HEADER HYDROLASE 25-MAR-15 4YZT TITLE CRYSTAL STRUCTURE OF A TRI-MODULAR GH5 (SUBFAMILY 4) ENDO-BETA-1, 4- TITLE 2 GLUCANASE FROM BACILLUS LICHENIFORMIS COMPLEXED WITH CELLOTETRAOSE COMPND MOL_ID: 1; COMPND 2 MOLECULE: CELLULOSE HYDROLASE; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: ENDO-BETA-1,4-GLUCANASE; COMPND 5 EC: 3.2.1.4; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: BACILLUS LICHENIFORMIS; SOURCE 3 ORGANISM_TAXID: 1402; SOURCE 4 ATCC: 14580; SOURCE 5 GENE: CEL5C; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21 ROSETTA2(DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PETTRXA-1A/LIC KEYWDS ENDOGLUCANASE, GH5, TRI-MODULAR, CELLOTETRAOSE, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR M.V.LIBERATO,A.POPOV,I.POLIKARPOV REVDAT 8 27-SEP-23 4YZT 1 HETSYN LINK REVDAT 7 29-JUL-20 4YZT 1 COMPND REMARK HETNAM LINK REVDAT 7 2 1 SITE ATOM REVDAT 6 01-JAN-20 4YZT 1 REMARK REVDAT 5 17-APR-19 4YZT 1 REMARK REVDAT 4 22-NOV-17 4YZT 1 REMARK REVDAT 3 08-MAR-17 4YZT 1 JRNL REVDAT 2 02-NOV-16 4YZT 1 JRNL REVDAT 1 07-SEP-16 4YZT 0 JRNL AUTH M.V.LIBERATO,R.L.SILVEIRA,E.T.PRATES,E.A.DE ARAUJO, JRNL AUTH 2 V.O.PELLEGRINI,C.M.CAMILO,M.A.KADOWAKI,M.DE O.NETO,A.POPOV, JRNL AUTH 3 M.S.SKAF,I.POLIKARPOV JRNL TITL MOLECULAR CHARACTERIZATION OF A FAMILY 5 GLYCOSIDE HYDROLASE JRNL TITL 2 SUGGESTS AN INDUCED-FIT ENZYMATIC MECHANISM. JRNL REF SCI REP V. 6 23473 2016 JRNL REFN ESSN 2045-2322 JRNL PMID 27032335 JRNL DOI 10.1038/SREP23473 REMARK 2 REMARK 2 RESOLUTION. 1.67 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.9-1692 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.67 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 57.33 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 3 NUMBER OF REFLECTIONS : 62072 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.177 REMARK 3 R VALUE (WORKING SET) : 0.176 REMARK 3 FREE R VALUE : 0.212 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.950 REMARK 3 FREE R VALUE TEST SET COUNT : 3073 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 57.3620 - 4.6646 0.99 2921 158 0.1466 0.1754 REMARK 3 2 4.6646 - 3.7027 0.99 2740 154 0.1238 0.1437 REMARK 3 3 3.7027 - 3.2347 1.00 2742 131 0.1422 0.1624 REMARK 3 4 3.2347 - 2.9389 1.00 2719 144 0.1541 0.1810 REMARK 3 5 2.9389 - 2.7283 0.99 2717 123 0.1642 0.2054 REMARK 3 6 2.7283 - 2.5674 1.00 2705 137 0.1695 0.2264 REMARK 3 7 2.5674 - 2.4388 1.00 2663 146 0.1610 0.1965 REMARK 3 8 2.4388 - 2.3327 1.00 2674 146 0.1606 0.2201 REMARK 3 9 2.3327 - 2.2429 1.00 2673 141 0.1734 0.2216 REMARK 3 10 2.2429 - 2.1655 0.99 2665 136 0.1826 0.1951 REMARK 3 11 2.1655 - 2.0978 1.00 2690 118 0.1731 0.2159 REMARK 3 12 2.0978 - 2.0378 1.00 2637 155 0.1797 0.2508 REMARK 3 13 2.0378 - 1.9842 1.00 2660 126 0.1854 0.2372 REMARK 3 14 1.9842 - 1.9357 1.00 2674 130 0.2084 0.2411 REMARK 3 15 1.9357 - 1.8917 1.00 2648 144 0.2244 0.2827 REMARK 3 16 1.8917 - 1.8515 1.00 2671 117 0.2293 0.2790 REMARK 3 