HEADER IMMUNE SYSTEM 23-MAR-15 4YXL TITLE CRYSTAL STRUCTURE OF SYRIAN HAMSTER PRION PROTEIN COMPLEXED WITH POM1 TITLE 2 FAB COMPND MOL_ID: 1; COMPND 2 MOLECULE: MAJOR PRION PROTEIN; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: PRP,PRP27-30,PRP33-35C; COMPND 5 ENGINEERED: YES; COMPND 6 MOL_ID: 2; COMPND 7 MOLECULE: POM1 FAB HEAVY CHAIN; COMPND 8 CHAIN: H; COMPND 9 ENGINEERED: YES; COMPND 10 MOL_ID: 3; COMPND 11 MOLECULE: POM1 FAB LIGHT CHAIN; COMPND 12 CHAIN: L; COMPND 13 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MESOCRICETUS AURATUS; SOURCE 3 ORGANISM_COMMON: GOLDEN HAMSTER; SOURCE 4 ORGANISM_TAXID: 10036; SOURCE 5 GENE: PRNP, PRP; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 MOL_ID: 2; SOURCE 9 ORGANISM_SCIENTIFIC: MUS MUSCULUS; SOURCE 10 ORGANISM_TAXID: 10090; SOURCE 11 EXPRESSION_SYSTEM: MUS MUSCULUS; SOURCE 12 EXPRESSION_SYSTEM_TAXID: 10090; SOURCE 13 MOL_ID: 3; SOURCE 14 ORGANISM_SCIENTIFIC: MUS MUSCULUS; SOURCE 15 ORGANISM_TAXID: 10090; SOURCE 16 EXPRESSION_SYSTEM: MUS MUSCULUS; SOURCE 17 EXPRESSION_SYSTEM_TAXID: 10090 KEYWDS PRION, ANTIBODY, IMMUNE SYSTEM COMPLEX, IMMUNE SYSTEM EXPDTA X-RAY DIFFRACTION AUTHOR P.K.BARAL,M.SWAYAMPAKULA,M.N.G.JAMES REVDAT 4 09-OCT-24 4YXL 1 REMARK REVDAT 3 27-SEP-23 4YXL 1 JRNL REMARK LINK REVDAT 2 14-OCT-15 4YXL 1 JRNL REVDAT 1 23-SEP-15 4YXL 0 JRNL AUTH P.K.BARAL,M.SWAYAMPAKULA,A.AGUZZI,M.N.JAMES JRNL TITL X-RAY STRUCTURAL AND MOLECULAR DYNAMICAL STUDIES OF THE JRNL TITL 2 GLOBULAR DOMAINS OF COW, DEER, ELK AND SYRIAN HAMSTER PRION JRNL TITL 3 PROTEINS. JRNL REF J.STRUCT.BIOL. V. 192 37 2015 JRNL REFN ESSN 1095-8657 JRNL PMID 26320075 JRNL DOI 10.1016/J.JSB.2015.08.014 REMARK 2 REMARK 2 RESOLUTION. 2.60 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.9_1692 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.60 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 35.24 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.350 REMARK 3 COMPLETENESS FOR RANGE (%) : 96.5 REMARK 3 NUMBER OF REFLECTIONS : 19692 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.265 REMARK 3 R VALUE (WORKING SET) : 0.262 REMARK 3 FREE R VALUE : 0.310 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.140 REMARK 3 FREE R VALUE TEST SET COUNT : 1012 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 35.2446 - 4.9777 0.99 2780 163 0.2453 0.3061 REMARK 3 2 4.9777 - 3.9527 0.99 2731 141 0.2376 0.2538 REMARK 3 3 3.9527 - 3.4535 0.99 2772 133 0.2575 0.3304 REMARK 3 4 3.4535 - 3.1380 0.98 2715 146 0.2853 0.3257 REMARK 3 5 3.1380 - 2.9132 0.98 2687 139 0.3042 0.3786 REMARK 3 6 2.9132 - 2.7415 0.98 2703 163 0.3424 0.3947 REMARK 3 7 2.7415 - 2.6042 0.84 2292 127 0.3523 0.3544 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.320 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 38.230 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.013 4251 REMARK 3 ANGLE : 1.972 5773 REMARK 3 CHIRALITY : 0.088 632 REMARK 3 PLANARITY : 0.012 745 REMARK 3 DIHEDRAL : 14.985 1531 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4YXL COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 23-MAR-15. REMARK 100 THE DEPOSITION ID IS D_1000208250. