HEADER TRANSFERASE 23-MAR-15 4YXT TITLE PKSG, A HMG-COA SYNTHASE FROM BACILLUS SUBTILUS COMPND MOL_ID: 1; COMPND 2 MOLECULE: POLYKETIDE BIOSYNTHESIS 3-HYDROXY-3-METHYLGLUTARYL-ACP COMPND 3 SYNTHASE PKSG; COMPND 4 CHAIN: A, B; COMPND 5 SYNONYM: HMG SYNTHASE; COMPND 6 EC: 2.3.3.-; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: BACILLUS SUBTILIS (STRAIN 168); SOURCE 3 ORGANISM_TAXID: 224308; SOURCE 4 GENE: PKSG, BSU17150; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS BACILLAENE, POLYKETIDE, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR M.TILL,A.V.NAIR,A.ROBSON,P.R.RACE REVDAT 2 08-MAY-24 4YXT 1 REMARK REVDAT 1 29-JUN-16 4YXT 0 JRNL AUTH M.TILL,A.V.NAIR,A.ROBSON,P.R.RACE JRNL TITL PKSG, A HMG-COA SYNTHASE FROM BACILLUS SUBTILUS JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 2.10 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.7.0029 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.10 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 64.70 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 3 NUMBER OF REFLECTIONS : 42393 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.201 REMARK 3 R VALUE (WORKING SET) : 0.198 REMARK 3 FREE R VALUE : 0.254 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 2247 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.10 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.16 REMARK 3 REFLECTION IN BIN (WORKING SET) : 3072 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.69 REMARK 3 BIN R VALUE (WORKING SET) : 0.2560 REMARK 3 BIN FREE R VALUE SET COUNT : 170 REMARK 3 BIN FREE R VALUE : 0.2980 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 6243 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 145 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 30.78 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -3.01000 REMARK 3 B22 (A**2) : -3.38000 REMARK 3 B33 (A**2) : 6.39000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.260 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.211 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.156 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 5.916 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.944 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.902 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 6370 ; 0.016 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): 5954 ; 0.001 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 8598 ; 1.780 ; 1.965 REMARK 3 BOND ANGLES OTHERS (DEGREES): 13698 ; 0.883 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 800 ; 6.971 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 287 ;34.534 ;23.659 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 1072 ;17.354 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 42 ;19.783 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 935 ; 0.103 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 7258 ; 0.008 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 1480 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS U VALUES : REFINED INDIVIDUALLY REMARK 4 REMARK 4 4YXT COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 23-MAR-15. REMARK 100 THE DEPOSITION ID IS D_1000208269. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 28-FEB-13 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : DIAMOND REMARK 200 BEAMLINE : I03 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9763 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : AIMLESS 0.1.27 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 60147 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.900 REMARK 200 RESOLUTION RANGE LOW (A) : 64.700 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 10.80 REMARK 200 R MERGE (I) : 0.23200 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 7.4000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.90 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.94 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 9.70 REMARK 200 R MERGE FOR SHELL (I) : 2.57400 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.800 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 38.80 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.01 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: MORPHEUS SCREEN A6 (MOLECULAR REMARK 280 DIMENSIONS), VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 291K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 40.58000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 53.59000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 43.22500 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 53.59000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 40.58000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 43.22500 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 5780 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 29010 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -30.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 PHE A 148 REMARK 465 LEU A 149 REMARK 465 ILE A 150 REMARK 465 ALA A 151 REMARK 465 GLU A 152 REMARK 465 GLY A 153 REMARK 465 GLY A 154 REMARK 465 ASP A 155 REMARK 465 ALA A 156 REMARK 465 LEU A 157 REMARK 465 SER A 158 REMARK 465 GLU A 159 REMARK 465 GLY A 373 REMARK 465 SER A 374 REMARK 465 GLY A 375 REMARK 465 ARG B 147 REMARK 465 PHE B 148 REMARK 465 LEU B 149 REMARK 465 ILE B 150 REMARK 465 ALA B 151 REMARK 465 GLU B 152 REMARK 465 GLY B 153 REMARK 465 GLY B 154 REMARK 465 ASP B 155 REMARK 465 ALA B 156 REMARK 465 LEU B 157 REMARK 465 SER B 158 REMARK 465 GLU B 159 REMARK 465 ASP B 160 REMARK 465 PHE B 371 REMARK 465 LYS B 372 REMARK 465 GLY B 373 REMARK 465 SER B 374 REMARK 465 SER B 420 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ASP A 160 CG OD1 OD2 REMARK 470 TRP A 161 CG CD1 CD2 NE1 CE2 CE3 CZ2 REMARK 470 TRP A 161 CZ3 CH2 REMARK 470 PHE A 371 CG CD1 CD2 CE1 CE2 CZ REMARK 470 LYS A 372 CG CD CE NZ REMARK 470 ARG A 378 CG CD NE CZ NH1 NH2 REMARK 470 LYS A 385 CG CD CE NZ REMARK 470 MET A 390 CG SD CE REMARK 470 GLN A 396 CG CD OE1 NE2 REMARK 470 GLN A 399 CG CD OE1 NE2 REMARK 470 TYR B 26 CG CD1 CD2 CE1 CE2 CZ OH REMARK 470 ARG B 33 CG CD NE CZ NH1 NH2 REMARK 470 GLN B 396 CG CD OE1 NE2 REMARK 470 GLN B 399 CG CD OE1 NE2 REMARK 470 GLU B 400 CG CD OE1 OE2 REMARK 470 ARG B 417 CG CD NE CZ NH1 NH2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OH