HEADER TOXIN 24-MAR-15 4YZ7 TITLE CRYSTAL STRUCTURE OF PIRATOXIN I (PRTX-I) COMPLEXED TO ARISTOLOCHIC TITLE 2 ACID COMPND MOL_ID: 1; COMPND 2 MOLECULE: BASIC PHOSPHOLIPASE A2 HOMOLOG PIRATOXIN-1; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: SVPLA2 HOMOLOG,MYOTOXIN SIV-SP5,PIRATOXIN-I,PRTX-I SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: BOTHROPS PIRAJAI; SOURCE 3 ORGANISM_COMMON: PIRAJA'S LANCE HEAD; SOURCE 4 ORGANISM_TAXID: 113192 KEYWDS TOXIN, PHOSPHOLIPASE A2, PHOSPHOLIPASE A2-LIKE, INHIBITOR EXPDTA X-RAY DIFFRACTION AUTHOR C.A.H.FERNANDES,M.R.M.FONTES REVDAT 5 27-SEP-23 4YZ7 1 REMARK REVDAT 4 01-JAN-20 4YZ7 1 REMARK REVDAT 3 17-APR-19 4YZ7 1 REMARK REVDAT 2 01-NOV-17 4YZ7 1 REMARK REVDAT 1 05-AUG-15 4YZ7 0 JRNL AUTH C.A.FERNANDES,F.F.CARDOSO,W.G.CAVALCANTE,A.M.SOARES, JRNL AUTH 2 M.DAL-PAI,M.GALLACCI,M.R.FONTES JRNL TITL STRUCTURAL BASIS FOR THE INHIBITION OF A PHOSPHOLIPASE JRNL TITL 2 A2-LIKE TOXIN BY CAFFEIC AND ARISTOLOCHIC ACIDS. JRNL REF PLOS ONE V. 10 33370 2015 JRNL REFN ESSN 1932-6203 JRNL PMID 26192963 JRNL DOI 10.1371/JOURNAL.PONE.0133370 REMARK 2 REMARK 2 RESOLUTION. 1.96 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.8.2_1309 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.96 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 25.61 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 0.200 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.2 REMARK 3 NUMBER OF REFLECTIONS : 15842 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.176 REMARK 3 R VALUE (WORKING SET) : 0.173 REMARK 3 FREE R VALUE : 0.235 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.960 REMARK 3 FREE R VALUE TEST SET COUNT : 786 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 25.6121 - 3.5568 0.99 2627 153 0.1655 0.2025 REMARK 3 2 3.5568 - 2.8243 0.99 2532 121 0.1717 0.2490 REMARK 3 3 2.8243 - 2.4676 0.99 2474 144 0.1781 0.2664 REMARK 3 4 2.4676 - 2.2422 0.99 2513 109 0.1728 0.2503 REMARK 3 5 2.2422 - 2.0815 0.99 2461 132 0.1780 0.2564 REMARK 3 6 2.0815 - 1.9589 0.99 2449 127 0.2120 0.2891 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.210 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 23.510 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.007 1854 REMARK 3 ANGLE : 1.138 2499 REMARK 3 CHIRALITY : 0.072 262 REMARK 3 PLANARITY : 0.005 320 REMARK 3 DIHEDRAL : 12.242 646 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 18 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 1 THROUGH 21 ) REMARK 3 ORIGIN FOR THE GROUP (A): 26.5571 3.3937 15.0875 REMARK 3 T TENSOR REMARK 3 T11: 0.2913 