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 30-MAY-11 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : NULL REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRL REMARK 200 BEAMLINE : BL9-1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97947 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 325 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 19709 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.600 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 97.4 REMARK 200 DATA REDUNDANCY : 4.000 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.08000 REMARK 200 FOR THE DATA SET : 15.4600 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.60 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.69 REMARK 200 COMPLETENESS FOR SHELL (%) : 87.5 REMARK 200 DATA REDUNDANCY IN SHELL : 3.70 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.440 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: 4H88, 4DGI REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 56.36 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.82 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 25% PEG3350, 0.1 M BIS-TRIS, 0.2 M REMARK 280 LITHIUM SULPHATE, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 295K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 41.95800 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 52.98450 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 41.95800 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 52.98450 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 0 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 6750 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: 0.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3410 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 20910 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -32.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: H, L REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 67 REMARK 465 GLY A 68 REMARK 465 SER A 69 REMARK 465 SER A 70 REMARK 465 HIS A 71 REMARK 465 HIS A 72 REMARK 465 HIS A 73 REMARK 465 HIS A 74 REMARK 465 HIS A 75 REMARK 465 HIS A 76 REMARK 465 SER A 77 REMARK 465 SER A 78 REMARK 465 GLY A 79 REMARK 465 LEU A 80 REMARK 465 VAL A 81 REMARK 465 PRO A 82 REMARK 465 ARG A 83 REMARK 465 GLY A 84 REMARK 465 SER A 85 