TYR A 98 O HOH A 501 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 103 NE - CZ - NH2 ANGL. DEV. = -3.9 DEGREES REMARK 500 ARG A 234 NE - CZ - NH1 ANGL. DEV. = 3.7 DEGREES REMARK 500 ARG A 234 NE - CZ - NH2 ANGL. DEV. = -3.1 DEGREES REMARK 500 ARG B 103 NE - CZ - NH1 ANGL. DEV. = 4.3 DEGREES REMARK 500 ARG B 103 NE - CZ - NH2 ANGL. DEV. = -3.9 DEGREES REMARK 500 MET B 265 CG - SD - CE ANGL. DEV. = 12.3 DEGREES REMARK 500 ARG B 283 NE - CZ - NH1 ANGL. DEV. = 4.7 DEGREES REMARK 500 ARG B 283 NE - CZ - NH2 ANGL. DEV. = -5.4 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LEU A 38 48.53 72.94 REMARK 500 LYS A 40 -39.98 -130.92 REMARK 500 GLN A 112 59.70 -172.78 REMARK 500 ALA A 113 -134.14 45.65 REMARK 500 ASN A 180 69.59 -118.92 REMARK 500 ALA A 269 -108.86 -122.82 REMARK 500 LYS A 270 67.68 33.52 REMARK 500 MET A 298 -114.79 61.71 REMARK 500 PHE A 371 -11.49 -47.59 REMARK 500 GLN A 399 56.82 -148.36 REMARK 500 GLU A 400 -80.09 -52.96 REMARK 500 PHE A 412 -4.56 65.28 REMARK 500 GLN B 112 65.78 -167.63 REMARK 500 ALA B 113 -136.33 47.21 REMARK 500 MET B 298 -114.14 61.52 REMARK 500 LEU B 369 92.48 -52.98 REMARK 500 SER B 397 104.14 90.35 REMARK 500 GLU B 408 149.39 -170.65 REMARK 500 PHE B 412 -10.63 68.53 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 ALA A 269 LYS A 270 -148.00 REMARK 500 REMARK 500 REMARK: NULL DBREF 4YXT A 1 420 UNP P40830 PKSG_BACSU 1 420 DBREF 4YXT B 1 420 UNP P40830 PKSG_BACSU 1 420 SEQADV 4YXT ALA A 82 UNP P40830 GLU 82 ENGINEERED MUTATION SEQADV 4YXT ALA B 82 UNP P40830 GLU 82 ENGINEERED MUTATION SEQRES 1 A 420 MET VAL SER ALA GLY ILE GLU ALA MET ASN VAL PHE GLY SEQRES 2 A 420 GLY THR ALA TYR LEU ASP VAL MET GLU LEU ALA LYS TYR SEQRES 3 A 420 ARG HIS LEU ASP THR ALA ARG PHE GLU ASN LEU LEU MET SEQRES 4 A 420 LYS GLU LYS ALA VAL ALA LEU PRO TYR GLU ASP PRO VAL SEQRES 5 A 420 THR PHE GLY VAL ASN ALA ALA LYS PRO ILE ILE ASP ALA SEQRES 6 A 420 LEU SER GLU ALA GLU LYS ASP ARG ILE GLU LEU LEU ILE SEQRES 7 A 420 THR CYS SER ALA SER GLY ILE ASP PHE GLY LYS SER LEU SEQRES 8 A 420 SER THR TYR ILE HIS GLU TYR LEU GLY LEU ASN ARG ASN SEQRES 9 A 420 CYS ARG LEU PHE GLU VAL LYS GLN ALA CYS TYR SER GLY SEQRES 10 A 420 THR ALA GLY PHE GLN MET ALA VAL ASN PHE ILE LEU SER SEQRES 11 A 420 GLN THR SER PRO GLY ALA LYS ALA LEU VAL ILE ALA SER SEQRES 12 A 420 ASP ILE SER ARG PHE LEU ILE ALA GLU GLY GLY ASP ALA SEQRES 13 A 420 LEU SER GLU ASP TRP SER TYR ALA GLU PRO SER ALA GLY SEQRES 14 A 420 ALA GLY ALA VAL ALA VAL LEU VAL GLY GLU ASN PRO GLU SEQRES 15 A 420 VAL PHE GLN ILE ASP PRO GLY ALA ASN GLY TYR TYR GLY SEQRES 16 A 420 TYR GLU VAL MET ASP THR CYS ARG PRO ILE PRO ASP SER SEQRES 17 A 420 GLU ALA GLY ASP SER ASP LEU SER LEU MET SER TYR LEU SEQRES 18 A 420 ASP CYS CYS GLU GLN THR PHE LEU GLU TYR GLN LYS ARG SEQRES 19 A 420 VAL PRO GLY ALA ASN TYR GLN ASP THR PHE GLN TYR LEU SEQRES 20 A 420 ALA TYR HIS THR PRO PHE GLY GLY MET VAL LYS GLY ALA SEQRES 21 A 420 HIS ARG THR MET MET ARG LYS VAL ALA LYS VAL LYS THR SEQRES 22 A 420 SER GLY ILE GLU THR ASP PHE LEU THR ARG VAL LYS PRO SEQRES 23 A 420 GLY LEU ASN TYR CYS GLN ARG VAL GLY ASN ILE MET GLY SEQRES 24 A 420 ALA ALA LEU PHE LEU ALA LEU ALA SER