T22: 0.2163 REMARK 3 T33: 0.2107 T12: -0.0077 REMARK 3 T13: 0.1117 T23: -0.0690 REMARK 3 L TENSOR REMARK 3 L11: 1.8288 L22: 3.1716 REMARK 3 L33: 0.7788 L12: 1.2142 REMARK 3 L13: 0.6825 L23: -0.4643 REMARK 3 S TENSOR REMARK 3 S11: -0.1177 S12: -0.1812 S13: -0.2351 REMARK 3 S21: -0.7790 S22: 0.2378 S23: -0.8107 REMARK 3 S31: -0.3856 S32: -0.0214 S33: -0.0536 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 22 THROUGH 38 ) REMARK 3 ORIGIN FOR THE GROUP (A): 11.2206 3.8794 16.6083 REMARK 3 T TENSOR REMARK 3 T11: 0.1744 T22: 0.2738 REMARK 3 T33: 0.2594 T12: 0.0215 REMARK 3 T13: -0.0614 T23: -0.0513 REMARK 3 L TENSOR REMARK 3 L11: 3.6352 L22: 3.4475 REMARK 3 L33: 1.8875 L12: -1.0199 REMARK 3 L13: -1.9931 L23: -1.0370 REMARK 3 S TENSOR REMARK 3 S11: 0.1351 S12: 0.0988 S13: 0.6026 REMARK 3 S21: -0.2972 S22: -0.2019 S23: 0.5454 REMARK 3 S31: 0.1954 S32: -0.5294 S33: 0.0696 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 39 THROUGH 52 ) REMARK 3 ORIGIN FOR THE GROUP (A): 15.3262 9.1266 21.0977 REMARK 3 T TENSOR REMARK 3 T11: 0.2196 T22: 0.2395 REMARK 3 T33: 0.1676 T12: 0.0221 REMARK 3 T13: -0.0299 T23: -0.0323 REMARK 3 L TENSOR REMARK 3 L11: 1.9765 L22: 5.7429 REMARK 3 L33: 2.5120 L12: -0.5622 REMARK 3 L13: -0.0233 L23: 0.0321 REMARK 3 S TENSOR REMARK 3 S11: -0.0130 S12: -0.0828 S13: 0.0469 REMARK 3 S21: -0.3438 S22: -0.0621 S23: 0.2394 REMARK 3 S31: -0.2985 S32: -0.8000 S33: 0.0648 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 53 THROUGH 62 ) REMARK 3 ORIGIN FOR THE GROUP (A): 21.9071 20.5261 15.3477 REMARK 3 T TENSOR REMARK 3 T11: 0.5456 T22: 0.1943 REMARK 3 T33: 0.3524 T12: 0.1478 REMARK 3 T13: 0.0677 T23: 0.0300 REMARK 3 L TENSOR REMARK 3 L11: 3.1014 L22: 2.9041 REMARK 3 L33: 2.3477 L12: 1.6196 REMARK 3 L13: 0.3258 L23: 2.3576 REMARK 3 S TENSOR REMARK 3 S11: 0.0245 S12: 0.1492 S13: 0.9273 REMARK 3 S21: -1.0223 S22: 0.2262 S23: -0.3780 REMARK 3 S31: -1.1841 S32: -0.0525 S33: 0.0771 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 63 THROUGH 67 ) REMARK 3 ORIGIN FOR THE GROUP (A): 32.9214 14.3362 17.7117 REMARK 3 T TENSOR REMARK 3 T11: 0.3668 T22: 0.2142 REMARK 3 T33: 0.5102 T12: -0.0345 REMARK 3 T13: 0.2371 T23: 0.0580 REMARK 3 L TENSOR REMARK 3 L11: 4.2643 L22: 3.8851 REMARK 3 L33: 5.8943 L12: 3.6280 REMARK 3 L13: -2.1221 L23: 0.1593 REMARK 3 S TENSOR REMARK 3 S11: 0.0482 S12: 0.4239 S13: 0.3908 REMARK 3 S21: -0.0222 S22: 0.2233 S23: -0.5206 REMARK 3 S31: -0.6520 S32: 0.4284 S33: 0.2601 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 68 THROUGH 72 ) REMARK 3 ORIGIN FOR THE GROUP (A): 36.5502 4.5719 24.8709 REMARK 