HEADER IMMUNE SYSTEM 23-MAR-15 4YY9 TITLE THE STRUCTURE OF HEMAGGLUTININ FROM A H6N1 INFLUENZA VIRUS TITLE 2 (A/TAIWAN/2/2013) COMPND MOL_ID: 1; COMPND 2 MOLECULE: HA1; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES; COMPND 5 MOL_ID: 2; COMPND 6 MOLECULE: HA2; COMPND 7 CHAIN: B; COMPND 8 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: UNIDENTIFIED INFLUENZA VIRUS; SOURCE 3 ORGANISM_TAXID: 119212; SOURCE 4 EXPRESSION_SYSTEM: INSECT CELL EXPRESSION VECTOR PTIE1; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 266783; SOURCE 6 MOL_ID: 2; SOURCE 7 ORGANISM_SCIENTIFIC: UNIDENTIFIED INFLUENZA VIRUS; SOURCE 8 ORGANISM_TAXID: 119212; SOURCE 9 EXPRESSION_SYSTEM: INSECT CELL EXPRESSION VECTOR PTIE1; SOURCE 10 EXPRESSION_SYSTEM_TAXID: 266783 KEYWDS HEMAGGLUTININ, IMMUNE SYSTEM EXPDTA X-RAY DIFFRACTION AUTHOR F.WANG,J.QI,Y.BI,W.ZHANG,M.WANG,M.WANG,J.LIU,J.YAN,Y.SHI,G.F.GAO REVDAT 2 29-JUL-20 4YY9 1 COMPND JRNL REMARK HETNAM REVDAT 2 2 1 LINK SITE ATOM REVDAT 1 13-APR-16 4YY9 0 JRNL AUTH F.WANG,J.QI,Y.BI,W.ZHANG,M.WANG,M.WANG,J.LIU,J.YAN,Y.SHI, JRNL AUTH 2 G.F.GAO JRNL TITL STRUCTURE OF HEMAGGLUTININ FROM A H6N1 INFLUENZA VIRUS JRNL TITL 2 (A/TAIWAN/2/2013) AT 2.6 ANGSTROMS RESOLUTION JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 2.60 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.8.3_1479 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.60 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 47.23 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.380 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 3 NUMBER OF REFLECTIONS : 36901 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.193 REMARK 3 R VALUE (WORKING SET) : 0.191 REMARK 3 FREE R VALUE : 0.225 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1844 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 47.2338 - 6.1120 0.99 2710 166 0.2266 0.2553 REMARK 3 2 6.1120 - 4.8528 1.00 2706 142 0.1921 0.1947 REMARK 3 3 4.8528 - 4.2399 1.00 2673 166 0.1604 0.1806 REMARK 3 4 4.2399 - 3.8524 1.00 2695 158 0.1659 0.2106 REMARK 3 5 3.8524 - 3.5764 1.00 2698 132 0.1831 0.2439 REMARK 3 6 3.5764 - 3.3656 1.00 2709 141 0.1952 0.2635 REMARK 3 7 3.3656 - 3.1971 1.00 2719 130 0.1945 0.2182 REMARK 3 8 3.1971 - 3.0579 1.00 2678 152 0.1884 0.2053 REMARK 3 9 3.0579 - 2.9402 1.00 2694 130 0.1944 0.2354 REMARK 3 10 2.9402 - 2.8388 1.00 2702 129 0.2044 0.2654 REMARK 3 11 2.8388 - 2.7500 1.00 2701 136 0.2055 0.2458 REMARK 3 12 2.7500 - 2.6714 1.00 2710 124 0.2012 0.2332 REMARK 3 13 2.6714 - 2.6011 0.99 2662 138 0.2187 0.2624 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.280 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 22.730 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.007 4038 REMARK 3 ANGLE : 1.047 5477 REMARK 3 CHIRALITY : 0.044 601 REMARK 3 PLANARITY : 0.004 706 REMARK 3 DIHEDRAL : 14.001 1466 