HEADER DE NOVO PROTEIN 23-MAR-15 4YY2 TITLE COMPUTATIONALLY DESIGNED LEFT-HANDED ALPHA/ALPHA TOROID WITH 3 REPEATS TITLE 2 IN SPACE GROUP P212121 COMPND MOL_ID: 1; COMPND 2 MOLECULE: DTOR_3X33L; COMPND 3 CHAIN: A, B, C, D; COMPND 4 FRAGMENT: DTOR_3X33L; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 SYNTHETIC: YES; SOURCE 3 ORGANISM_SCIENTIFIC: SYNTHETIC CONSTRUCT; SOURCE 4 ORGANISM_TAXID: 32630; SOURCE 5 OTHER_DETAILS: ROSETTA DESIGNED KEYWDS ROSETTA, TOROID, ALPHA HELIX, COMPUTATIONALLY DESIGNED, LEFT-HANDED, KEYWDS 2 DE NOVO PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR J.P.HALLINAN,P.BRADLEY,B.L.STODDARD REVDAT 7 06-MAR-24 4YY2 1 LINK REVDAT 6 25-DEC-19 4YY2 1 REMARK REVDAT 5 22-NOV-17 4YY2 1 REMARK REVDAT 4 06-SEP-17 4YY2 1 JRNL REMARK REVDAT 3 06-JAN-16 4YY2 1 JRNL REVDAT 2 30-DEC-15 4YY2 1 JRNL REVDAT 1 16-DEC-15 4YY2 0 JRNL AUTH L.DOYLE,J.HALLINAN,J.BOLDUC,F.PARMEGGIANI,D.BAKER, JRNL AUTH 2 B.L.STODDARD,P.BRADLEY JRNL TITL RATIONAL DESIGN OF ALPHA-HELICAL TANDEM REPEAT PROTEINS WITH JRNL TITL 2 CLOSED ARCHITECTURES. JRNL REF NATURE V. 528 585 2015 JRNL REFN ESSN 1476-4687 JRNL PMID 26675735 JRNL DOI 10.1038/NATURE16191 REMARK 2 REMARK 2 RESOLUTION. 1.85 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0049 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.85 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 50.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 90.6 REMARK 3 NUMBER OF REFLECTIONS : 29249 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.231 REMARK 3 R VALUE (WORKING SET) : 0.228 REMARK 3 FREE R VALUE : 0.283 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 1562 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.85 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.90 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2208 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 94.19 REMARK 3 BIN R VALUE (WORKING SET) : 0.2460 REMARK 3 BIN FREE R VALUE SET COUNT : 110 REMARK 3 BIN FREE R VALUE : 0.2870 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3038 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 8 REMARK 3 SOLVENT ATOMS : 139 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 42.07 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 1.82000 REMARK 3 B22 (A**2) : 1.02000 REMARK 3 B33 (A**2) : -2.84000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.195 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.182 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.112 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 7.941 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.954 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.902 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3070 ; 0.017 ; 0.020 REMARK 3 BOND LENGTHS OTHERS (A): 3104 ; 0.009 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 4121 ; 1.721 ; 2.027 REMARK 3 BOND ANGLES OTHERS (DEGREES): 7253 ; 1.624 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 