3 T TENSOR REMARK 3 T11: 0.2324 T22: 0.3013 REMARK 3 T33: 0.5802 T12: -0.0266 REMARK 3 T13: 0.0285 T23: -0.1169 REMARK 3 L TENSOR REMARK 3 L11: 0.3151 L22: 0.7062 REMARK 3 L33: 1.5659 L12: 0.2414 REMARK 3 L13: -0.1288 L23: -0.9778 REMARK 3 S TENSOR REMARK 3 S11: 0.1169 S12: -0.2028 S13: 0.2744 REMARK 3 S21: 0.3992 S22: -0.1837 S23: 0.0148 REMARK 3 S31: -0.2721 S32: 0.5829 S33: 0.2878 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 73 THROUGH 79 ) REMARK 3 ORIGIN FOR THE GROUP (A): 32.4513 17.3725 22.7390 REMARK 3 T TENSOR REMARK 3 T11: 0.2449 T22: 0.2123 REMARK 3 T33: 0.7921 T12: -0.0692 REMARK 3 T13: -0.0289 T23: -0.0273 REMARK 3 L TENSOR REMARK 3 L11: 0.2343 L22: 0.2138 REMARK 3 L33: 0.6062 L12: -0.1168 REMARK 3 L13: -0.1945 L23: 0.3616 REMARK 3 S TENSOR REMARK 3 S11: -0.0456 S12: -0.1342 S13: 0.9351 REMARK 3 S21: -0.1259 S22: -0.4277 S23: -0.3685 REMARK 3 S31: -0.4798 S32: -0.0622 S33: 0.2721 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 80 THROUGH 98 ) REMARK 3 ORIGIN FOR THE GROUP (A): 25.0731 11.2736 23.1391 REMARK 3 T TENSOR REMARK 3 T11: 0.1650 T22: 0.1683 REMARK 3 T33: 0.2623 T12: 0.0191 REMARK 3 T13: -0.0249 T23: -0.0333 REMARK 3 L TENSOR REMARK 3 L11: 1.5433 L22: 1.9663 REMARK 3 L33: 1.1919 L12: 0.4157 REMARK 3 L13: 0.2717 L23: 1.1666 REMARK 3 S TENSOR REMARK 3 S11: -0.0720 S12: -0.1300 S13: 0.3673 REMARK 3 S21: 0.0519 S22: -0.1113 S23: -0.2343 REMARK 3 S31: -0.2125 S32: -0.0092 S33: 0.0619 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 99 THROUGH 107 ) REMARK 3 ORIGIN FOR THE GROUP (A): 16.1438 -5.7523 19.5151 REMARK 3 T TENSOR REMARK 3 T11: 0.3099 T22: 0.2326 REMARK 3 T33: 0.2148 T12: -0.0064 REMARK 3 T13: -0.0095 T23: 0.0319 REMARK 3 L TENSOR REMARK 3 L11: 0.7249 L22: 3.4661 REMARK 3 L33: 3.4377 L12: 0.0892 REMARK 3 L13: -0.0545 L23: 0.7995 REMARK 3 S TENSOR REMARK 3 S11: 0.0750 S12: -0.0651 S13: -0.1307 REMARK 3 S21: -0.2566 S22: -0.0506 S23: 0.5971 REMARK 3 S31: 0.7620 S32: 0.0372 S33: -0.1336 REMARK 3 TLS GROUP : 10 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 108 THROUGH 114 ) REMARK 3 ORIGIN FOR THE GROUP (A): 9.7756 -0.9486 10.2010 REMARK 3 T TENSOR REMARK 3 T11: 0.2933 T22: 0.3178 REMARK 3 T33: -0.0033 T12: -0.0564 REMARK 3 T13: -0.0343 T23: -0.0731 REMARK 3 L TENSOR REMARK 3 L11: 0.3090 L22: 3.5869 REMARK 3 L33: 3.0761 L12: 1.0462 REMARK 3 L13: 0.1635 L23: 0.6645 REMARK 3 S TENSOR REMARK 3 S11: -0.0659 S12: 0.1397 S13: 0.1636 REMARK 3 S21: 0.1945 S22: -0.1123 S23: 0.4719 REMARK 3 S31: -0.2127 S32: -0.4434 S33: 0.4925 REMARK 3 TLS GROUP : 11 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 