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 1 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: ALL REMARK 3 ORIGIN FOR THE GROUP (A): -40.7218 39.6464 -8.5359 REMARK 3 T TENSOR REMARK 3 T11: 0.1628 T22: 0.2450 REMARK 3 T33: 0.2604 T12: -0.0275 REMARK 3 T13: -0.0219 T23: 0.0125 REMARK 3 L TENSOR REMARK 3 L11: 0.2149 L22: 0.2240 REMARK 3 L33: 0.9112 L12: -0.0193 REMARK 3 L13: -0.0681 L23: 0.0394 REMARK 3 S TENSOR REMARK 3 S11: -0.0208 S12: -0.0404 S13: 0.0090 REMARK 3 S21: 0.0559 S22: 0.0012 S23: -0.0653 REMARK 3 S31: -0.0244 S32: 0.2047 S33: 0.0000 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4YY9 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ. REMARK 100 THE DEPOSITION ID IS D_1000208274. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 10-SEP-13 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : NULL REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRF REMARK 200 BEAMLINE : BL17U REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.07138 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : SCALA REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 36901 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.600 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 7.300 REMARK 200 R MERGE (I) : 0.10900 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 19.4000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.60 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.69 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.9 REMARK 200 DATA REDUNDANCY IN SHELL : 7.60 REMARK 200 R MERGE FOR SHELL (I) : 0.55400 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 5.300 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 77.91 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 5.57 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.2M AMMONIUM ACETATE, 0.1M SODIUM REMARK 280 ACETATE PH4.0, 15%(W/V) PEG4000, VAPOR DIFFUSION, SITTING DROP, REMARK 280 TEMPERATURE 291.15K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 63 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z REMARK 290 3555 -X+Y,-X,Z REMARK 290 4555 -X,-Y,Z+1/2 REMARK 290 5555 Y,-X+Y,Z+1/2 REMARK 290 6555 X-Y,X,Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 81.92100 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 81.92100 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 81.92100 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: HEXAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: HEXAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 31850 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 59940 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -128.