDB REMARK 900 RELATED ID: 4Z0S RELATED DB: PDB DBREF 4YXG A 1 248 UNP Q07412 TPIS_PLAFA 1 248 DBREF 4YXG B 1 248 UNP Q07412 TPIS_PLAFA 1 248 SEQADV 4YXG TYR A 96 UNP Q07412 PHE 96 ENGINEERED MUTATION SEQADV 4YXG VAL A 163 UNP Q07412 ALA 163 ENGINEERED MUTATION SEQADV 4YXG TYR B 96 UNP Q07412 PHE 96 ENGINEERED MUTATION SEQADV 4YXG VAL B 163 UNP Q07412 ALA 163 ENGINEERED MUTATION SEQRES 1 A 248 MET ALA ARG LYS TYR PHE VAL ALA ALA ASN TRP LYS CYS SEQRES 2 A 248 ASN GLY THR LEU GLU SER ILE LYS SER LEU THR ASN SER SEQRES 3 A 248 PHE ASN ASN LEU ASP PHE ASP PRO SER LYS LEU ASP VAL SEQRES 4 A 248 VAL VAL PHE PRO VAL SER VAL HIS TYR ASP HIS THR ARG SEQRES 5 A 248 LYS LEU LEU GLN SER LYS PHE SER THR GLY ILE GLN ASN SEQRES 6 A 248 VAL SER LYS PHE GLY ASN GLY SER TYR THR GLY GLU VAL SEQRES 7 A 248 SER ALA GLU ILE ALA LYS ASP LEU ASN ILE GLU TYR VAL SEQRES 8 A 248 ILE ILE GLY HIS TYR GLU ARG ARG LYS TYR PHE HIS GLU SEQRES 9 A 248 THR ASP GLU ASP VAL ARG GLU LYS LEU GLN ALA SER LEU SEQRES 10 A 248 LYS ASN ASN LEU LYS ALA VAL VAL CYS PHE GLY GLU SER SEQRES 11 A 248 LEU GLU GLN ARG GLU GLN ASN LYS THR ILE GLU VAL ILE SEQRES 12 A 248 THR LYS GLN VAL LYS ALA PHE VAL ASP LEU ILE ASP ASN SEQRES 13 A 248 PHE ASP ASN VAL ILE LEU VAL TYR GLU PRO LEU TRP ALA SEQRES 14 A 248 ILE GLY THR GLY LYS THR ALA THR PRO GLU GLN ALA GLN SEQRES 15 A 248 LEU VAL HIS LYS GLU ILE ARG LYS ILE VAL LYS ASP THR SEQRES 16 A 248 CYS GLY GLU LYS GLN ALA ASN GLN ILE ARG ILE LEU TYR SEQRES 17 A 248 GLY GLY SER VAL ASN THR GLU ASN CYS SER SER LEU ILE SEQRES 18 A 248 GLN GLN GLU ASP ILE ASP GLY PHE LEU VAL GLY ASN ALA SEQRES 19 A 248 SER LEU LYS GLU SER PHE VAL ASP ILE ILE LYS SER ALA SEQRES 20 A 248 MET SEQRES 1 B 248 MET ALA ARG LYS TYR PHE VAL ALA ALA ASN TRP LYS CYS SEQRES 2 B 248 ASN GLY THR LEU GLU SER ILE LYS SER LEU THR ASN SER SEQRES 3 B 248 PHE ASN ASN LEU ASP PHE ASP PRO SER LYS LEU ASP VAL SEQRES 4 B 248 VAL VAL PHE PRO VAL SER VAL HIS TYR ASP HIS THR ARG SEQRES 5 B 248 LYS LEU LEU GLN SER LYS PHE SER THR GLY ILE GLN ASN SEQRES 6 B 248 VAL SER LYS PHE GLY ASN GLY SER TYR THR GLY GLU VAL SEQRES 7 B 248 SER ALA GLU ILE ALA LYS ASP LEU ASN ILE GLU TYR VAL SEQRES 8 B 248 ILE ILE GLY HIS TYR GLU ARG ARG LYS TYR PHE HIS GLU SEQRES 9 B 248 THR ASP GLU ASP VAL ARG GLU LYS LEU GLN ALA SER LEU SEQRES 10 B 248 LYS ASN ASN LEU LYS ALA VAL VAL CYS PHE GLY GLU SER SEQRES 11 B 248 LEU GLU GLN ARG GLU GLN ASN LYS THR ILE GLU VAL ILE SEQRES 12 B 248 THR LYS GLN VAL LYS ALA PHE VAL ASP LEU ILE ASP ASN SEQRES 13 B 248 PHE ASP ASN VAL ILE LEU VAL TYR GLU PRO LEU TRP ALA SEQRES 14 B 248 ILE GLY THR GLY LYS THR ALA THR PRO GLU GLN ALA GLN SEQRES 15 B 248 LEU VAL HIS LYS GLU ILE ARG LYS ILE VAL LYS ASP THR SEQRES 16 B 248 CYS GLY GLU LYS GLN ALA ASN GLN ILE ARG ILE LEU TYR SEQRES 17 B 248 GLY GLY SER VAL ASN THR GLU ASN CYS SER SER LEU ILE SEQRES 18 B 248 GLN GLN GLU ASP ILE ASP GLY PHE LEU VAL GLY ASN ALA SEQRES 19 B 248 SER LEU LYS GLU SER PHE VAL ASP ILE ILE LYS SER ALA SEQRES 