115 THROUGH 121 ) REMARK 3 ORIGIN FOR THE GROUP (A): 4.5558 9.8457 20.5945 REMARK 3 T TENSOR REMARK 3 T11: 0.1494 T22: 0.4100 REMARK 3 T33: 0.3918 T12: 0.0334 REMARK 3 T13: -0.0770 T23: -0.0946 REMARK 3 L TENSOR REMARK 3 L11: 8.2929 L22: 5.0691 REMARK 3 L33: 3.1277 L12: 1.9453 REMARK 3 L13: -0.0553 L23: -3.8101 REMARK 3 S TENSOR REMARK 3 S11: 0.2645 S12: -0.4948 S13: 0.3444 REMARK 3 S21: 0.6447 S22: -0.2128 S23: 0.5657 REMARK 3 S31: -0.1449 S32: -0.9713 S33: 0.8626 REMARK 3 TLS GROUP : 12 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 1 THROUGH 13 ) REMARK 3 ORIGIN FOR THE GROUP (A): 6.5485 6.2603 -0.6971 REMARK 3 T TENSOR REMARK 3 T11: 0.1739 T22: 0.2844 REMARK 3 T33: 0.1650 T12: 0.0339 REMARK 3 T13: -0.0177 T23: 0.0195 REMARK 3 L TENSOR REMARK 3 L11: 1.7172 L22: 0.5462 REMARK 3 L33: 1.3992 L12: 0.3756 REMARK 3 L13: 1.1035 L23: -0.3329 REMARK 3 S TENSOR REMARK 3 S11: -0.1857 S12: -0.2118 S13: 0.0784 REMARK 3 S21: 0.0280 S22: 0.1878 S23: -0.0644 REMARK 3 S31: -0.3072 S32: -0.0285 S33: -0.0262 REMARK 3 TLS GROUP : 13 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 14 THROUGH 31 ) REMARK 3 ORIGIN FOR THE GROUP (A): 17.8959 2.3796 0.1829 REMARK 3 T TENSOR REMARK 3 T11: 0.2006 T22: 0.2414 REMARK 3 T33: 0.1819 T12: -0.0280 REMARK 3 T13: -0.0272 T23: -0.0087 REMARK 3 L TENSOR REMARK 3 L11: 3.7795 L22: 1.1276 REMARK 3 L33: 2.2497 L12: 0.1793 REMARK 3 L13: -0.7543 L23: -0.5037 REMARK 3 S TENSOR REMARK 3 S11: 0.0983 S12: -0.3728 S13: 0.2194 REMARK 3 S21: 0.0985 S22: 0.0778 S23: -0.0754 REMARK 3 S31: -0.1523 S32: 0.0466 S33: -0.0034 REMARK 3 TLS GROUP : 14 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 32 THROUGH 38 ) REMARK 3 ORIGIN FOR THE GROUP (A): 25.7130 7.5010 -6.6393 REMARK 3 T TENSOR REMARK 3 T11: 0.2595 T22: 0.2205 REMARK 3 T33: 0.2522 T12: -0.0324 REMARK 3 T13: -0.0292 T23: 0.0310 REMARK 3 L TENSOR REMARK 3 L11: 2.3188 L22: 4.3700 REMARK 3 L33: 4.0408 L12: 0.7259 REMARK 3 L13: 0.2169 L23: 2.0025 REMARK 3 S TENSOR REMARK 3 S11: -0.0959 S12: -0.0202 S13: 0.2758 REMARK 3 S21: 0.3078 S22: -0.0038 S23: -0.5736 REMARK 3 S31: -0.2090 S32: -0.0603 S33: 0.0096 REMARK 3 TLS GROUP : 15 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 39 THROUGH 72 ) REMARK 3 ORIGIN FOR THE GROUP (A): 10.5494 13.0316 -4.4917 REMARK 3 T TENSOR REMARK 3 T11: 0.2277 T22: 0.2380 REMARK 3 T33: 0.1986 T12: 0.0176 REMARK 3 T13: -0.0013 T23: 0.0003 REMARK 3 L TENSOR REMARK 3 L11: 1.7760 L22: 2.5624 REMARK 3 L33: 1.2686 L12: -0.0969 REMARK 3 L13: 0.3589 L23: 0.2222 REMARK 3 S TENSOR REMARK 3 S11: -0.1040 S12: -0.2170 S13: 0.2507 REMARK 3 S21: 