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -0.500000 -0.866025 0.000000 -56.94900 REMARK 350 BIOMT2 2 0.866025 -0.500000 0.000000 98.63856 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 3 -0.500000 0.866025 0.000000 -113.89800 REMARK 350 BIOMT2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 350 BIOMT3 3 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 804 LIES ON A SPECIAL POSITION. REMARK 375 HOH B 658 LIES ON A SPECIAL POSITION. REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 THR A 121 CG2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 NZ LYS A 37 O HOH A 701 1.92 REMARK 500 O HOH A 776 O HOH A 799 1.96 REMARK 500 OD1 ASN B 386 O HOH B 601 2.03 REMARK 500 OD2 ASP A 185 O HOH A 702 2.04 REMARK 500 O GLY A 130 O HOH A 703 2.05 REMARK 500 O HOH A 805 O HOH B 653 2.07 REMARK 500 OG1 THR A 240 O HOH A 704 2.08 REMARK 500 ND1 HIS B 397 O HOH B 602 2.08 REMARK 500 O HOH B 665 O HOH B 678 2.09 REMARK 500 O HOH A 794 O HOH B 608 2.11 REMARK 500 O PHE B 392 O HOH B 603 2.12 REMARK 500 O HOH B 624 O HOH B 679 2.13 REMARK 500 O HOH B 664 O HOH B 667 2.13 REMARK 500 OD2 ASP A 51 O HOH A 705 2.14 REMARK 500 O ASP B 348 NH1 ARG B 367 2.16 REMARK 500 NE ARG A 315 O HOH A 706 2.16 REMARK 500 O HOH B 672 O HOH B 680 2.17 REMARK 500 NE2 GLN A 172 O HOH A 707 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 NH2 ARG B 456 O ASP B 461 2565 2.16 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 LYS A 153 CB LYS A 153 CG -0.169 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LYS A 53 -125.64 53.98 REMARK 500 CYS A 135 69.11 -118.31 REMARK 500 SER A 143 -157.80 -130.73 REMARK 500 THR A 154 -165.79 -78.67 REMARK 500 ASP A 155 -63.06 -13.07 REMARK 500 SER A 156 -5.03 176.06 REMARK 500 TYR A 159 101.84 -59.63 REMARK 500 THR A 204 -166.63 -125.98 REMARK 500 ALA A 216 148.79 -173.82 REMARK 500 TRP A 253 -70.32 -104.31 REMARK 500 LYS A 263 -141.05 -78.28 REMARK 500 ALA B 334 -61.69 -94.45 REMARK 500 ASN B 389 34.33 -95.69 REMARK 500 ARG B 456 -122.91 60.30 REMARK 500 ASP B 474 -165.27 -75.57 REMARK 500 LYS B 490 -163.87 -70.03 REMARK 500 REMARK 500 REMARK: NULL REMARK 615 REMARK 615 ZERO OCCUPANCY ATOM REMARK 615 THE FOLLOWING RESIDUES HAVE ATOMS MODELED WITH ZERO REMARK 615 OCCUPANCY. THE LOCATION AND PROPERTIES OF THESE ATOMS REMARK 615 MAY NOT BE RELIABLE. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 615 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 615 M RES C SSEQI REMARK 615 NAG C 1 REMARK 615 NAG C 2 REMARK 615 BMA C 3 REMARK 615 NAG A 601 REMARK 615 NAG A 602 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4YY1 RELATED DB: PDB REMARK 900 RELATED ID: 4YY0 RELATED DB: PDB REMARK 900 RELATED ID: 4YY7 RELATED DB: PDB REMARK 900 RELATED ID: 4YYA RELATED DB: PDB REMARK 900 RELATED ID: 4YYB RELATED DB: PDB REMARK 999 REMARK 999 SEQUENCE REMARK 999 THE SEQUENCE OF THIS PROTEIN WAS NOT AVAILABLE AT THE UNIPROT REMARK 999 KNOWLEDGEBASE DATABASE (UNIPROTKB) AT THE TIME OF DEPOSITION. DBREF 4YY9 A 1 325 PDB 4YY9 4YY9 1 325 DBREF 4YY9 B 330 491 PDB 