391 ; 4.776 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 104 ;35.598 ;26.731 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 643 ;15.902 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 7 ;15.146 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 504 ; 0.095 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 3244 ; 0.010 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 511 ; 0.007 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1576 ; 3.333 ; 3.639 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 1575 ; 3.333 ; 3.637 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 1963 ; 4.361 ; 5.430 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NCS TYPE: LOCAL REMARK 3 NUMBER OF DIFFERENT NCS PAIRS : 6 REMARK 3 GROUP CHAIN1 RANGE CHAIN2 RANGE COUNT RMS WEIGHT REMARK 3 1 A 2 100 B 2 100 5199 0.190 0.050 REMARK 3 2 A 3 99 C 3 99 5380 0.180 0.050 REMARK 3 3 A 2 100 D 2 100 5525 0.170 0.050 REMARK 3 4 B 3 99 C 3 99 5332 0.170 0.050 REMARK 3 5 B 2 100 D 2 100 5299 0.180 0.050 REMARK 3 6 C 3 99 D 3 99 5490 0.180 0.050 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 4 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 2 A 100 REMARK 3 ORIGIN FOR THE GROUP (A): 1.1002 75.1696 5.2199 REMARK 3 T TENSOR REMARK 3 T11: 0.0114 T22: 0.0251 REMARK 3 T33: 0.0145 T12: -0.0003 REMARK 3 T13: 0.0017 T23: 0.0036 REMARK 3 L TENSOR REMARK 3 L11: 0.5483 L22: 0.4425 REMARK 3 L33: 0.3134 L12: -0.0955 REMARK 3 L13: -0.0342 L23: -0.0995 REMARK 3 S TENSOR REMARK 3 S11: -0.0118 S12: 0.0132 S13: -0.0005 REMARK 3 S21: 0.0139 S22: 0.0156 S23: 0.0102 REMARK 3 S31: 0.0285 S32: -0.0370 S33: -0.0038 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 2 B 100 REMARK 3 ORIGIN FOR THE GROUP (A): 17.4976 70.1561 25.6783 REMARK 3 T TENSOR REMARK 3 T11: 0.0263 T22: 0.0016 REMARK 3 T33: 0.0169 T12: 0.0022 REMARK 3 T13: 0.0009 T23: -0.0030 REMARK 3 L TENSOR REMARK 3 L11: 0.6102 L22: 0.4404 REMARK 3 L33: 0.3950 L12: -0.0622 REMARK 3 L13: -0.0056 L23: -0.0682 REMARK 3 S TENSOR REMARK 3 S11: -0.0388 S12: -0.0170 S13: 0.0080 REMARK 3 S21: -0.0314 S22: 0.0088 S23: -0.0107 REMARK 3 S31: -0.0090 S32: 0.0044 S33: 0.0300 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : C 3 C 100 REMARK 3 ORIGIN FOR THE GROUP (A): 13.3361 59.9681 -12.7728 REMARK 3 T TENSOR REMARK 3 T11: 0.0148 T22: 0.0142 REMARK 3 T33: 0.0203 T12: 0.0012 REMARK 3 T13: -0.0121 T23: -0.0083 REMARK 3 L TENSOR REMARK 3 L11: 0.4097 L22: 0.8421 REMARK 3 L33: 0.8895 L12: 0.0765 REMARK 3 L13: -0.1319 L23: 0.3592 REMARK 3 S TENSOR REMARK 3 S11: 0.0032 S12: 0.0349 S13: -0.0177 REMARK 3 S21: 0.0555 S22: -0.0152 S23: -0.0223 REMARK 3 S31: 0.0662 S32: -0.0077 S33: 0.0120 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : D 2 D 100 REMARK 3 ORIGIN FOR THE GROUP (A): -2.0097 93.8158 32.3657 REMARK 3 T TENSOR REMARK 3 T11: 0.0133 T22: 0.0117 REMARK 3 T33: 0.0349 T12: -0.0050 REMARK 3 T13: -0.0034 T23: -0.0133 REMARK 3 L TENSOR REMARK 3 L11: 0.9810 L22: 0.1841 REMARK 3 L33: 0.7183 L12: -0.0581 REMARK 3 L13: 0.1525 L23: -0.1056 REMARK 3 S TENSOR REMARK 3 S11: -0.0059 S12: 0.0778 S13: -0.0850 REMARK 3 S21: 0.0216 S22: -0.0190 S23: -0.0242 REMARK 3 S31: 0.0369 S32: -0.0052 S33: 0.0249 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS U VALUES : WITH TLS ADDED REMARK 4 REMARK 4 4YY2 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 24-MAR-15. REMARK 100 THE DEPOSITION ID IS D_1000208285. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 04-DEC-14 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : RIGAKU MICROMAX-007 HF REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.54 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : RIGAKU SATURN 944+ REMARK 200 INTENSITY-INTEGRATION SOFTWARE : NULL REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 30892 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.850 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 90.8 REMARK 200 DATA REDUNDANCY : 6.000 REMARK 200 R MERGE (I) : 0.05600 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 18.4000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.85 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.92 REMARK 200 COMPLETENESS FOR SHELL (%) : 95.9 REMARK 200 DATA REDUNDANCY IN SHELL : 7.00 REMARK 200 R MERGE FOR SHELL (I) : 0.50000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: ROSETTA DESIGN REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 43.95 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.19 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 30% PEG 3350, 0.2M SODIUM CHLORIDE, REMARK 280 100MM TRIS PH 6.5, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE REMARK 280 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 18.56950 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 76.17850 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 34.30150 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 76.17850 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 18.56950 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 34.30150 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2, 3, 4 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 3 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 4 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A -2 REMARK 465 SER A -1 REMARK 465 SER A 0 REMARK 465 MET A 1 REMARK 465 GLY B -2 REMARK 465 SER B -1 REMARK 465 SER B 0 REMARK 465 MET B 1 REMARK 465 GLY C -2 REMARK 465 SER C -1 REMARK 465 SER C 0 REMARK 465 MET C 1 REMARK 465 GLY C 2 REMARK 465 GLY D -2 REMARK 465 SER D -1 REMARK 465 SER D 0 REMARK 465 MET D 1 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 54 CG CD CE NZ REMARK 470 LYS A 69 CG CD CE NZ REMARK 470 GLU B 15 CG CD OE1 OE2 REMARK 470 GLU B 22 CG CD OE1 OE2 REMARK 470 GLU B 23 CG CD OE1 OE2 REMARK 470 LYS B 25 CG CD CE NZ REMARK 470 LYS B 63 CG CD CE NZ REMARK 470 LYS B 87 CG CD CE NZ REMARK 470 LYS B 96 CG CD CE NZ REMARK 470 LYS C 30 CG CD CE NZ REMARK 470 ARG C 33 CG CD