HEADER SIGNALING PROTEIN 25-MAR-15 4YZY TITLE CRYSTAL STRUCTURES REVEAL TRANSIENT PERK LUMINAL DOMAIN TITLE 2 TETRAMERIZATION IN ER STRESS SIGNALING COMPND MOL_ID: 1; COMPND 2 MOLECULE: EUKARYOTIC TRANSLATION INITIATION FACTOR 2-ALPHA KINASE 3; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: UNP RESIDUES 100-399; COMPND 5 SYNONYM: PRKR-LIKE ENDOPLASMIC RETICULUM KINASE,PANCREATIC EIF2-ALPHA COMPND 6 KINASE; COMPND 7 EC: 2.7.11.1; COMPND 8 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MUS MUSCULUS; SOURCE 3 ORGANISM_COMMON: MOUSE; SOURCE 4 ORGANISM_TAXID: 10090; SOURCE 5 GENE: EIF2AK3, PEK, PERK; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS UPR, ER STRESS SENSING, PROTEOSTASIS, PERK, DIMER, SIGNALING PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR M.CARRARA,F.PRISCHI,M.M.U.ALI REVDAT 4 10-JAN-24 4YZY 1 REMARK REVDAT 3 13-SEP-17 4YZY 1 REMARK REVDAT 2 17-JUN-15 4YZY 1 JRNL REVDAT 1 13-MAY-15 4YZY 0 JRNL AUTH M.CARRARA,F.PRISCHI,P.R.NOWAK,M.M.ALI JRNL TITL CRYSTAL STRUCTURES REVEAL TRANSIENT PERK LUMINAL DOMAIN JRNL TITL 2 TETRAMERIZATION IN ENDOPLASMIC RETICULUM STRESS SIGNALING. JRNL REF EMBO J. V. 34 1589 2015 JRNL REFN ESSN 1460-2075 JRNL PMID 25925385 JRNL DOI 10.15252/EMBJ.201489183 REMARK 2 REMARK 2 RESOLUTION. 3.20 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX DEV_1448 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 3.20 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 54.35 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.920 REMARK 3 COMPLETENESS FOR RANGE (%) : 93.7 REMARK 3 NUMBER OF REFLECTIONS : 10723 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.291 REMARK 3 R VALUE (WORKING SET) : 0.290 REMARK 3 FREE R VALUE : 0.305 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.790 REMARK 3 FREE R VALUE TEST SET COUNT : 514 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 54.3550 - 5.0793 0.98 2682 136 0.2707 0.2751 REMARK 3 2 5.0793 - 4.0320 0.96 2635 122 0.2664 0.2812 REMARK 3 3 4.0320 - 3.5224 0.92 2520 123 0.3483 0.3670 REMARK 3 4 3.5224 - 3.2004 0.88 2372 133 0.4024 0.4625 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.640 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 36.190 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.004 1254 REMARK 3 ANGLE : 1.065 1707 REMARK 3 CHIRALITY : 0.032 204 REMARK 3 PLANARITY : 0.003 211 REMARK 3 DIHEDRAL : 15.695 413 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 4 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 103 THROUGH 138 ) REMARK 3 ORIGIN FOR THE GROUP (A): -4.4790 41.6586 -6.2000 REMARK 3 T TENSOR REMARK 3 T11: 1.0433 T22: 1.3621 REMARK 3 T33: 1.0127 T12: 0.2770 REMARK 3 T13: -0.1166 T23: 0.2167 REMARK 3 L TENSOR REMARK 3 L11: 3.9453 L22: 6.0756 REMARK 3 L33: 4.5213 L12: -0.2422 REMARK 3 L13: 2.3845 L23: 0.6361 REMARK 3 S TENSOR REMARK 3 S11: 1.1512 S12: -0.6625 S13: -1.2111 REMARK 3 S21: -1.2329 S22: -0.5037 S23: 0.2424 REMARK 3 S31: -0.7345 S32: 0.5707 S33: 0.0999 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 139 THROUGH 268 ) REMARK 3 ORIGIN FOR THE GROUP (A): 9.5313 33.3140 -1.9795 REMARK 3 T TENSOR REMARK 3 T11: 0.8681 T22: 0.9807 REMARK 3 T33: 1.1390 T12: -0.0111 REMARK 3 T13: -0.0868 T23: 0.0448 REMARK 3 L TENSOR REMARK 3 L11: 8.2099 L22: 3.4417 REMARK 3 L33: 3.6799 L12: -1.7787 REMARK 3 L13: 0.3750 L23: 1.1686 REMARK 3 S TENSOR REMARK 3 S11: -0.5198 S12: -0.1177 S13: -0.4027 REMARK 3 S21: 0.3357 S22: 0.5564 S23: 0.1792 REMARK 3 S31: -0.1037 S32: -0.1276 S33: -0.1690 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 269 THROUGH 345 ) REMARK 3 ORIGIN FOR THE GROUP (A): -13.4655 37.6901 -10.3577 REMARK 3 T TENSOR REMARK 3 T11: 1.0296 T22: 1.3113 REMARK 3 T33: 1.6781 T12: -0.0093 REMARK 3 T13: -0.1538 T23: 0.1093 REMARK 3 L TENSOR REMARK 3 L11: 6.3830 L22: 4.3256 REMARK 3 L33: 2.9202 L12: -3.5752 REMARK 3 L13: 2.1118 L23: 0.1268 REMARK 3 S TENSOR REMARK 3 S11: 0.7729 S12: -0.6082 S13: -0.3700 REMARK 3 S21: -0.2821 S22: -0.6415 S23: 1.3171 REMARK 3 S31: -1.1764 S32: -0.3177 S33: 0.1686 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 346 THROUGH 355 ) REMARK 3 ORIGIN FOR THE GROUP (A): -12.4954 32.6362 -0.3367 REMARK 3 T TENSOR REMARK 3 T11: 2.3715 T22: 1.9103 REMARK 3 T33: 1.8896 T12: -0.9530 REMARK 3 T13: 0.5796 T23: -0.0066 REMARK 3 L TENSOR REMARK 3 L11: 1.9526 L22: 4.6106 REMARK 3 L33: 6.0902 L12: -2.1702 REMARK 3 L13: 2.6453 L23: -5.2846 REMARK 3 S TENSOR REMARK 3 S11: 0.0056 S12: -1.8476 S13: -1.2656 REMARK 3 S21: 2.6395 S22: -1.7506 S23: -0.1491 REMARK 3 S31: -0.0536 S32: -0.9258 S33: 0.2393 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4YZY COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 26-MAR-15. REMARK 100 THE DEPOSITION ID IS D_1000208368. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 01-OCT-12 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : NULL REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : DIAMOND REMARK 200 BEAMLINE : I02 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9795 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 11682 REMARK 200 RESOLUTION RANGE HIGH (A) : 3.200 REMARK 200 RESOLUTION RANGE LOW (A) : 54.347 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 200 DATA REDUNDANCY : 5.200 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.08000 REMARK 200 FOR THE DATA SET : 12.2000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 3.20 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 3.30 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.7 REMARK 200 DATA REDUNDANCY IN SHELL : 6.40 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : 0.81900 REMARK 200 FOR SHELL : 2.600 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 4YZS REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 53.92 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.67 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M MES/IMIDAZOLE (PH 6.5), 0.09 REMARK 280 SODIUM PHOSPHATE SALTS (NPS) MIX (CONTAINING 0.03 M OF EACH REMARK 280 NAN03, NA2HPO4, (NH4)2SO4), 12.5% W/V PEG1000, 12.5% W/V PEG3350, REMARK 280 20% V/V MPD., VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 291K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 31 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+1/3 REMARK 290 3555 -X+Y,-X,Z+2/3 REMARK 290 4555 Y,X,-Z REMARK 290 5555 X-Y,-Y,-Z+2/3 REMARK 290 6555 -X,-X+Y,-Z+1/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 25.07333 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 50.14667 REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 50.14667 REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 25.07333 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2020 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 17390 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -10.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -0.500000 0.866025 0.000000 0.00000 REMARK 350 BIOMT2 2 0.866025 0.500000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ASP A 119 REMARK 465 ALA A 120 REMARK 465 GLU A 121 REMARK 465 LYS A 144 REMARK 465 PRO A 145 REMARK 465 GLU A 146 REMARK 465 VAL A 147 REMARK 465 PHE A 148 REMARK 465 GLY A 149 REMARK 465 ASN A 150 REMARK 465 LYS A 151 REMARK 465 MET A 152 REMARK 465 ILE A 153 REMARK 465 ILE A 154 REMARK 465 PRO A 155 REMARK 465 SER A 156 REMARK 465 LEU A 157 REMARK 465 ASP A 158 REMARK 465 GLY A 159 REMARK 465 ASP A 160 REMARK 465 LEU A 161 REMARK 465 PHE A 162 REMARK 465 GLN A 163 REMARK 465 TRP A 164 REMARK 465 ASP A 165 REMARK 465 ARG A 166 REMARK 465 ASP A 167 REMARK 465 ARG A 168 REMARK 465 GLU A 169 REMARK 465 SER A 170 REMARK 465 MET A 171 REMARK 465 GLU A 172 REMARK 465 ALA A 173 REMARK 465 VAL A 174 REMARK 465 PRO A 175 REMARK 465 PHE A 176 REMARK 465 THR A 177 REMARK 465 VAL A 178 REMARK 465 GLU A 179 REMARK 465 SER A 180 REMARK 465 LEU A 181 REMARK 465 LEU A 182 REMARK 465 GLU A 183 REMARK 465 SER A 184 REMARK 465 SER A 185 REMARK 465 TYR A 186 REMARK 465 LYS A 187 REMARK 465 PHE A 188 REMARK 465 GLY A 189 REMARK 465 ASP A 190 REMARK 465 TYR A 208 REMARK 465 SER A 209 REMARK 465 GLY A 210 REMARK 465 MET A 229 REMARK 465 GLU A 230 REMARK 465 GLU A 231 REMARK 465 MET A 272 REMARK 465 GLU A 273 REMARK 465 THR A 274 REMARK 465 ARG A 275 REMARK 465 ALA A 276 REMARK 465 GLY A 277 REMARK 465 PHE A 278 REMARK 465 ILE A 279 REMARK 465 GLU A 280 REMARK 465 SER A 281 REMARK 465 THR A 282 REMARK 465 PHE A 283 REMARK 465 LYS A 284 REMARK 465 PRO A 285 REMARK 465 GLY A 286 REMARK 465 GLY A 287 REMARK 465 ASN A 288 REMARK 465 LYS A 289 REMARK 465 GLU A 290 REMARK 465 ASP A 291 REMARK 465 SER A 