4YY9 4YY9 330 491 SEQRES 1 A 325 ASP LYS ILE CYS ILE GLY TYR HIS ALA ASN ASN SER THR SEQRES 2 A 325 THR GLN VAL ASP THR LEU LEU GLU LYS ASN VAL THR VAL SEQRES 3 A 325 THR HIS SER VAL GLU LEU LEU GLU ASN GLN LYS GLU LYS SEQRES 4 A 325 ARG PHE CYS LYS ILE MET ASN LYS ALA PRO LEU ASP LEU SEQRES 5 A 325 LYS ASP CYS THR ILE GLU GLY TRP ILE LEU GLY ASN PRO SEQRES 6 A 325 LYS CYS ASP LEU LEU LEU GLY ASP GLN SER TRP SER TYR SEQRES 7 A 325 ILE VAL GLU ARG PRO ASN ALA GLN ASN GLY ILE CYS TYR SEQRES 8 A 325 PRO GLY VAL LEU ASN GLU LEU GLU GLU LEU LYS ALA PHE SEQRES 9 A 325 ILE GLY SER GLY GLU ARG VAL GLU ARG PHE GLU MET PHE SEQRES 10 A 325 PRO LYS SER THR TRP ALA GLY VAL ASP THR SER ARG GLY SEQRES 11 A 325 VAL THR ASN ALA CYS PRO SER TYR THR LEU ASP SER SER SEQRES 12 A 325 PHE TYR ARG ASN LEU VAL TRP LEU VAL LYS THR ASP SER SEQRES 13 A 325 ALA THR TYR PRO VAL ILE LYS GLY THR TYR ASN ASN THR SEQRES 14 A 325 GLY THR GLN PRO ILE LEU TYR PHE TRP GLY VAL HIS HIS SEQRES 15 A 325 PRO LEU ASP THR THR VAL GLN ASP ASN LEU TYR GLY SER SEQRES 16 A 325 GLY ASP LYS TYR VAL ARG MET GLY THR GLU SER MET ASN SEQRES 17 A 325 PHE ALA LYS SER PRO GLU ILE ALA ALA ARG PRO ALA VAL SEQRES 18 A 325 ASN GLY GLN ARG SER ARG ILE ASP TYR TYR TRP SER VAL SEQRES 19 A 325 LEU ARG PRO GLY GLU THR LEU ASN VAL GLU SER ASN GLY SEQRES 20 A 325 ASN LEU ILE ALA PRO TRP TYR ALA TYR LYS PHE VAL SER SEQRES 21 A 325 THR ASN LYS LYS GLY ALA VAL PHE LYS SER ASP LEU PRO SEQRES 22 A 325 ILE GLU ASN CYS ASP ALA THR CYS GLN THR ILE THR GLY SEQRES 23 A 325 VAL LEU ARG THR ASN LYS THR PHE GLN ASN VAL SER PRO SEQRES 24 A 325 LEU TRP ILE GLY GLU CYS PRO LYS TYR VAL LYS SER GLU SEQRES 25 A 325 SER LEU ARG LEU ALA THR GLY LEU ARG ASN VAL PRO GLN SEQRES 1 B 162 GLY ILE PHE GLY ALA ILE ALA GLY PHE ILE GLU GLY GLY SEQRES 2 B 162 TRP THR GLY MET ILE ASP GLY TRP TYR GLY TYR HIS HIS SEQRES 3 B 162 GLU ASN SER GLN GLY SER GLY TYR ALA ALA ASP ARG GLU SEQRES 4 B 162 SER THR GLN LYS ALA ILE ASP GLY ILE THR ASN LYS VAL SEQRES 5 B 162 ASN SER ILE ILE ASN LYS MET ASN THR GLN PHE GLU ALA SEQRES 6 B 162 VAL ASP HIS GLU PHE SER ASN LEU GLU ARG ARG ILE GLY SEQRES 7 B 162 ASN LEU ASN LYS ARG MET GLU ASP GLY PHE LEU ASP VAL SEQRES 8 B 162 TRP THR TYR ASN ALA GLU LEU LEU VAL LEU LEU GLU ASN SEQRES 9 B 162 GLU ARG THR LEU ASP LEU HIS ASP ALA ASN VAL LYS ASN SEQRES 10 B 162 LEU TYR GLU LYS VAL LYS SER GLN LEU ARG ASP ASN ALA SEQRES 11 B 162 ASN ASP LEU GLY ASN GLY CYS PHE GLU PHE TRP HIS LYS SEQRES 12 B 162 CYS ASP ASN GLU CYS MET GLU SER VAL LYS ASN GLY THR SEQRES 13 B 162 TYR ASP TYR PRO LYS TYR HET NAG C 1 14 HET NAG C 2 14 HET BMA C 3 11 HET NAG A 601 14 HET NAG A 602 14 HETNAM NAG 2-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE HETNAM BMA BETA-D-MANNOPYRANOSE FORMUL 3 NAG 4(C8 H15 N O6) FORMUL 3 BMA C6 H12 O6 FORMUL 6 HOH *188(H2 O) HELIX 1 AA1 THR A 56 GLY A 63 1 8 HELIX 2 