0.1748 S22: 0.0056 S23: 0.1514 REMARK 3 S31: -0.2407 S32: -0.1927 S33: 0.0677 REMARK 3 TLS GROUP : 16 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 73 THROUGH 79 ) REMARK 3 ORIGIN FOR THE GROUP (A): -0.1810 17.5468 -5.4502 REMARK 3 T TENSOR REMARK 3 T11: 0.3259 T22: 0.3782 REMARK 3 T33: 0.3157 T12: 0.1509 REMARK 3 T13: -0.0631 T23: -0.1123 REMARK 3 L TENSOR REMARK 3 L11: 2.2359 L22: 2.8053 REMARK 3 L33: 2.1746 L12: 1.9191 REMARK 3 L13: -0.8973 L23: 0.6709 REMARK 3 S TENSOR REMARK 3 S11: -0.0949 S12: -0.0880 S13: 0.7655 REMARK 3 S21: 0.3158 S22: -0.1039 S23: 0.6603 REMARK 3 S31: -0.5677 S32: -0.9707 S33: 0.2050 REMARK 3 TLS GROUP : 17 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 80 THROUGH 114 ) REMARK 3 ORIGIN FOR THE GROUP (A): 15.5830 5.4828 -5.2186 REMARK 3 T TENSOR REMARK 3 T11: 0.1845 T22: 0.1751 REMARK 3 T33: 0.1347 T12: -0.0493 REMARK 3 T13: -0.0040 T23: 0.0108 REMARK 3 L TENSOR REMARK 3 L11: 1.5785 L22: 1.8298 REMARK 3 L33: 2.0258 L12: -0.6621 REMARK 3 L13: -0.2520 L23: 1.1452 REMARK 3 S TENSOR REMARK 3 S11: 0.0565 S12: 0.0458 S13: 0.0618 REMARK 3 S21: 0.0718 S22: -0.1650 S23: -0.1281 REMARK 3 S31: -0.0550 S32: -0.0012 S33: 0.1621 REMARK 3 TLS GROUP : 18 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 115 THROUGH 121 ) REMARK 3 ORIGIN FOR THE GROUP (A): 28.8267 14.3255 -7.5800 REMARK 3 T TENSOR REMARK 3 T11: 0.3202 T22: 0.3062 REMARK 3 T33: 0.5126 T12: -0.0853 REMARK 3 T13: 0.0393 T23: 0.1579 REMARK 3 L TENSOR REMARK 3 L11: 0.3598 L22: 0.7071 REMARK 3 L33: 4.1074 L12: -0.4780 REMARK 3 L13: -0.2704 L23: -0.0506 REMARK 3 S TENSOR REMARK 3 S11: 0.6136 S12: -0.4235 S13: 1.1179 REMARK 3 S21: -0.8994 S22: -0.2301 S23: -0.1170 REMARK 3 S31: -0.2545 S32: 0.6282 S33: 0.1492 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4YZ7 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 25-MAR-15. REMARK 100 THE DEPOSITION ID IS D_1000208339. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 16-APR-12 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.1 REMARK 200 NUMBER OF CRYSTALS USED : NULL REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : LNLS REMARK 200 BEAMLINE : W01B-MX2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.437 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MAR CCD 165 MM REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000, HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 15848 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.950 REMARK 200 RESOLUTION RANGE LOW (A) : 25.610 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.2 REMARK 200 DATA REDUNDANCY : 3.000 