17 1.8515 - 1.8144 0.99 2629 143 0.2381 0.2571 REMARK 3 18 1.8144 - 1.7802 1.00 2634 141 0.2537 0.3163 REMARK 3 19 1.7802 - 1.7484 1.00 2633 151 0.2684 0.3093 REMARK 3 20 1.7484 - 1.7188 1.00 2651 123 0.2823 0.3153 REMARK 3 21 1.7188 - 1.6910 1.00 2618 147 0.3070 0.3294 REMARK 3 22 1.6910 - 1.6650 1.00 2635 162 0.3168 0.3528 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.200 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 20.450 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 21.35 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.007 4275 REMARK 3 ANGLE : 1.085 5831 REMARK 3 CHIRALITY : 0.046 643 REMARK 3 PLANARITY : 0.005 741 REMARK 3 DIHEDRAL : 13.058 1539 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 4 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 19 THROUGH 239 ) REMARK 3 ORIGIN FOR THE GROUP (A): 37.3485 -21.0301 15.5961 REMARK 3 T TENSOR REMARK 3 T11: 0.0905 T22: 0.1269 REMARK 3 T33: 0.0980 T12: -0.0164 REMARK 3 T13: -0.0023 T23: 0.0157 REMARK 3 L TENSOR REMARK 3 L11: 0.7668 L22: 0.8704 REMARK 3 L33: 0.9053 L12: 0.1044 REMARK 3 L13: 0.0963 L23: -0.1997 REMARK 3 S TENSOR REMARK 3 S11: 0.0387 S12: -0.1601 S13: -0.1224 REMARK 3 S21: 0.0769 S22: -0.0524 S23: -0.0518 REMARK 3 S31: 0.0791 S32: 0.0064 S33: 0.0111 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 240 THROUGH 317 ) REMARK 3 ORIGIN FOR THE GROUP (A): 30.5257 -16.2717 -0.1954 REMARK 3 T TENSOR REMARK 3 T11: 0.0758 T22: 0.0880 REMARK 3 T33: 0.0788 T12: -0.0151 REMARK 3 T13: 0.0002 T23: -0.0055 REMARK 3 L TENSOR REMARK 3 L11: 1.4063 L22: 1.3137 REMARK 3 L33: 1.6158 L12: -0.1242 REMARK 3 L13: 0.1206 L23: -0.1041 REMARK 3 S TENSOR REMARK 3 S11: -0.0198 S12: 0.0206 S13: 0.0072 REMARK 3 S21: -0.1073 S22: 0.0205 S23: -0.0003 REMARK 3 S31: -0.0081 S32: -0.0607 S33: 0.0025 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 318 THROUGH 448 ) REMARK 3 ORIGIN FOR THE GROUP (A): 17.6385 0.5349 -8.4665 REMARK 3 T TENSOR REMARK 3 T11: 0.1513 T22: 0.1747 REMARK 3 T33: 0.2297 T12: 0.0292 REMARK 3 T13: -0.0167 T23: 0.0171 REMARK 3 L TENSOR REMARK 3 L11: 0.5028 L22: 1.8012 REMARK 3 L33: 0.5761 L12: -0.2959 REMARK 3 L13: 0.1255 L23: -0.5818 REMARK 3 S TENSOR REMARK 3 S11: 0.0771 S12: -0.0128 S13: 0.0531 REMARK 3 S21: -0.2943 S22: 0.0429 S23: 0.5820 REMARK 3 S31: -0.0027 S32: -0.1201 S33: -0.0819 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 449 THROUGH 533 ) REMARK 3 ORIGIN FOR THE GROUP (A): 40.8104 11.7016 -1.2592 REMARK 3 T TENSOR REMARK 3 T11: 0.1160 T22: 0.0970 REMARK 3 T33: 0.1005 T12: -0.0047 REMARK 3 T13: 0.0341 T23: 0.0181 REMARK 3 L TENSOR REMARK 3 L11: 2.1167 L22: 1.9903 REMARK 3 L33: 2.0234 L12: -0.6327 REMARK 3 L13: 0.4236 L23: 0.7280 REMARK 3 S TENSOR REMARK 3 S11: 0.0510 S12: 0.0672 S13: 0.2147 REMARK 3 S21: -0.1099 S22: -0.0411 S23: -0.1689 REMARK 3 S31: -0.1316 S32: 0.0545 S33: 0.0100 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4YZT COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 26-MAR-15. REMARK 100 THE DEPOSITION ID IS D_1000208369. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 18-APR-13 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : ID23-1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.000 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M-F REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM 7.1.3, IMOSFLM REMARK 200 DATA SCALING SOFTWARE : AIMLESS 0.5.7 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 62144 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.660 REMARK 200 RESOLUTION RANGE LOW (A) : 73.660 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 200 DATA REDUNDANCY : 5.000 REMARK 200 R MERGE (I) : 0.14600 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 6.9000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.66 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.69 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.9 REMARK 200 DATA REDUNDANCY IN SHELL : 5.20 REMARK 200 R MERGE FOR SHELL (I) : 0.80200 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.200 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER 2.5.7 REMARK 200 STARTING MODEL: 4YZP REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 42.62 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.14 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 22.5 % PEG 4000, 14 % ISOPROPANOL AND REMARK 280 0.1 M SODIUM CITRATE, PH 6.0, VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 291K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 43 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y+1/2,X+1/2,Z+3/4 REMARK 290 4555 Y+1/2,-X+1/2,Z+1/4 REMARK 290 5555 -X+1/2,Y+1/2,-Z+3/4 REMARK 290 6555 X+1/2,-Y+1/2,-Z+1/4 REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 62.33500 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 45.64950 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 45.64950 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 93.50250 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 45.64950 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 45.64950 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 31.16750 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 45.64950 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 45.64950 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 93.50250 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 45.64950 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 45.64950 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 31.16750 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 62.33500 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A1036 LIES ON A SPECIAL POSITION. REMARK 375 HOH A1625 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A -2 REMARK 465 ALA A -1 REMARK 465 MET A 0 REMARK 465 VAL A 1 REMARK 465 PRO A 2 REMARK 465 LYS A 3 REMARK 465 ALA A 4 REMARK 465 SER A 5 REMARK 465 GLY A 6 