NE CZ NH1 NH2 REMARK 470 LYS C 87 CG CD CE NZ REMARK 470 LYS D 27 CG CD CE NZ REMARK 470 LYS D 30 CG CD CE NZ REMARK 470 LYS D 63 CG CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 NA NA B 202 O HOH A 337 1.45 REMARK 500 OG1 THR C 19 O HOH C 201 1.61 REMARK 500 NA NA A 202 O HOH A 312 1.62 REMARK 500 NA NA B 201 O HOH A 336 1.68 REMARK 500 NZ LYS D 96 O HOH D 201 1.81 REMARK 500 O HOH B 319 O HOH B 331 1.84 REMARK 500 O HOH B 330 O HOH B 339 1.98 REMARK 500 O LEU C 98 O HOH C 202 2.05 REMARK 500 O SER C 17 N THR C 19 2.09 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH B 344 O HOH C 218 4565 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 THR C 19 158.75 -37.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 339 DISTANCE = 6.55 ANGSTROMS REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA B 204 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH B 337 O REMARK 620 2 HOH B 339 O 56.9 REMARK 620 3 HOH B 340 O 101.4 117.3 REMARK 620 N 1 2 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA B 205 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH B 322 O REMARK 620 2 HOH B 346 O 72.6 REMARK 620 3 HOH D 221 O 123.6 57.5 REMARK 620 N 1 2 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue NA A 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue NA A 202 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue NA B 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue NA B 202 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue NA B 203 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue NA B 204 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue NA B 205 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue NA B 206 DBREF 4YY2 A -2 100 PDB 4YY2 4YY2 -2 100 DBREF 4YY2 B -2 100 PDB 4YY2 4YY2 -2 100 DBREF 4YY2 C -2 100 PDB 4YY2 4YY2 -2 100 DBREF 4YY2 D -2 100 PDB 4YY2 4YY2 -2 100 SEQRES 1 A 103 GLY SER SER MET GLY LYS SER PRO THR GLU VAL LEU LEU SEQRES 2 A 103 GLU LEU ILE ALA GLU ALA SER GLY THR THR ARG GLU GLU SEQRES 3 A 103 VAL LYS GLU LYS PHE LEU LYS GLU LEU ARG LYS GLY LYS SEQRES 4 A 103 SER PRO THR GLU VAL LEU LEU GLU LEU ILE ALA GLU ALA SEQRES 5 A 103 SER GLY THR THR LYS GLU GLU VAL LYS GLU LYS PHE LEU SEQRES 6 A 103 LYS GLU LEU SER PHE GLY LYS SER PRO THR GLU VAL LEU SEQRES 7 A 103 LEU GLU LEU ILE ALA GLU ALA SER GLY THR THR LYS GLU SEQRES 8 A 103 GLU VAL LYS LYS LYS PHE TRP LYS GLU LEU SER LEU SEQRES 1 B 103 GLY SER SER MET GLY LYS SER PRO THR GLU VAL LEU LEU SEQRES 2 B 103 GLU LEU ILE ALA GLU ALA SER GLY THR THR ARG GLU GLU SEQRES 3 B 103 VAL LYS GLU LYS PHE LEU LYS GLU LEU ARG LYS GLY LYS SEQRES 4 B 103 SER PRO THR GLU VAL LEU LEU GLU LEU ILE ALA GLU ALA SEQRES 5 B 103 SER GLY THR THR LYS GLU GLU VAL LYS GLU LYS PHE LEU SEQRES 6 B 103 LYS GLU LEU SER PHE GLY LYS SER PRO THR GLU VAL LEU SEQRES 7 B 103 LEU GLU LEU ILE ALA GLU ALA SER GLY THR THR LYS GLU SEQRES 8 B 103 GLU VAL LYS LYS LYS PHE TRP LYS GLU LEU SER LEU SEQRES 1 C 103 GLY SER SER MET GLY LYS SER PRO THR GLU