REMARK 200 R MERGE (I) : 0.06300 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 5.2900 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : 98.6 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.49000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 3.230 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: 3CYL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 36.59 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 1.94 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PEG 4000, TRIS HCL PH 8.1 AND LITHIUM REMARK 280 SULFATE, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 291K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X+1/2,Y+1/2,-Z REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 34.15850 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 35.46550 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 34.15850 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 35.46550 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: DIMER CONFIRMED BY DYNAMIC LIGHT SCATTERING REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LEU A 2 CG CD1 CD2 REMARK 470 PHE A 3 CG CD1 CD2 CE1 CE2 CZ REMARK 470 LYS A 7 CG CD CE NZ REMARK 470 GLN A 11 CG CD OE1 NE2 REMARK 470 LYS A 15 CE NZ REMARK 470 LYS A 19 CD CE NZ REMARK 470 VAL A 30 CB CG1 CG2 REMARK 470 LEU A 31 CG CD1 CD2 REMARK 470 LYS A 35 CD CE NZ REMARK 470 ARG A 42 CD NE CZ NH1 NH2 REMARK 470 LYS A 52 CE NZ REMARK 470 LYS A 53 CG CD CE NZ REMARK 470 GLY A 56 O REMARK 470 LYS A 60 CG CD CE NZ REMARK 470 LYS A 61 CG CD CE NZ REMARK 470 ARG A 63 CD NE CZ NH1 NH2 REMARK 470 LYS A 69 CG CD CE NZ REMARK 470 ASP A 70 CG OD1 OD2 REMARK 470 ASN A 78 CG OD1 ND2 REMARK 470 LYS A 105 CG CD CE NZ REMARK 470 LEU A 106 CG CD1 CD2 REMARK 470 LYS A 112 CG CD CE NZ REMARK 470 PHE A 114 CG CD1 CD2 CE1 CE2 CZ REMARK 470 LYS A 116 CG CD CE NZ REMARK 470 LYS A 117 CG CD CE NZ REMARK 470 ASP A 120 OD1 OD2 REMARK 470 PHE B 3 CG CD1 CD2 CE1 CE2 CZ REMARK 470 LYS B 7 CG CD CE NZ REMARK 470 LYS B 15 CE NZ REMARK 470 LEU B 31 CG CD1 CD2 REMARK 470 LYS B 35 CG CD CE NZ REMARK 470 LYS B 52 CG CD CE NZ REMARK 470 LYS B 53 CG CD CE NZ REMARK 470 LYS B 60 CG CD CE NZ REMARK 470 LYS B 61 CG CD CE NZ REMARK 470 ARG B 63 CG CD NE CZ NH1 NH2 REMARK 470 LYS B 69 CG CD CE NZ REMARK 470 GLU B 84 CG CD OE1 OE2 REMARK 470 PHE B 114 CD1 CD2 CE1 CE2 CZ REMARK 470 LYS B 116 CG CD CE NZ REMARK 470 LYS B 117 CG CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O1 SO4 B 204 O HOH B 301 2.06 REMARK 500 O LYS B 61 O HOH B 302 2.08 REMARK 500 OE1 GLU A 98 O HOH A 301 2.13 REMARK 500 O