292 REMARK 465 LYS A 293 REMARK 465 ILE A 294 REMARK 465 ILE A 295 REMARK 465 SER A 296 REMARK 465 ASP A 297 REMARK 465 VAL A 298 REMARK 465 GLU A 299 REMARK 465 GLU A 300 REMARK 465 GLN A 301 REMARK 465 GLU A 302 REMARK 465 ALA A 303 REMARK 465 THR A 304 REMARK 465 MET A 305 REMARK 465 PHE A 356 REMARK 465 ASP A 357 REMARK 465 ASP A 358 REMARK 465 THR A 359 REMARK 465 SER A 360 REMARK 465 TYR A 361 REMARK 465 THR A 362 REMARK 465 ALA A 363 REMARK 465 SER A 364 REMARK 465 GLU A 365 REMARK 465 GLU A 366 REMARK 465 ALA A 367 REMARK 465 LEU A 368 REMARK 465 GLY A 369 REMARK 465 ASP A 370 REMARK 465 GLU A 371 REMARK 465 GLU A 372 REMARK 465 ASP A 373 REMARK 465 ILE A 374 REMARK 465 VAL A 375 REMARK 465 GLU A 376 REMARK 465 ALA A 377 REMARK 465 ALA A 378 REMARK 465 ARG A 379 REMARK 465 GLY A 380 REMARK 465 ALA A 381 REMARK 465 THR A 382 REMARK 465 GLU A 383 REMARK 465 ASN A 384 REMARK 465 SER A 385 REMARK 465 VAL A 386 REMARK 465 TYR A 387 REMARK 465 LEU A 388 REMARK 465 GLY A 389 REMARK 465 MET A 390 REMARK 465 TYR A 391 REMARK 465 ARG A 392 REMARK 465 GLY A 393 REMARK 465 GLN A 394 REMARK 465 LEU A 395 REMARK 465 TYR A 396 REMARK 465 LEU A 397 REMARK 465 GLN A 398 REMARK 465 SER A 399 REMARK 465 SER A 400 REMARK 465 VAL A 401 REMARK 465 ARG A 402 REMARK 465 VAL A 403 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 125 CG CD CE NZ REMARK 470 LYS A 126 CG CD CE NZ REMARK 470 ASP A 129 CG OD1 OD2 REMARK 470 LYS A 198 CG CD CE NZ REMARK 470 LYS A 211 CG CD CE NZ REMARK 470 ARG A 222 CG CD NE CZ NH1 NH2 REMARK 470 GLU A 228 CG CD OE1 OE2 REMARK 470 GLU A 232 CG CD OE1 OE2 REMARK 470 GLU A 233 CG CD OE1 OE2 REMARK 470 ASP A 234 CG OD1 OD2 REMARK 470 ILE A 235 CG1 CG2 CD1 REMARK 470 ARG A 246 CZ NH1 NH2 REMARK 470 LYS A 256 CG CD CE NZ REMARK 470 ASP A 271 CG OD1 OD2 REMARK 470 LEU A 306 CG CD1 CD2 REMARK 470 ARG A 324 CG CD NE CZ NH1 NH2 REMARK 470 LYS A 325 CG CD CE NZ REMARK 470 ARG A 328 CG CD NE CZ NH1 NH2 REMARK 470 GLU A 330 CG CD OE1 OE2 REMARK 470 ARG A 346 CG CD NE CZ NH1 NH2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OG SER A 143 O GLU A 255 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER A 104 111.85 -160.76 REMARK 500 ASP A 123 -82.39 -156.97 REMARK 500 SER A 134 -1.08 -141.82 REMARK 500 SER A 206 -161.74 -102.56 REMARK 500 ASP A 225 -155.24 -83.24 REMARK 500 SER A 226 163.34 65.70 REMARK 500 GLU A 233 -154.62 56.05 REMARK 500 SER A 252 144.02 -171.61 REMARK 500 GLU A 255 99.17 57.85 REMARK 500 ASP A 307 -83.84 -152.54 REMARK 500 THR A 308 171.81 59.59 REMARK 500 PHE A 322 -151.39 -107.17 REMARK 500 SER A 323 -128.82 -149.52 REMARK 500 LYS A 325 -58.08 -164.66 REMARK 500 ARG A 346 -105.34 -98.01 REMARK 500 ASP A 347 -78.51 -36.73 REMARK 500 REMARK 500 REMARK: NULL DBREF 4YZY A 104 403 UNP Q9Z2B5 E2AK3_MOUSE 100 399 SEQADV 4YZY ALA A 103 UNP Q9Z2B5 EXPRESSION TAG SEQADV 4YZY THR A 