REMARK 465 HIS A 86 REMARK 465 MET A 87 REMARK 465 LEU A 88 REMARK 465 GLU A 89 REMARK 465 GLY A 90 REMARK 465 GLN A 91 REMARK 465 GLY A 92 REMARK 465 GLY A 93 REMARK 465 GLY A 94 REMARK 465 THR A 95 REMARK 465 HIS A 96 REMARK 465 ASN A 97 REMARK 465 GLN A 98 REMARK 465 TRP A 99 REMARK 465 ASN A 100 REMARK 465 LYS A 101 REMARK 465 PRO A 102 REMARK 465 SER A 103 REMARK 465 LYS A 104 REMARK 465 PRO A 105 REMARK 465 LYS A 106 REMARK 465 THR A 107 REMARK 465 ASN A 108 REMARK 465 MET A 109 REMARK 465 LYS A 110 REMARK 465 HIS A 111 REMARK 465 MET A 112 REMARK 465 ALA A 113 REMARK 465 GLY A 114 REMARK 465 ALA A 115 REMARK 465 ALA A 116 REMARK 465 ALA A 117 REMARK 465 ALA A 118 REMARK 465 GLY A 119 REMARK 465 ALA A 120 REMARK 465 VAL A 121 REMARK 465 VAL A 122 REMARK 465 TYR A 226 REMARK 465 ASP A 227 REMARK 465 GLY A 228 REMARK 465 ARG A 229 REMARK 465 ARG A 230 REMARK 465 SER A 231 REMARK 465 SER A 232 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 314 O HOH L 401 3455 2.03 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 GLY H 134 N - CA - C ANGL. DEV. = 15.8 DEGREES REMARK 500 ASN H 138 CB - CA - C ANGL. DEV. = 12.1 DEGREES REMARK 500 LEU H 182 CA - CB - CG ANGL. DEV. = 15.9 DEGREES REMARK 500 CYS H 200 CA - CB - SG ANGL. DEV. = 7.6 DEGREES REMARK 500 LEU L 4 CA - CB - CG ANGL. DEV. = 15.1 DEGREES REMARK 500 LEU L 136 CB - CG - CD2 ANGL. DEV. = -10.8 DEGREES REMARK 500 PRO L 141 C - N - CA ANGL. DEV. = 16.9 DEGREES REMARK 500 PRO L 141 C - N - CD ANGL. DEV. = -15.6 DEGREES REMARK 500 ASN L 157 N - CA - CB ANGL. DEV. = 12.2 DEGREES REMARK 500 VAL L 159 N - CA - C ANGL. DEV. = -19.4 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LEU A 125 -12.05 -145.35 REMARK 500 GLN A 223 24.77 -63.71 REMARK 500 ALA A 224 56.37 -65.92 REMARK 500 SER H 7 141.17 92.59 REMARK 500 THR H 137 -156.29 -99.02 REMARK 500 SER H 139 -5.68 58.08 REMARK 500 SER H 165 19.89 -145.73 REMARK 500 ALA L 51 -43.20 69.57 REMARK 500 SER L 52 -0.05 -146.27 REMARK 500 ILE L 58 130.66 64.03 REMARK 500 ASN L 76 -165.52 -61.86 REMARK 500 SER L 77 102.85 -21.76 REMARK 500 ALA L 84 173.17 178.82 REMARK 500 LYS L 142 -81.34 -61.68 REMARK 500 ARG L 188 -78.48 -23.94 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 ASN L 210 0.08 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA L 301 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 SER H 191 O REMARK 620 2 SER H 195 OG 85.4 REMARK 620 3 GLU L 79 OE1 45.4 130.4 REMARK 620 4 GLU L 79 OE2 46.7 132.0 2.8 REMARK 620 N 1 2 3 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue NA L 301 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4YX2 RELATED DB: PDB REMARK 900 RELATED ID: 4YXH RELATED DB: PDB REMARK 900 RELATED ID: 4YXL RELATED DB: PDB DBREF 4YXL A 90 232 