LEU A 31 O HOH A 302 2.14 REMARK 500 O3 SO4 A 202 O HOH A 303 2.14 REMARK 500 O HOH A 344 O HOH A 370 2.15 REMARK 500 O HOH A 304 O HOH A 350 2.15 REMARK 500 O HOH B 328 O HOH B 384 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 328 O HOH B 309 1556 2.05 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ALA A 23 88.30 -154.76 REMARK 500 LEU A 31 38.97 74.59 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 381 DISTANCE = 5.97 ANGSTROMS REMARK 525 HOH A 382 DISTANCE = 5.97 ANGSTROMS REMARK 525 HOH B 391 DISTANCE = 6.50 ANGSTROMS REMARK 525 HOH B 392 DISTANCE = 7.56 ANGSTROMS REMARK 610 REMARK 610 MISSING HETEROATOM REMARK 610 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 610 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 610 I=INSERTION CODE): REMARK 610 M RES C SSEQI REMARK 610 PE4 B 201 REMARK 610 9AR B 202 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 202 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PE4 B 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue 9AR B 202 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 B 203 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 B 204 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 B 205 DBREF 4YZ7 A 1 121 UNP P58399 PA2H1_BOTPI 1 121 DBREF 4YZ7 B 1 121 UNP P58399 PA2H1_BOTPI 1 121 SEQRES 1 A 121 SER LEU PHE GLU LEU GLY LYS MET ILE LEU GLN GLU THR SEQRES 2 A 121 GLY LYS ASN PRO ALA LYS SER TYR GLY ALA TYR GLY CYS SEQRES 3 A 121 ASN CYS GLY VAL LEU GLY ARG GLY LYS PRO LYS ASP ALA SEQRES 4 A 121 THR ASP ARG CYS CYS TYR VAL HIS LYS CYS CYS TYR LYS SEQRES 5 A 121 LYS LEU THR GLY CYS ASN PRO LYS LYS ASP ARG TYR SER SEQRES 6 A 121 TYR SER TRP LYS ASP LYS THR ILE VAL CYS GLY GLU ASN SEQRES 7 A 121 ASN PRO CYS LEU LYS GLU LEU CYS GLU CYS ASP LYS ALA SEQRES 8 A 121 VAL ALA ILE CYS LEU ARG GLU ASN LEU GLY THR TYR ASN SEQRES 9 A 121 LYS LEU TYR ARG TYR HIS LEU LYS PRO PHE CYS LYS LYS SEQRES 10 A 121 ALA ASP ASP CYS SEQRES 1 B 121 SER LEU PHE GLU LEU GLY LYS MET ILE LEU GLN GLU THR SEQRES 2 B 121 GLY LYS ASN PRO ALA LYS SER TYR GLY ALA TYR GLY CYS SEQRES 3 B 121 ASN CYS GLY VAL LEU GLY ARG GLY LYS PRO LYS ASP ALA SEQRES 4 B 121 THR ASP ARG CYS CYS TYR VAL HIS LYS CYS CYS TYR LYS SEQRES 5 B 121 LYS LEU THR GLY CYS ASN PRO LYS LYS ASP ARG TYR SER SEQRES 6 B 121 TYR SER TRP LYS ASP LYS THR ILE VAL CYS GLY GLU ASN SEQRES 7 B 121 ASN PRO CYS LEU LYS GLU LEU CYS GLU CYS ASP LYS ALA SEQRES 8 B 121 VAL ALA ILE CYS LEU ARG GLU ASN LEU GLY THR TYR ASN SEQRES 9 B 121 LYS LEU TYR ARG TYR HIS LEU LYS PRO PHE CYS LYS LYS SEQRES 10 B 121 ALA ASP ASP CYS HET SO4 