REMARK 465 THR A 7 REMARK 465 SER A 8 REMARK 465 GLY A 9 REMARK 465 PRO A 10 REMARK 465 ALA A 11 REMARK 465 LYS A 12 REMARK 465 GLN A 13 REMARK 465 GLU A 14 REMARK 465 LYS A 15 REMARK 465 GLN A 16 REMARK 465 SER A 17 REMARK 465 ILE A 18 REMARK 465 ASN A 400 REMARK 465 GLY A 401 REMARK 465 ALA A 402 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ARG A 122 CD NE CZ NH1 NH2 REMARK 470 LYS A 139 NZ REMARK 470 LYS A 369 CG CD CE NZ REMARK 470 GLU A 371 CG CD OE1 OE2 REMARK 470 LYS A 374 CG CD CE NZ REMARK 470 ASN A 383 CG OD1 ND2 REMARK 470 LYS A 397 CG CD CE NZ REMARK 470 LYS A 432 CG CD CE NZ REMARK 470 GLU A 434 CG CD OE1 OE2 REMARK 470 ARG A 472 NE CZ NH1 NH2 REMARK 470 GLU A 477 CD OE1 OE2 REMARK 470 LYS A 506 CE NZ REMARK 470 LYS A 509 CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 1106 O HOH A 1482 1.90 REMARK 500 O HOH A 1465 O HOH A 1501 1.92 REMARK 500 OE1 GLU A 129 O HOH A 901 1.92 REMARK 500 O HOH A 916 O HOH A 1301 1.95 REMARK 500 O HOH A 1462 O HOH A 1482 1.97 REMARK 500 O HOH A 1350 O HOH A 1445 2.00 REMARK 500 NZ LYS A 459 O HOH A 902 2.00 REMARK 500 OE2 GLU A 105 O HOH A 903 2.02 REMARK 500 O HOH A 941 O HOH A 1532 2.02 REMARK 500 O HOH A 901 O HOH A 942 2.03 REMARK 500 O HOH A 907 O HOH A 1331 2.05 REMARK 500 O HOH A 1424 O HOH A 1566 2.06 REMARK 500 O HOH A 1119 O HOH A 1474 2.07 REMARK 500 O HOH A 1283 O HOH A 1547 2.09 REMARK 500 O HOH A 1269 O HOH A 1528 2.10 REMARK 500 O HOH A 1299 O HOH A 1574 2.10 REMARK 500 O HOH A 1259 O HOH A 1460 2.12 REMARK 500 OE2 GLU A 159 O1 BGC B 1 2.13 REMARK 500 O HOH A 1217 O HOH A 1519 2.13 REMARK 500 O HOH A 1577 O HOH A 1592 2.16 REMARK 500 O HOH A 1469 O HOH A 1525 2.18 REMARK 500 O HOH A 1182 O HOH A 1337 2.19 REMARK 500 O HOH A 1619 O HOH A 1626 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 1045 O HOH A 1405 7545 2.05 REMARK 500 O HOH A 1028 O HOH A 1353 3544 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 THR A 37 -93.82 -129.51 REMARK 500 TRP A 47 -140.33 -101.92 REMARK 500 ASP A 75 -68.95 -26.76 REMARK 500 HIS A 113 -97.63 -107.25 REMARK 500 TRP A 119 -23.50 -149.74 REMARK 500 GLU A 159 59.45 32.93 REMARK 500 GLN A 307 -90.34 -128.06 REMARK 500 LYS A 369 -108.57 62.15 REMARK 500 LEU A 475 32.31 -96.84 REMARK 500 ASP A 488 -56.05 77.94 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A1633 DISTANCE = 5.98 ANGSTROMS REMARK 525 HOH A1634 DISTANCE = 6.09 ANGSTROMS REMARK 525 HOH A1635 DISTANCE = 6.84 ANGSTROMS REMARK 525 HOH A1636 DISTANCE = 7.04 ANGSTROMS REMARK 525 HOH A1637 DISTANCE = 7.41 ANGSTROMS REMARK 525 HOH A1638 DISTANCE = 8.38 ANGSTROMS REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4YZP RELATED DB: PDB DBREF 4YZT A 1 533 UNP D1L8C7 D1L8C7_BACLI 9 541 SEQADV 4YZT GLY A -2 UNP D1L8C7 EXPRESSION TAG SEQADV 4YZT ALA A -1 UNP D1L8C7 EXPRESSION TAG SEQADV 4YZT MET A 0 UNP D1L8C7 EXPRESSION TAG SEQRES 1 A 536 GLY ALA MET VAL PRO LYS ALA SER GLY THR SER GLY PRO SEQRES 2 A 536 ALA LYS GLN GLU