UNP P04273 PRIO_MESAU 90 232 DBREF 4YXL H 1 218 PDB 4YXL 4YXL 1 218 DBREF 4YXL L 1 213 PDB 4YXL 4YXL 1 213 SEQADV 4YXL MET A 67 UNP P04273 EXPRESSION TAG SEQADV 4YXL GLY A 68 UNP P04273 EXPRESSION TAG SEQADV 4YXL SER A 69 UNP P04273 EXPRESSION TAG SEQADV 4YXL SER A 70 UNP P04273 EXPRESSION TAG SEQADV 4YXL HIS A 71 UNP P04273 EXPRESSION TAG SEQADV 4YXL HIS A 72 UNP P04273 EXPRESSION TAG SEQADV 4YXL HIS A 73 UNP P04273 EXPRESSION TAG SEQADV 4YXL HIS A 74 UNP P04273 EXPRESSION TAG SEQADV 4YXL HIS A 75 UNP P04273 EXPRESSION TAG SEQADV 4YXL HIS A 76 UNP P04273 EXPRESSION TAG SEQADV 4YXL SER A 77 UNP P04273 EXPRESSION TAG SEQADV 4YXL SER A 78 UNP P04273 EXPRESSION TAG SEQADV 4YXL GLY A 79 UNP P04273 EXPRESSION TAG SEQADV 4YXL LEU A 80 UNP P04273 EXPRESSION TAG SEQADV 4YXL VAL A 81 UNP P04273 EXPRESSION TAG SEQADV 4YXL PRO A 82 UNP P04273 EXPRESSION TAG SEQADV 4YXL ARG A 83 UNP P04273 EXPRESSION TAG SEQADV 4YXL GLY A 84 UNP P04273 EXPRESSION TAG SEQADV 4YXL SER A 85 UNP P04273 EXPRESSION TAG SEQADV 4YXL HIS A 86 UNP P04273 EXPRESSION TAG SEQADV 4YXL MET A 87 UNP P04273 EXPRESSION TAG SEQADV 4YXL LEU A 88 UNP P04273 EXPRESSION TAG SEQADV 4YXL GLU A 89 UNP P04273 EXPRESSION TAG SEQRES 1 A 166 MET GLY SER SER HIS HIS HIS HIS HIS HIS SER SER GLY SEQRES 2 A 166 LEU VAL PRO ARG GLY SER HIS MET LEU GLU GLY GLN GLY SEQRES 3 A 166 GLY GLY THR HIS ASN GLN TRP ASN LYS PRO SER LYS PRO SEQRES 4 A 166 LYS THR ASN MET LYS HIS MET ALA GLY ALA ALA ALA ALA SEQRES 5 A 166 GLY ALA VAL VAL GLY GLY LEU GLY GLY TYR MET LEU GLY SEQRES 6 A 166 SER ALA MET SER ARG PRO MET MET HIS PHE GLY ASN ASP SEQRES 7 A 166 TRP GLU ASP ARG TYR TYR ARG GLU ASN MET ASN ARG TYR SEQRES 8 A 166 PRO ASN GLN VAL TYR TYR ARG PRO VAL ASP GLN TYR ASN SEQRES 9 A 166 ASN GLN ASN ASN PHE VAL HIS ASP CYS VAL ASN ILE THR SEQRES 10 A 166 ILE LYS GLN HIS THR VAL THR THR THR THR LYS GLY GLU SEQRES 11 A 166 ASN PHE THR GLU THR ASP ILE LYS ILE MET GLU ARG VAL SEQRES 12 A 166 VAL GLU GLN MET CYS THR THR GLN TYR GLN LYS GLU SER SEQRES 13 A 166 GLN ALA TYR TYR ASP GLY ARG ARG SER SER SEQRES 1 H 218 GLN VAL GLN LEU GLN GLN SER GLY THR GLU LEU VAL MET SEQRES 2 H 218 PRO GLY ALA SER VAL LYS MET SER CYS LYS ALA SER GLY SEQRES 3 H 218 TYR THR PHE THR ASP TYR TRP MET HIS TRP VAL LYS GLN SEQRES 4 H 218 ARG PRO GLY GLN GLY LEU GLU TRP ILE GLY SER ILE ASP SEQRES 5 H 218 PRO SER ASP SER TYR THR SER HIS ASN GLU LYS PHE LYS SEQRES 6 H 218 GLY LYS ALA THR LEU THR VAL ASP GLU SER SER SER THR SEQRES 7 H 218 ALA TYR MET GLN LEU SER SER LEU THR SER GLU ASP SER SEQRES 8 H 218 ALA VAL TYR PHE CYS SER ARG SER GLY TYR GLY TYR TYR SEQRES 9 H 218 ALA MET GLU TYR TRP GLY GLN GLY THR SER VAL THR VAL SEQRES 10 H 218 SER SER ALA LYS THR ALA PRO PRO SER VAL TYR PRO LEU SEQRES 11 H 218 ALA PRO