AA2 ASN A 64 ASP A 68 5 5 HELIX 3 AA3 GLU A 97 SER A 107 1 11 HELIX 4 AA4 PRO A 118 TRP A 122 5 5 HELIX 5 AA5 ASP A 185 GLY A 194 1 10 HELIX 6 AA6 ASP B 366 MET B 388 1 23 HELIX 7 AA7 GLU B 403 ARG B 456 1 54 HELIX 8 AA8 ASP B 474 ASN B 483 1 10 SHEET 1 AA1 5 GLY B 360 ALA B 365 0 SHEET 2 AA1 5 TYR B 351 ASN B 357 -1 N TYR B 353 O ALA B 364 SHEET 3 AA1 5 LYS A 2 TYR A 7 -1 N CYS A 4 O HIS B 354 SHEET 4 AA1 5 CYS B 466 PHE B 469 -1 O PHE B 467 N ILE A 3 SHEET 5 AA1 5 ALA B 459 ASP B 461 -1 N ASN B 460 O GLU B 468 SHEET 1 AA2 2 GLN A 15 VAL A 16 0 SHEET 2 AA2 2 VAL A 24 THR A 25 -1 O VAL A 24 N VAL A 16 SHEET 1 AA3 2 SER A 29 GLU A 31 0 SHEET 2 AA3 2 ARG A 315 ALA A 317 -1 O LEU A 316 N VAL A 30 SHEET 1 AA4 3 LEU A 33 GLU A 34 0 SHEET 2 AA4 3 PHE A 294 GLN A 295 1 O PHE A 294 N GLU A 34 SHEET 3 AA4 3 LYS A 307 TYR A 308 1 O LYS A 307 N GLN A 295 SHEET 1 AA5 2 PHE A 41 ILE A 44 0 SHEET 2 AA5 2 ILE A 274 ALA A 279 1 O CYS A 277 N LYS A 43 SHEET 1 AA6 3 LEU A 50 ASP A 51 0 SHEET 2 AA6 3 ILE A 79 GLU A 81 1 O VAL A 80 N LEU A 50 SHEET 3 AA6 3 VAL A 267 LYS A 269 1 O PHE A 268 N ILE A 79 SHEET 1 AA7 6 GLN A 74 SER A 75 0 SHEET 2 AA7 6 GLY A 108 GLU A 115 -1 O VAL A 111 N GLN A 74 SHEET 3 AA7 6 TYR A 254 SER A 260 -1 O LYS A 257 N GLU A 112 SHEET 4 AA7 6 ILE A 174 HIS A 182 -1 N LEU A 175 O TYR A 256 SHEET 5 AA7 6 ARG A 227 LEU A 235 -1 O TYR A 231 N TRP A 178 SHEET 6 AA7 6 GLY A 93 LEU A 95 1 N VAL A 94 O TYR A 230 SHEET 1 AA8 6 GLN A 74 SER A 75 0 SHEET 2 AA8 6 GLY A 108 GLU A 115 -1 O VAL A 111 N GLN A 74 SHEET 3 AA8 6 TYR A 254 SER A 260 -1 O LYS A 257 N GLU A 112 SHEET 4 AA8 6 ILE A 174 HIS A 182 -1 N LEU A 175 O TYR A 256 SHEET 5 AA8 6 LEU A 249 PRO A 252 -1 O ILE A 250 N GLY A 179 SHEET 6 AA8 6 LEU A 148 TRP A 150 -1 N VAL A 149 O ALA A 251 SHEET 1 AA9 4 ILE A 162 ASN A 167 0 SHEET 2 AA9 4 THR A 240 SER A 245 -1 O SER A 245 N ILE A 162 SHEET 3 AA9 4 VAL A 200 GLY A 203 -1 N ARG A 201 O GLU A 244 SHEET 4 AA9 4 ASN A 208 LYS A 211 -1 O PHE A 209 N MET A 202 SHEET 1 AB1 3 GLY A 286 VAL A 287 0 SHEET 2 AB1 3 CYS A 281 THR A 283 -1 N THR A 283 O GLY A 286 SHEET 3 AB1 3 TRP A 301 GLY A 303 -1 O ILE A 302 N GLN A 282 SSBOND 1 CYS A 4 CYS B 466 1555 1555 2.05 SSBOND 2 CYS A 42 CYS A 277 1555 1555 2.04 SSBOND 3 CYS A 55 CYS A 67 1555 1555 2.05 SSBOND 4 CYS A 90 CYS A 135 1555 1555 2.05 SSBOND 5 CYS A 281 CYS A 305 1555 1555 2.04 SSBOND 6 CYS B 473 CYS B 477 1555 1555 2.05 LINK ND2 ASN A 23 C1 NAG A 601 1555 1555 1.44 LINK ND2 ASN A 167 C1 NAG A 602 1555 1555 1.42 LINK ND2 ASN B 483 C1 NAG C 1 1555 1555 1.45 LINK O4 NAG C 1 C1 NAG C 2 1555 1555 1.45 LINK O4 NAG C 2 C1 BMA C 3 1555 1555 1.45 CRYST1 113.898 113.898 163.842 90.00 90.00 120.00 P 63 6 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.008780 0.005069 0.000000 0.00000 SCALE2 0.000000 0.010138 0.000000 0.00000 SCALE3 0.000000 0.000000 0.006103 0.00000