THR ILE ASP GLN SEQRES 25 A 420 GLY ARG PHE ASP THR PRO LYS ARG ILE GLY CYS PHE SER SEQRES 26 A 420 TYR GLY SER GLY CYS CYS SER GLU PHE TYR SER GLY ILE SEQRES 27 A 420 THR THR PRO GLN GLY GLN GLU ARG GLN ARG THR PHE GLY SEQRES 28 A 420 ILE GLU LYS HIS LEU ASP ARG ARG TYR GLN LEU SER MET SEQRES 29 A 420 GLU GLU TYR GLU LEU LEU PHE LYS GLY SER GLY MET VAL SEQRES 30 A 420 ARG PHE GLY THR ARG ASN VAL LYS LEU ASP PHE GLU MET SEQRES 31 A 420 ILE PRO GLY ILE MET GLN SER THR GLN GLU LYS PRO ARG SEQRES 32 A 420 LEU PHE LEU GLU GLU ILE SER GLU PHE HIS ARG LYS TYR SEQRES 33 A 420 ARG TRP ILE SER SEQRES 1 B 420 MET VAL SER ALA GLY ILE GLU ALA MET ASN VAL PHE GLY SEQRES 2 B 420 GLY THR ALA TYR LEU ASP VAL MET GLU LEU ALA LYS TYR SEQRES 3 B 420 ARG HIS LEU ASP THR ALA ARG PHE GLU ASN LEU LEU MET SEQRES 4 B 420 LYS GLU LYS ALA VAL ALA LEU PRO TYR GLU ASP PRO VAL SEQRES 5 B 420 THR PHE GLY VAL ASN ALA ALA LYS PRO ILE ILE ASP ALA SEQRES 6 B 420 LEU SER GLU ALA GLU LYS ASP ARG ILE GLU LEU LEU ILE SEQRES 7 B 420 THR CYS SER ALA SER GLY ILE ASP PHE GLY LYS SER LEU SEQRES 8 B 420 SER THR TYR ILE HIS GLU TYR LEU GLY LEU ASN ARG ASN SEQRES 9 B 420 CYS ARG LEU PHE GLU VAL LYS GLN ALA CYS TYR SER GLY SEQRES 10 B 420 THR ALA GLY PHE GLN MET ALA VAL ASN PHE ILE LEU SER SEQRES 11 B 420 GLN THR SER PRO GLY ALA LYS ALA LEU VAL ILE ALA SER SEQRES 12 B 420 ASP ILE SER ARG PHE LEU ILE ALA GLU GLY GLY ASP ALA SEQRES 13 B 420 LEU SER GLU ASP TRP SER TYR ALA GLU PRO SER ALA GLY SEQRES 14 B 420 ALA GLY ALA VAL ALA VAL LEU VAL GLY GLU ASN PRO GLU SEQRES 15 B 420 VAL PHE GLN ILE ASP PRO GLY ALA ASN GLY TYR TYR GLY SEQRES 16 B 420 TYR GLU VAL MET ASP THR CYS ARG PRO ILE PRO ASP SER SEQRES 17 B 420 GLU ALA GLY ASP SER ASP LEU SER LEU MET SER TYR LEU SEQRES 18 B 420 ASP CYS CYS GLU GLN THR PHE LEU GLU TYR GLN LYS ARG SEQRES 19 B 420 VAL PRO GLY ALA ASN TYR GLN ASP THR PHE GLN TYR LEU SEQRES 20 B 420 ALA TYR HIS THR PRO PHE GLY GLY MET VAL LYS GLY ALA SEQRES 21 B 420 HIS ARG THR MET MET ARG LYS VAL ALA LYS VAL LYS THR SEQRES 22 B 420 SER GLY ILE GLU THR ASP PHE LEU THR ARG VAL LYS PRO SEQRES 23 B 420 GLY LEU ASN TYR CYS GLN ARG VAL GLY ASN ILE MET GLY SEQRES 24 B 420 ALA ALA LEU PHE LEU ALA LEU ALA SER THR ILE ASP GLN SEQRES 25 B 420 GLY ARG PHE ASP THR PRO LYS ARG ILE GLY CYS PHE SER SEQRES 26 B 420 TYR GLY SER GLY CYS CYS SER GLU PHE TYR SER GLY ILE SEQRES 27 B 420 THR THR PRO GLN GLY GLN GLU ARG GLN ARG THR PHE GLY SEQRES 28 B 420 ILE GLU LYS HIS LEU ASP ARG ARG TYR GLN LEU SER MET SEQRES 29 B 420 GLU GLU TYR GLU LEU LEU PHE LYS GLY SER GLY MET VAL SEQRES 30 B 420 ARG PHE GLY THR ARG ASN VAL LYS LEU ASP PHE GLU MET SEQRES 31 B 420 ILE PRO GLY ILE MET GLN SER THR GLN GLU LYS PRO ARG SEQRES 32 B 420 LEU PHE LEU GLU GLU ILE SER GLU PHE HIS ARG LYS TYR SEQRES 33 B 420 ARG TRP ILE SER FORMUL 3 HOH *145(H2 O) HELIX 1 AA1 VAL A 20 HIS A 28 1 9 HELIX 2 AA2 ASP A 30 LEU A 38 1 9 HELIX 3 AA3 ASP A 50 ALA A 65 1 16 HELIX 4 AA4 SER A 67 ARG A 73 1 7 HELIX 5 AA5 SER A 90 GLY A 100 1 11 HELIX 6 AA6 GLN A 112 CYS A 114 5 3 HELIX 7 AA7 TYR A 115 GLN A 131 1 17 HELIX 8 AA8 TRP A 161 GLU A 165 1 5 HELIX 9 AA9 PRO A 166 ALA A 168 5 3 HELIX 10 AB1 ASP A 212 VAL A 235 1 24 