VAL LEU LEU SEQRES 2 C 103 GLU LEU ILE ALA GLU ALA SER GLY THR THR ARG GLU GLU SEQRES 3 C 103 VAL LYS GLU LYS PHE LEU LYS GLU LEU ARG LYS GLY LYS SEQRES 4 C 103 SER PRO THR GLU VAL LEU LEU GLU LEU ILE ALA GLU ALA SEQRES 5 C 103 SER GLY THR THR LYS GLU GLU VAL LYS GLU LYS PHE LEU SEQRES 6 C 103 LYS GLU LEU SER PHE GLY LYS SER PRO THR GLU VAL LEU SEQRES 7 C 103 LEU GLU LEU ILE ALA GLU ALA SER GLY THR THR LYS GLU SEQRES 8 C 103 GLU VAL LYS LYS LYS PHE TRP LYS GLU LEU SER LEU SEQRES 1 D 103 GLY SER SER MET GLY LYS SER PRO THR GLU VAL LEU LEU SEQRES 2 D 103 GLU LEU ILE ALA GLU ALA SER GLY THR THR ARG GLU GLU SEQRES 3 D 103 VAL LYS GLU LYS PHE LEU LYS GLU LEU ARG LYS GLY LYS SEQRES 4 D 103 SER PRO THR GLU VAL LEU LEU GLU LEU ILE ALA GLU ALA SEQRES 5 D 103 SER GLY THR THR LYS GLU GLU VAL LYS GLU LYS PHE LEU SEQRES 6 D 103 LYS GLU LEU SER PHE GLY LYS SER PRO THR GLU VAL LEU SEQRES 7 D 103 LEU GLU LEU ILE ALA GLU ALA SER GLY THR THR LYS GLU SEQRES 8 D 103 GLU VAL LYS LYS LYS PHE TRP LYS GLU LEU SER LEU HET NA A 201 1 HET NA A 202 1 HET NA B 201 1 HET NA B 202 1 HET NA B 203 1 HET NA B 204 1 HET NA B 205 1 HET NA B 206 1 HETNAM NA SODIUM ION FORMUL 5 NA 8(NA 1+) FORMUL 13 HOH *139(H2 O) HELIX 1 AA1 SER A 4 GLY A 18 1 15 HELIX 2 AA2 THR A 20 LYS A 34 1 15 HELIX 3 AA3 SER A 37 GLY A 51 1 15 HELIX 4 AA4 THR A 53 PHE A 67 1 15 HELIX 5 AA5 SER A 70 GLY A 84 1 15 HELIX 6 AA6 THR A 86 SER A 99 1 14 HELIX 7 AA7 SER B 4 ALA B 16 1 13 HELIX 8 AA8 THR B 20 LYS B 34 1 15 HELIX 9 AA9 SER B 37 GLY B 51 1 15 HELIX 10 AB1 THR B 53 GLY B 68 1 16 HELIX 11 AB2 SER B 70 GLY B 84 1 15 HELIX 12 AB3 THR B 86 LEU B 100 1 15 HELIX 13 AB4 SER C 4 SER C 17 1 14 HELIX 14 AB5 THR C 20 LYS C 34 1 15 HELIX 15 AB6 SER C 37 GLY C 51 1 15 HELIX 16 AB7 THR C 53 PHE C 67 1 15 HELIX 17 AB8 SER C 70 GLY C 84 1 15 HELIX 18 AB9 THR C 86 LEU C 100 1 15 HELIX 19 AC1 SER D 4 GLY D 18 1 15 HELIX 20 AC2 THR D 20 LYS D 34 1 15 HELIX 21 AC3 SER D 37 GLY D 51 1 15 HELIX 22 AC4 THR D 53 PHE D 67 1 15 HELIX 23 AC5 SER D 70 GLY D 84 1 15 HELIX 24 AC6 THR D 86 LEU D 100 1 15 LINK NA NA A 201 O HOH A 332 1555 1555 2.02 LINK NA NA B 203 O HOH B 330 1555 1455 2.21 LINK NA NA B 204 O HOH B 337 1555 1455 2.31 LINK NA NA B 204 O HOH B 339 1555 1455 2.46 LINK NA NA B 204 O HOH B 340 1555 1555 2.30 LINK NA NA B 205 O HOH B 322 1555 1555 3.01 LINK NA NA B 205 O HOH B 346 1555 1555 2.94 LINK NA NA B 205 O HOH D 221 1555 3545 2.66 LINK NA NA B 206 O HOH B 340 1555 1555 2.01 SITE 1 AC1 1 HOH A 332 SITE 1 AC2 3 GLU A 23 HOH A 312 HOH A 335 SITE 1 AC3 3 HOH A 336 THR B 72 HOH B 308 SITE 1 AC4 3 HOH A 337 SER B 70 HOH B 335 SITE 1 AC5 3 THR B 20 HOH B 330 HOH D 225 SITE 1 AC6 3 HOH B 337 HOH B 339 HOH B 340 SITE 1 AC7 3 HOH B 322 HOH B 346 HOH D 221 SITE 1 AC8 2 HOH B 333 HOH B 340 CRYST1 37.139 68.603 152.357 90.00 90.00 90.00 P 21 21 21 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.026926 0.000000 0.000000 0.00000 SCALE2 0.000000 0.014577 0.000000 0.00000 SCALE3 0.000000 0.000000 0.006564 0.00000