201 UNP Q9Z2B5 ILE 197 CONFLICT SEQRES 1 A 301 ALA SER LEU VAL ILE ILE SER THR LEU ASP GLY ARG ILE SEQRES 2 A 301 ALA ALA LEU ASP ALA GLU ASN ASP GLY LYS LYS GLN TRP SEQRES 3 A 301 ASP LEU ASP VAL GLY SER GLY SER LEU VAL SER SER SER SEQRES 4 A 301 LEU SER LYS PRO GLU VAL PHE GLY ASN LYS MET ILE ILE SEQRES 5 A 301 PRO SER LEU ASP GLY ASP LEU PHE GLN TRP ASP ARG ASP SEQRES 6 A 301 ARG GLU SER MET GLU ALA VAL PRO PHE THR VAL GLU SER SEQRES 7 A 301 LEU LEU GLU SER SER TYR LYS PHE GLY ASP ASP VAL VAL SEQRES 8 A 301 LEU VAL GLY GLY LYS SER LEU THR THR TYR GLY LEU SER SEQRES 9 A 301 ALA TYR SER GLY LYS LEU ARG TYR ILE CYS SER ALA LEU SEQRES 10 A 301 GLY CYS ARG ARG TRP ASP SER ASP GLU MET GLU GLU GLU SEQRES 11 A 301 GLU ASP ILE LEU LEU LEU GLN ARG THR GLN LYS THR VAL SEQRES 12 A 301 ARG ALA VAL GLY PRO ARG SER GLY SER GLU LYS TRP ASN SEQRES 13 A 301 PHE SER VAL GLY HIS PHE GLU LEU ARG TYR ILE PRO ASP SEQRES 14 A 301 MET GLU THR ARG ALA GLY PHE ILE GLU SER THR PHE LYS SEQRES 15 A 301 PRO GLY GLY ASN LYS GLU ASP SER LYS ILE ILE SER ASP SEQRES 16 A 301 VAL GLU GLU GLN GLU ALA THR MET LEU ASP THR VAL ILE SEQRES 17 A 301 LYS VAL SER VAL ALA ASP TRP LYS VAL MET ALA PHE SER SEQRES 18 A 301 ARG LYS GLY GLY ARG LEU GLU TRP GLU TYR GLN PHE CYS SEQRES 19 A 301 THR PRO ILE ALA SER ALA TRP LEU VAL ARG ASP GLY LYS SEQRES 20 A 301 VAL ILE PRO ILE SER LEU PHE ASP ASP THR SER TYR THR SEQRES 21 A 301 ALA SER GLU GLU ALA LEU GLY ASP GLU GLU ASP ILE VAL SEQRES 22 A 301 GLU ALA ALA ARG GLY ALA THR GLU ASN SER VAL TYR LEU SEQRES 23 A 301 GLY MET TYR ARG GLY GLN LEU TYR LEU GLN SER SER VAL SEQRES 24 A 301 ARG VAL SHEET 1 AA1 4 TRP A 128 ASP A 131 0 SHEET 2 AA1 4 ARG A 114 LEU A 118 -1 N ALA A 117 O TRP A 128 SHEET 3 AA1 4 LEU A 105 THR A 110 -1 N THR A 110 O ARG A 114 SHEET 4 AA1 4 ILE A 339 VAL A 345 -1 O SER A 341 N SER A 109 SHEET 1 AA2 4 VAL A 138 SER A 140 0 SHEET 2 AA2 4 TRP A 257 TYR A 268 -1 O SER A 260 N SER A 139 SHEET 3 AA2 4 LEU A 236 VAL A 248 -1 N THR A 241 O HIS A 263 SHEET 4 AA2 4 VAL A 193 GLY A 196 -1 N VAL A 193 O VAL A 248 SHEET 1 AA3 6 VAL A 138 SER A 140 0 SHEET 2 AA3 6 TRP A 257 TYR A 268 -1 O SER A 260 N SER A 139 SHEET 3 AA3 6 LEU A 236 VAL A 248 -1 N THR A 241 O HIS A 263 SHEET 4 AA3 6 SER A 199 LEU A 205 -1 N TYR A 203 O LEU A 238 SHEET 5 AA3 6 TYR A 214 CYS A 216 -1 O TYR A 214 N GLY A 204 SHEET 6 AA3 6 CYS A 221 ARG A 223 -1 O ARG A 222 N ILE A 215 SHEET 1 AA4 3 ILE A 310 SER A 313 0 SHEET 2 AA4 3 LYS A 318 ALA A 321 -1 O MET A 320 N LYS A 311 SHEET 3 AA4 3 TRP A 331 GLN A 334 -1 O TRP A 331 N ALA A 321 SSBOND 1 CYS A 216 CYS A 221 1555 1555 2.03 CISPEP 1 LYS A 325 GLY A 326 0 -8.80 CRYST1 90.770 90.770 75.220 90.00 90.00 120.00 P 31 2 1 6 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.011017 0.006361 0.000000 0.00000 SCALE2 0.000000 0.012721 0.000000 0.00000 SCALE3 0.000000 0.000000 0.013294 0.00000