LYS GLN SER ILE ILE THR PRO ALA ASP SEQRES 3 A 536 LEU LEU GLU ASN MET SER PRO GLY TRP ASN LEU GLY ASN SEQRES 4 A 536 THR LEU ASP ALA VAL PRO THR GLU GLY SER TRP ASN ASN SEQRES 5 A 536 PRO PRO VAL ARG GLU HIS THR PHE ASP ASP ILE ARG ASP SEQRES 6 A 536 ALA GLY PHE LYS SER VAL ARG ILE PRO VAL THR TRP ASP SEQRES 7 A 536 SER HIS ILE GLY SER ALA PRO GLU TYR PRO ILE ASP THR SEQRES 8 A 536 ASP TRP MET ASN ARG VAL GLU GLU VAL THR ASP TRP ALA SEQRES 9 A 536 LEU GLU ARG GLU PHE TYR VAL VAL LEU ASN ILE HIS HIS SEQRES 10 A 536 ASP SER TRP LEU TRP ILE SER ARG MET GLY ASN SER GLN SEQRES 11 A 536 GLN GLU THR LEU ASP LYS LEU GLY LYS VAL TRP LYS GLN SEQRES 12 A 536 ILE ALA GLU ARG PHE LYS ASN LYS SER GLU ARG LEU LEU SEQRES 13 A 536 PHE GLU ILE VAL ASN GLU PRO THR GLY MET SER ALA TYR SEQRES 14 A 536 GLN MET ASN LEU LEU ASN ARG GLU MET LEU ASN ILE ILE SEQRES 15 A 536 ARG SER THR GLY GLY LYS ASN GLY GLN ARG LEU VAL ILE SEQRES 16 A 536 VAL GLY GLY LEU GLU ASP ASN LYS ASP GLU LEU LEU HIS SEQRES 17 A 536 SER PHE GLU PRO PRO ASP ASP ASP ARG ILE VAL LEU THR SEQRES 18 A 536 TYR HIS TYR TYR SER PRO TRP ASP TYR VAL SER ASN TRP SEQRES 19 A 536 TRP GLY ARG THR THR TRP GLY SER ALA ALA GLU ILE SER SEQRES 20 A 536 GLU MET GLU GLU ASP ILE LYS PRO VAL TYR GLU LYS PHE SEQRES 21 A 536 VAL ARG GLU GLY TYR PRO VAL ILE ILE GLY GLU TYR GLY SEQRES 22 A 536 THR LEU GLY ALA ASN GLU LYS HIS SER LYS TRP LEU TYR SEQRES 23 A 536 HIS ASP THR PHE VAL ARG LEU ALA HIS LYS TYR GLN MET SEQRES 24 A 536 VAL PRO MET TRP TRP ASP ASN GLY ASN ASP GLN PHE ASP SEQRES 25 A 536 ARG ALA GLU ARG GLN TRP ARG ASP PRO VAL VAL LYS GLU SEQRES 26 A 536 ILE VAL ILE GLN ALA GLY ARG GLY VAL PRO ASN ALA ILE SEQRES 27 A 536 ILE LYS PRO ALA ASP LEU PHE ILE LYS LYS GLY GLN SER SEQRES 28 A 536 ILE SER ASP GLN THR VAL ASP ILE GLN LEU ASN GLY ASN SEQRES 29 A 536 VAL LEU THR GLY ILE TYR GLN LYS SER GLU PRO LEU LYS SEQRES 30 A 536 GLU GLY SER ASP TYR THR VAL ASP ASN ALA GLY LYS THR SEQRES 31 A 536 VAL SER ILE LYS ALA SER CYS LEU ALA LYS LEU LEU ASN SEQRES 32 A 536 GLY ALA GLY GLN PRO GLY VAL LYS ALA GLN LEU THR PHE SEQRES 33 A 536 THR PHE HIS LYS GLY ALA SER GLN VAL MET ASP ILE ILE SEQRES 34 A 536 LEU TYR ASP ASP PRO LYS LEU GLU LYS SER GLU PHE THR SEQRES 35 A 536 ILE SER GLN SER ALA ILE SER GLY ASP LEU LYS ILE PRO SEQRES 36 A 536 ALA SER LEU ASN GLY THR LYS LEU ALA THR VAL LYS GLY SEQRES 37 A 536 VAL VAL ASP SER THR GLY ARG PRO VAL LEU GLU GLU VAL SEQRES 38 A 536 TRP SER TRP THR PRO TYR LEU ASN TYR ASP GLU ASP PHE SEQRES 39 A 536 TYR GLU LYS ASP GLY ASP LEU TYR LEU LYS GLU ARG VAL SEQRES 40 A 536 LEU LYS TYR LEU LYS SER ASP SER THR PHE THR PHE GLU SEQRES 41 A 536 LEU TRP PRO LYS GLY VAL GLU ALA VAL VAL LYS VAL LYS SEQRES 42 A 536 ILE THR PRO HET BGC B 1 12 HET BGC B 2 11 HET BGC B 3 11 HET BGC B 4 11 HET EDO A 801 4 HET EDO A 802 4 HETNAM BGC BETA-D-GLUCOPYRANOSE HETNAM EDO 1,2-ETHANEDIOL HETSYN BGC BETA-D-GLUCOSE; D-GLUCOSE; GLUCOSE HETSYN EDO ETHYLENE GLYCOL FORMUL 