HELIX 11 AB2 PHE A 253 VAL A 268 1 16 HELIX 12 AB3 LYS A 272 VAL A 284 1 13 HELIX 13 AB4 VAL A 284 ASN A 289 1 6 HELIX 14 AB5 TYR A 290 GLY A 295 1 6 HELIX 15 AB6 ILE A 297 GLY A 299 5 3 HELIX 16 AB7 ALA A 300 GLY A 313 1 14 HELIX 17 AB8 THR A 340 PHE A 350 1 11 HELIX 18 AB9 GLY A 351 ARG A 358 1 8 HELIX 19 AC1 SER A 363 PHE A 371 1 9 HELIX 20 AC2 PRO A 392 THR A 398 1 7 HELIX 21 AC3 VAL B 20 ARG B 27 1 8 HELIX 22 AC4 ASP B 30 ASN B 36 1 7 HELIX 23 AC5 ASP B 50 LEU B 66 1 17 HELIX 24 AC6 SER B 67 ASP B 72 1 6 HELIX 25 AC7 SER B 90 GLY B 100 1 11 HELIX 26 AC8 GLN B 112 CYS B 114 5 3 HELIX 27 AC9 TYR B 115 GLN B 131 1 17 HELIX 28 AD1 ALA B 164 ALA B 168 5 5 HELIX 29 AD2 ASP B 212 VAL B 235 1 24 HELIX 30 AD3 PHE B 253 ALA B 269 1 17 HELIX 31 AD4 SER B 274 VAL B 284 1 11 HELIX 32 AD5 VAL B 284 GLY B 295 1 12 HELIX 33 AD6 ILE B 297 GLY B 299 5 3 HELIX 34 AD7 ALA B 300 GLY B 313 1 14 HELIX 35 AD8 THR B 340 THR B 349 1 10 HELIX 36 AD9 GLY B 351 ARG B 358 1 8 HELIX 37 AE1 SER B 363 LEU B 369 1 7 HELIX 38 AE2 ILE B 391 GLN B 396 1 6 SHEET 1 AA118 TYR A 246 TYR A 249 0 SHEET 2 AA118 LYS A 319 GLY A 327 1 O GLY A 322 N ALA A 248 SHEET 3 AA118 CYS A 331 THR A 339 -1 O GLY A 337 N ILE A 321 SHEET 4 AA118 PHE A 184 GLY A 195 -1 N GLN A 185 O ILE A 338 SHEET 5 AA118 GLY A 5 PHE A 12 -1 N ILE A 6 O PHE A 184 SHEET 6 AA118 ALA A 170 GLY A 178 -1 O ALA A 172 N PHE A 12 SHEET 7 AA118 LYS A 137 ILE A 145 -1 N VAL A 140 O VAL A 175 SHEET 8 AA118 ILE A 74 CYS A 80 1 N LEU A 76 O LEU A 139 SHEET 9 AA118 ARG A 106 LYS A 111 1 O ARG A 106 N LEU A 77 SHEET 10 AA118 ARG B 106 LYS B 111 -1 O LYS B 111 N GLU A 109 SHEET 11 AA118 ILE B 74 CYS B 80 1 N LEU B 77 O ARG B 106 SHEET 12 AA118 LYS B 137 ILE B 145 1 O ILE B 141 N CYS B 80 SHEET 13 AA118 ALA B 170 GLY B 178 -1 O VAL B 175 N VAL B 140 SHEET 14 AA118 GLY B 5 PHE B 12 -1 N ASN B 10 O ALA B 174 SHEET 15 AA118 PHE B 184 GLY B 195 -1 O PHE B 184 N ILE B 6 SHEET 16 AA118 CYS B 331 THR B 339 -1 O ILE B 338 N GLN B 185 SHEET 17 AA118 LYS B 319 GLY B 327 -1 N CYS B 323 O TYR B 335 SHEET 18 AA118 TYR B 246 TYR B 249 1 N ALA B 248 O PHE B 324 SHEET 1 AA2 3 GLU A 41 ALA A 43 0 SHEET 2 AA2 3 ALA A 16 ASP A 19 -1 N LEU A 18 O LYS A 42 SHEET 3 AA2 3 TYR A 360 GLN A 361 1 O TYR A 360 N TYR A 17 SHEET 1 AA3 2 THR A 201 ILE A 205 0 SHEET 2 AA3 2 SER A 208 GLY A 211 -1 O ALA A 210 N CYS A 202 SHEET 1 AA4 3 VAL A 384 LYS A 385 0 SHEET 2 AA4 3 ARG A 403 SER A 410 -1 O ILE A 409 N VAL A 384 SHEET 3 AA4 3 HIS A 413 ILE A 419 -1 O LYS A 415 N GLU A 408 SHEET 1 AA5 3 GLU B 41 VAL B 44 0 SHEET 2 AA5 3 ALA B 16 ASP B 19 -1 N ALA B 16 O VAL B 44 SHEET 3 AA5 3 TYR B 360 GLN B 361 1 O TYR B 360 N TYR B 17 SHEET 1 AA6 2 THR B 201 CYS B 202 0 SHEET 2 AA6 2 ALA B 210 GLY B 211 -1 O ALA B 210 N CYS B 202 SHEET 1 AA7 3 ASN B 383 LYS B 385 0 SHEET 2 AA7 3 ARG B 403 SER B 410 -1 O ILE B 409 N VAL B 384 SHEET 3 AA7 3 HIS B 413 ILE B 419 -1 O ILE B 419 N ARG B 403 CISPEP 1 GLY A 329 CYS A 330 0 6.99 CISPEP 2 GLY B 329 CYS B 330 0 -3.95 CRYST1 81.160 86.450 107.180 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.012321 0.000000 0.000000 0.00000 SCALE2 0.000000 0.011567 0.000000 0.00000 SCALE3 0.000000 0.000000 0.009330 0.00000