20 B 248 MET HET EDO A 301 4 HET EDO A 302 4 HET EDO A 303 4 HET EDO B 301 4 HET EDO B 302 4 HET EDO B 303 4 HET EDO B 304 4 HET EDO B 305 4 HETNAM EDO 1,2-ETHANEDIOL HETSYN EDO ETHYLENE GLYCOL FORMUL 3 EDO 8(C2 H6 O2) FORMUL 11 HOH *170(H2 O) HELIX 1 AA1 THR A 16 ASN A 29 1 14 HELIX 2 AA2 VAL A 44 VAL A 46 5 3 HELIX 3 AA3 HIS A 47 LEU A 55 1 9 HELIX 4 AA4 SER A 79 LEU A 86 1 8 HELIX 5 AA5 HIS A 95 PHE A 102 1 8 HELIX 6 AA6 THR A 105 ASN A 119 1 15 HELIX 7 AA7 SER A 130 GLN A 136 1 7 HELIX 8 AA8 LYS A 138 ALA A 149 1 12 HELIX 9 AA9 PHE A 150 ILE A 154 5 5 HELIX 10 AB1 THR A 177 ILE A 204 1 28 HELIX 11 AB2 ASN A 216 GLN A 222 1 7 HELIX 12 AB3 GLY A 232 GLU A 238 5 7 HELIX 13 AB4 SER A 239 ALA A 247 1 9 HELIX 14 AB5 THR B 16 LEU B 30 1 15 HELIX 15 AB6 VAL B 44 VAL B 46 5 3 HELIX 16 AB7 HIS B 47 LEU B 55 1 9 HELIX 17 AB8 SER B 79 LEU B 86 1 8 HELIX 18 AB9 HIS B 95 PHE B 102 1 8 HELIX 19 AC1 THR B 105 ASN B 119 1 15 HELIX 20 AC2 SER B 130 GLN B 136 1 7 HELIX 21 AC3 LYS B 138 VAL B 147 1 10 HELIX 22 AC4 ALA B 149 VAL B 151 1 3 HELIX 23 AC5 THR B 177 GLY B 197 1 21 HELIX 24 AC6 GLY B 197 ASN B 202 1 6 HELIX 25 AC7 ASN B 216 GLN B 222 1 7 HELIX 26 AC8 GLY B 232 GLU B 238 5 7 HELIX 27 AC9 SER B 239 ALA B 247 1 9 SHEET 1 AA1 9 TYR A 5 ASN A 10 0 SHEET 2 AA1 9 LEU A 37 PHE A 42 1 O PHE A 42 N ALA A 9 SHEET 3 AA1 9 SER A 60 ILE A 63 1 O SER A 60 N VAL A 39 SHEET 4 AA1 9 TYR A 90 ILE A 93 1 O ILE A 92 N ILE A 63 SHEET 5 AA1 9 LYS A 122 PHE A 127 1 O CYS A 126 N ILE A 93 SHEET 6 AA1 9 VAL A 160 TYR A 164 1 O ILE A 161 N ALA A 123 SHEET 7 AA1 9 ILE A 206 TYR A 208 1 O LEU A 207 N LEU A 162 SHEET 8 AA1 9 GLY A 228 VAL A 231 1 O GLY A 228 N TYR A 208 SHEET 9 AA1 9 TYR A 5 ASN A 10 1 N ASN A 10 O VAL A 231 SHEET 1 AA2 9 TYR B 5 ASN B 10 0 SHEET 2 AA2 9 LEU B 37 PHE B 42 1 O VAL B 40 N ALA B 9 SHEET 3 AA2 9 SER B 60 ILE B 63 1 O SER B 60 N VAL B 39 SHEET 4 AA2 9 TYR B 90 ILE B 93 1 O ILE B 92 N ILE B 63 SHEET 5 AA2 9 LYS B 122 PHE B 127 1 O CYS B 126 N ILE B 93 SHEET 6 AA2 9 VAL B 160 TYR B 164 1 O ILE B 161 N ALA B 123 SHEET 7 AA2 9 ILE B 206 TYR B 208 1 O LEU B 207 N LEU B 162 SHEET 8 AA2 9 GLY B 228 VAL B 231 1 O GLY B 228 N TYR B 208 SHEET 9 AA2 9 TYR B 5 ASN B 10 1 N ASN B 10 O VAL B 231 SITE 1 AC1 7 ASN A 65 VAL A 78 HOH A 405 HOH A 421 SITE 2 AC1 7 HOH A 440 GLY B 76 HOH B 425 SITE 1 AC2 7 ASN A 10 LYS A 12 HIS A 95 GLY A 209 SITE 2 AC2 7 LEU A 230 GLY A 232 HOH A 420 SITE 1 AC3 4 LYS A 12 SER A 211 ASN A 233 HOH A 412 SITE 1 AC4 7 ASN B 10 LYS B 12 HIS B 95 LEU B 230 SITE 2 AC4 7 GLY B 232 EDO B 305 HOH B 435 SITE 1 AC5 2 ASN B 159 VAL B 160 SITE 1 AC6 6 TYR B 96 SER B 130 LEU B 131 LEU B 167 SITE 2 AC6 6 ILE B 170 HOH B 406 SITE 1 AC7 3 LEU B 117 VAL B 151 ASP B 152 SITE 1 AC8 3 LYS B 12 ASN B 233 EDO B 301 CRYST1 37.000 70.320 72.580 90.00 101.90 90.00 P 1 21 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.027027 0.000000 0.005695 0.00000 SCALE2 0.000000 0.014221 0.000000 0.00000 SCALE3 0.000000 0.000000 0.014081 0.00000