GLY GLY GLY ALA THR ASN SER MET VAL THR LEU SEQRES 12 H 218 GLY CYS LEU VAL LYS GLY TYR PHE PRO GLU PRO VAL THR SEQRES 13 H 218 VAL THR TRP ASN SER GLY SER LEU SER GLY GLY VAL HIS SEQRES 14 H 218 THR PHE PRO ALA VAL LEU GLN SER ASP LEU TYR THR LEU SEQRES 15 H 218 SER SER SER VAL THR VAL PRO SER SER THR TRP PRO SER SEQRES 16 H 218 GLU THR VAL THR CYS ASN VAL ALA HIS PRO ALA SER SER SEQRES 17 H 218 THR LYS VAL ASP LYS LYS ILE VAL PRO ARG SEQRES 1 L 213 ASP ILE VAL LEU THR GLN SER PRO ALA ILE LEU SER VAL SEQRES 2 L 213 SER PRO GLY GLU ARG VAL SER PHE SER CYS ARG ALA SER SEQRES 3 L 213 GLN ASN ILE GLY THR SER ILE HIS TRP TYR GLN GLN ARG SEQRES 4 L 213 THR ASN GLU SER PRO ARG LEU ILE ILE LYS TYR ALA SER SEQRES 5 L 213 GLU SER ILE SER GLY ILE PRO SER ARG PHE SER GLY SER SEQRES 6 L 213 GLY SER GLY THR ASP PHE THR LEU SER ILE ASN SER VAL SEQRES 7 L 213 GLU SER GLU ASP ILE ALA ASP TYR TYR CYS GLN GLN SER SEQRES 8 L 213 ASN THR TRP PRO TYR THR PHE GLY GLY GLY THR LYS LEU SEQRES 9 L 213 GLU LEU LYS ARG ALA ASP ALA ALA PRO THR VAL SER ILE SEQRES 10 L 213 PHE PRO PRO SER SER GLU GLN LEU THR SER GLY GLY ALA SEQRES 11 L 213 SER VAL VAL CYS PHE LEU ASN ASN PHE TYR PRO LYS ASP SEQRES 12 L 213 ILE ASN VAL LYS TRP LYS ILE ASP GLY SER GLU ARG GLN SEQRES 13 L 213 ASN GLY VAL LEU ASN SER GLU THR ASP GLN ASP SER LYS SEQRES 14 L 213 ASP SER THR TYR SER MET SER SER THR LEU THR LEU THR SEQRES 15 L 213 LYS ASP GLU TYR GLU ARG HIS ASN THR TYR THR CYS GLU SEQRES 16 L 213 ALA THR HIS LYS THR SER THR SER PRO ILE VAL LYS SER SEQRES 17 L 213 PHE ASN ARG ASN GLU HET NA L 301 1 HETNAM NA SODIUM ION FORMUL 4 NA NA 1+ FORMUL 5 HOH *76(H2 O) HELIX 1 AA1 ASN A 143 MET A 154 1 12 HELIX 2 AA2 ASN A 155 TYR A 157 5 3 HELIX 3 AA3 PRO A 165 TYR A 169 5 5 HELIX 4 AA4 ASN A 171 LYS A 194 1 24 HELIX 5 AA5 THR A 199 GLN A 223 1 25 HELIX 6 AA6 THR H 28 TYR H 32 5 5 HELIX 7 AA7 GLU H 62 LYS H 65 5 4 HELIX 8 AA8 THR H 87 SER H 91 5 5 HELIX 9 AA9 SER H 161 SER H 163 5 3 HELIX 10 AB1 PRO H 205 SER H 208 5 4 HELIX 11 AB2 GLU L 79 ILE L 83 5 5 HELIX 12 AB3 SER L 121 SER L 127 1 7 HELIX 13 AB4 ASP L 184 ARG L 188 5 5 SHEET 1 AA1 2 MET A 129 LEU A 130 0 SHEET 2 AA1 2 TYR A 162 TYR A 163 -1 O TYR A 163 N MET A 129 SHEET 1 AA2 4 GLN H 3 GLN H 5 0 SHEET 2 AA2 4 VAL H 18 SER H 25 -1 O LYS H 23 N GLN H 5 SHEET 3 AA2 4 THR H 78 LEU H 83 -1 O ALA H 79 N CYS H 22 SHEET 4 AA2 4 ALA H 68 ASP H 73 -1 N THR H 71 O TYR H 80 SHEET 1 AA3 6 THR H 9 VAL H 12 0 SHEET 2 AA3 6 THR H 113 VAL H 117 1 O THR H 116 N GLU H 10 SHEET 3 AA3 6 ALA H 92 ARG H 98 -1 N ALA H 92 O VAL H 115 SHEET 4 AA3 6 MET H 34 GLN H 39 -1 N GLN H 39 O VAL H 93 SHEET 5 AA3 6 LEU H 45 ASP H 52 -1 O ILE H 51 N MET H 34 SHEET 6 AA3 6 TYR H 57 HIS H 60 -1 O TYR H 57 N ASP H 52 SHEET 1 AA4 4 THR H 9 