2 BGC 4(C6 H12 O6) FORMUL 3 EDO 2(C2 H6 O2) FORMUL 5 HOH *738(H2 O) HELIX 1 AA1 THR A 20 SER A 29 1 10 HELIX 2 AA2 ARG A 53 GLY A 64 1 12 HELIX 3 AA3 TRP A 74 ILE A 78 5 5 HELIX 4 AA4 ASP A 87 GLU A 103 1 17 HELIX 5 AA5 HIS A 114 TRP A 119 1 6 HELIX 6 AA6 ILE A 120 GLY A 124 5 5 HELIX 7 AA7 SER A 126 PHE A 145 1 20 HELIX 8 AA8 SER A 164 THR A 182 1 19 HELIX 9 AA9 GLY A 183 GLN A 188 5 6 HELIX 10 AB1 GLY A 195 ASP A 198 5 4 HELIX 11 AB2 ASN A 199 SER A 206 1 8 HELIX 12 AB3 PRO A 224 SER A 229 1 6 HELIX 13 AB4 SER A 239 PHE A 257 1 19 HELIX 14 AB5 VAL A 258 GLY A 261 5 4 HELIX 15 AB6 GLU A 276 TYR A 294 1 19 HELIX 16 AB7 ASP A 317 GLY A 328 1 12 HELIX 17 AB8 LYS A 391 LEU A 399 1 9 HELIX 18 AB9 SER A 443 ILE A 445 5 3 HELIX 19 AC1 LYS A 501 LEU A 508 1 8 SHEET 1 AA1 9 GLY A 31 ASN A 33 0 SHEET 2 AA1 9 SER A 67 ILE A 70 1 O ARG A 69 N TRP A 32 SHEET 3 AA1 9 TYR A 107 ASN A 111 1 O VAL A 109 N ILE A 70 SHEET 4 AA1 9 LEU A 152 GLU A 155 1 O LEU A 153 N VAL A 108 SHEET 5 AA1 9 VAL A 191 VAL A 193 1 O ILE A 192 N PHE A 154 SHEET 6 AA1 9 ILE A 215 TYR A 221 1 O VAL A 216 N VAL A 193 SHEET 7 AA1 9 VAL A 264 TYR A 269 1 O ILE A 265 N LEU A 217 SHEET 8 AA1 9 MET A 296 TRP A 300 1 O VAL A 297 N ILE A 266 SHEET 9 AA1 9 GLY A 31 ASN A 33 1 N GLY A 31 O PRO A 298 SHEET 1 AA2 2 PHE A 308 ASP A 309 0 SHEET 2 AA2 2 GLN A 314 TRP A 315 -1 O GLN A 314 N ASP A 309 SHEET 1 AA3 4 ILE A 335 LYS A 337 0 SHEET 2 AA3 4 GLN A 352 GLN A 357 -1 O GLN A 357 N ILE A 335 SHEET 3 AA3 4 THR A 387 ILE A 390 -1 O ILE A 390 N GLN A 352 SHEET 4 AA3 4 TYR A 379 VAL A 381 -1 N THR A 380 O SER A 389 SHEET 1 AA4 5 ASP A 340 LYS A 344 0 SHEET 2 AA4 5 GLN A 421 TYR A 428 1 O ILE A 426 N LEU A 341 SHEET 3 AA4 5 GLY A 406 PHE A 415 -1 N PHE A 413 O GLN A 421 SHEET 4 AA4 5 LEU A 363 GLN A 368 -1 N TYR A 367 O THR A 412 SHEET 5 AA4 5 GLU A 371 PRO A 372 -1 O GLU A 371 N GLN A 368 SHEET 1 AA5 2 LYS A 432 LEU A 433 0 SHEET 2 AA5 2 ALA A 453 SER A 454 -1 O SER A 454 N LYS A 432 SHEET 1 AA6 4 GLU A 437 SER A 441 0 SHEET 2 AA6 4 GLU A 524 THR A 532 1 O LYS A 530 N PHE A 438 SHEET 3 AA6 4 SER A 512 TRP A 519 -1 N PHE A 514 O VAL A 527 SHEET 4 AA6 4 LYS A 459 VAL A 467 -1 N LYS A 459 O TRP A 519 SHEET 1 AA7 3 LEU A 449 ILE A 451 0 SHEET 2 AA7 3 ASP A 497 LEU A 500 -1 O LEU A 498 N ILE A 451 SHEET 3 AA7 3 PHE A 491 LYS A 494 -1 N LYS A 494 O ASP A 497 LINK O4 BGC B 1 C1 BGC B 2 1555 1555 1.41 LINK O4 BGC B 2 C1 BGC B 3 1555 1555 1.40 LINK O4 BGC B 3 C1 BGC B 4 1555 1555 1.41 CISPEP 1 SER A 29 PRO A 30 0 -3.01 CISPEP 2 VAL A 41 PRO A 42 0 7.93 CISPEP 3 ALA A 81 PRO A 82 0 3.45 CISPEP 4 SER A 223 PRO A 224 0 -2.97 CISPEP 5 SER A 223 PRO A 224 0 -4.75 CISPEP 6 LYS A 337 PRO A 338 0 6.23 CISPEP 7 TRP A 519 PRO A 520 0 3.73 CRYST1 91.299 91.299 124.670 90.00 90.00 90.00 P 43 21 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.010953 0.000000 0.000000 0.00000 SCALE2 0.000000 0.010953 0.000000 0.00000 SCALE3 0.000000 0.000000 0.008021 0.00000