A 201 5 HET SO4 A 202 5 HET PE4 B 201 9 HET 9AR B 202 25 HET SO4 B 203 5 HET SO4 B 204 5 HET SO4 B 205 5 HETNAM SO4 SULFATE ION HETNAM PE4 2-{2-[2-(2-{2-[2-(2-ETHOXY-ETHOXY)-ETHOXY]-ETHOXY}- HETNAM 2 PE4 ETHOXY)-ETHOXY]-ETHOXY}-ETHANOL HETNAM 9AR 9-HYDROXY ARISTOLOCHIC ACID HETSYN PE4 POLYETHYLENE GLYCOL PEG4000 HETSYN 9AR 9-HYDROXY-8-METHOXY-6-NITRO-PHENANTHROL[3,4-D][1, HETSYN 2 9AR 3]DIOXOLE-5-CARBOXYLIC ACID FORMUL 3 SO4 5(O4 S 2-) FORMUL 5 PE4 C16 H34 O8 FORMUL 6 9AR C17 H11 N O8 FORMUL 10 HOH *174(H2 O) HELIX 1 AA1 SER A 1 GLY A 14 1 14 HELIX 2 AA2 ASN A 16 GLY A 22 1 7 HELIX 3 AA3 ASP A 38 LYS A 53 1 16 HELIX 4 AA4 ASN A 79 ASN A 99 1 21 HELIX 5 AA5 LEU A 100 TYR A 103 5 4 HELIX 6 AA6 ASN A 104 ARG A 108 5 5 HELIX 7 AA7 LEU A 111 CYS A 115 5 5 HELIX 8 AA8 LEU B 2 GLY B 14 1 13 HELIX 9 AA9 ASN B 16 GLY B 22 1 7 HELIX 10 AB1 ASP B 38 LYS B 53 1 16 HELIX 11 AB2 ASN B 79 ASN B 99 1 21 HELIX 12 AB3 LEU B 100 TYR B 103 5 4 HELIX 13 AB4 ASN B 104 ARG B 108 5 5 HELIX 14 AB5 LEU B 111 CYS B 115 5 5 SHEET 1 AA1 2 ALA A 23 TYR A 24 0 SHEET 2 AA1 2 CYS A 28 GLY A 29 -1 O CYS A 28 N TYR A 24 SHEET 1 AA2 2 SER A 67 LYS A 69 0 SHEET 2 AA2 2 THR A 72 VAL A 74 -1 O VAL A 74 N SER A 67 SHEET 1 AA3 2 ALA B 23 TYR B 24 0 SHEET 2 AA3 2 CYS B 28 GLY B 29 -1 O CYS B 28 N TYR B 24 SHEET 1 AA4 2 TYR B 66 TRP B 68 0 SHEET 2 AA4 2 ILE B 73 CYS B 75 -1 O VAL B 74 N SER B 67 SSBOND 1 CYS A 26 CYS A 115 1555 1555 2.04 SSBOND 2 CYS A 28 CYS A 44 1555 1555 2.02 SSBOND 3 CYS A 43 CYS A 95 1555 1555 2.01 SSBOND 4 CYS A 49 CYS A 121 1555 1555 2.04 SSBOND 5 CYS A 50 CYS A 88 1555 1555 2.02 SSBOND 6 CYS A 57 CYS A 81 1555 1555 2.03 SSBOND 7 CYS A 75 CYS A 86 1555 1555 2.03 SSBOND 8 CYS B 26 CYS B 115 1555 1555 2.03 SSBOND 9 CYS B 28 CYS B 44 1555 1555 2.03 SSBOND 10 CYS B 43 CYS B 95 1555 1555 2.03 SSBOND 11 CYS B 49 CYS B 121 1555 1555 2.03 SSBOND 12 CYS B 50 CYS B 88 1555 1555 2.04 SSBOND 13 CYS B 57 CYS B 81 1555 1555 2.03 SSBOND 14 CYS B 75 CYS B 86 1555 1555 2.03 SITE 1 AC1 2 ARG A 33 HOH A 351 SITE 1 AC2 7 LYS A 71 ILE A 94 ARG A 97 HOH A 303 SITE 2 AC2 7 HOH A 325 HOH A 326 HOH A 347 SITE 1 AC3 7 TYR B 21 ASN B 27 CYS B 28 GLY B 29 SITE 2 AC3 7 CYS B 44 HIS B 47 LYS B 48 SITE 1 AC4 4 LEU A 111 LEU B 10 GLN B 11 TRP B 68 SITE 1 AC5 3 LYS B 19 LYS B 105 ARG B 108 SITE 1 AC6 3 ASN B 16 LYS B 19 HOH B 301 SITE 1 AC7 3 GLY B 32 ARG B 33 HOH B 345 CRYST1 68.317 70.931 44.048 90.00 90.00 90.00 P 21 21 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.014638 0.000000 0.000000 0.00000 SCALE2 0.000000 0.014098 0.000000 0.00000 SCALE3 0.000000 0.000000 0.022703 0.00000