VAL H 12 0 SHEET 2 AA4 4 THR H 113 VAL H 117 1 O THR H 116 N GLU H 10 SHEET 3 AA4 4 ALA H 92 ARG H 98 -1 N ALA H 92 O VAL H 115 SHEET 4 AA4 4 TYR H 108 TRP H 109 -1 O TYR H 108 N ARG H 98 SHEET 1 AA5 4 SER H 126 LEU H 130 0 SHEET 2 AA5 4 MET H 140 TYR H 150 -1 O LEU H 146 N TYR H 128 SHEET 3 AA5 4 LEU H 179 PRO H 189 -1 O VAL H 188 N VAL H 141 SHEET 4 AA5 4 VAL H 168 THR H 170 -1 N HIS H 169 O SER H 185 SHEET 1 AA6 4 SER H 126 LEU H 130 0 SHEET 2 AA6 4 MET H 140 TYR H 150 -1 O LEU H 146 N TYR H 128 SHEET 3 AA6 4 LEU H 179 PRO H 189 -1 O VAL H 188 N VAL H 141 SHEET 4 AA6 4 VAL H 174 GLN H 176 -1 N GLN H 176 O LEU H 179 SHEET 1 AA7 3 THR H 156 TRP H 159 0 SHEET 2 AA7 3 THR H 199 HIS H 204 -1 O ALA H 203 N THR H 156 SHEET 3 AA7 3 THR H 209 LYS H 214 -1 O VAL H 211 N VAL H 202 SHEET 1 AA8 4 LEU L 4 SER L 7 0 SHEET 2 AA8 4 VAL L 19 ALA L 25 -1 O SER L 22 N SER L 7 SHEET 3 AA8 4 ASP L 70 ILE L 75 -1 O LEU L 73 N PHE L 21 SHEET 4 AA8 4 PHE L 62 SER L 65 -1 N SER L 63 O SER L 74 SHEET 1 AA9 5 ILE L 10 VAL L 13 0 SHEET 2 AA9 5 THR L 102 LEU L 106 1 O GLU L 105 N VAL L 13 SHEET 3 AA9 5 ASP L 85 GLN L 90 -1 N TYR L 86 O THR L 102 SHEET 4 AA9 5 ILE L 33 GLN L 38 -1 N GLN L 38 O ASP L 85 SHEET 5 AA9 5 ARG L 45 ILE L 48 -1 O ARG L 45 N GLN L 37 SHEET 1 AB1 4 ILE L 10 VAL L 13 0 SHEET 2 AB1 4 THR L 102 LEU L 106 1 O GLU L 105 N VAL L 13 SHEET 3 AB1 4 ASP L 85 GLN L 90 -1 N TYR L 86 O THR L 102 SHEET 4 AB1 4 THR L 97 PHE L 98 -1 O THR L 97 N GLN L 90 SHEET 1 AB2 4 THR L 114 PHE L 118 0 SHEET 2 AB2 4 GLY L 129 PHE L 139 -1 O PHE L 135 N SER L 116 SHEET 3 AB2 4 TYR L 173 THR L 182 -1 O MET L 175 N LEU L 136 SHEET 4 AB2 4 VAL L 159 GLU L 163 -1 N SER L 162 O SER L 176 SHEET 1 AB3 3 ASN L 145 ILE L 150 0 SHEET 2 AB3 3 THR L 191 THR L 197 -1 O THR L 193 N LYS L 149 SHEET 3 AB3 3 ILE L 205 ASN L 210 -1 O PHE L 209 N TYR L 192 SSBOND 1 CYS A 179 CYS A 214 1555 1555 2.05 SSBOND 2 CYS H 22 CYS H 96 1555 1555 2.06 SSBOND 3 CYS H 145 CYS H 200 1555 1555 2.05 SSBOND 4 CYS L 23 CYS L 88 1555 1555 2.04 SSBOND 5 CYS L 134 CYS L 194 1555 1555 2.04 LINK O SER H 191 NA NA L 301 1555 2655 2.69 LINK OG SER H 195 NA NA L 301 1555 2655 3.02 LINK OE1 GLU L 79 NA NA L 301 1555 1555 2.28 LINK OE2 GLU L 79 NA NA L 301 1555 1555 2.42 CISPEP 1 PHE H 151 PRO H 152 0 -3.09 CISPEP 2 GLU H 153 PRO H 154 0 -0.21 CISPEP 3 TRP H 193 PRO H 194 0 4.79 CISPEP 4 SER L 7 PRO L 8 0 -8.36 CISPEP 5 TRP L 94 PRO L 95 0 -2.94 CISPEP 6 TYR L 140 PRO L 141 0 4.93 SITE 1 AC1 5 SER H 191 SER H 195 GLU H 196 GLU L 79 SITE 2 AC1 5 GLU L 81 CRYST1 83.916 105.969 76.326 90.00 95.37 90.00 C 1 2 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.011917 0.000000 0.001120 0.00000 SCALE2 0.000000 0.009437 0.000000 0.00000 SCALE3 0.000000 0.000000 0.013159 0.00000