HEADER HYDROLASE 26-MAR-15 4Z0V TITLE THE STRUCTURE OF HUMAN PDE12 RESIDUES 161-609 COMPND MOL_ID: 1; COMPND 2 MOLECULE: 2',5'-PHOSPHODIESTERASE 12; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: UNP RESIDUES 155-609; COMPND 5 SYNONYM: 2-PDE,MITOCHONDRIAL DEADENYLASE; COMPND 6 EC: 3.1.4.-,3.1.13.4; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: PDE12; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21; SOURCE 9 EXPRESSION_SYSTEM_VARIANT: DE3 KEYWDS PDE12 2'-5'A EEP NUCLEASE, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR R.T.NOLTE,B.WISELY,L.WANG,E.R.WOOD REVDAT 4 27-SEP-23 4Z0V 1 JRNL REMARK LINK REVDAT 3 19-AUG-15 4Z0V 1 JRNL REVDAT 2 24-JUN-15 4Z0V 1 JRNL REVDAT 1 17-JUN-15 4Z0V 0 JRNL AUTH E.R.WOOD,R.BLEDSOE,J.CHAI,P.DAKA,H.DENG,Y.DING, JRNL AUTH 2 S.HARRIS-GURLEY,L.H.KRYN,E.NARTEY,J.NICHOLS,R.T.NOLTE, JRNL AUTH 3 N.PRABHU,C.RISE,T.SHEAHAN,J.B.SHOTWELL,D.SMITH,V.TAI, JRNL AUTH 4 J.D.TAYLOR,G.TOMBERLIN,L.WANG,B.WISELY,S.YOU,B.XIA,H.DICKSON JRNL TITL THE ROLE OF PHOSPHODIESTERASE 12 (PDE12) AS A NEGATIVE JRNL TITL 2 REGULATOR OF THE INNATE IMMUNE RESPONSE AND THE DISCOVERY OF JRNL TITL 3 ANTIVIRAL INHIBITORS. JRNL REF J.BIOL.CHEM. V. 290 19681 2015 JRNL REFN ESSN 1083-351X JRNL PMID 26055709 JRNL DOI 10.1074/JBC.M115.653113 REMARK 2 REMARK 2 RESOLUTION. 1.78 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : BUSTER 2.11.6 REMARK 3 AUTHORS : BRICOGNE,BLANC,BRANDL,FLENSBURG,KELLER, REMARK 3 : PACIOREK,ROVERSI,SHARFF,SMART,VONRHEIN, REMARK 3 : WOMACK,MATTHEWS,TEN EYCK,TRONRUD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.78 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 43.78 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 3 NUMBER OF REFLECTIONS : 41211 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.166 REMARK 3 R VALUE (WORKING SET) : 0.165 REMARK 3 FREE R VALUE : 0.201 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 3.130 REMARK 3 FREE R VALUE TEST SET COUNT : 1291 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (ANGSTROMS) : 1.78 REMARK 3 BIN RESOLUTION RANGE LOW (ANGSTROMS) : 1.83 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.96 REMARK 3 REFLECTIONS IN BIN (WORKING + TEST SET) : 3052 REMARK 3 BIN R VALUE (WORKING + TEST SET) : 0.2022 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 2959 REMARK 3 BIN R VALUE (WORKING SET) : 0.2020 REMARK 3 BIN FREE R VALUE : 0.2086 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 3.05 REMARK 3 BIN FREE R VALUE TEST SET COUNT : 93 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3414 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 37 REMARK 3 SOLVENT ATOMS : 360 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 19.41 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 21.18 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 3.95370 REMARK 3 B22 (A**2) : -2.05260 REMARK 3 B33 (A**2) : -1.90110 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : -0.79340 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.172 REMARK 3 DPI (BLOW EQ-10) BASED ON R VALUE (A) : 0.116 REMARK 3 DPI (BLOW EQ-9) BASED ON FREE R VALUE (A) : 0.110 REMARK 3 DPI (CRUICKSHANK) BASED ON R VALUE (A) : 0.113 REMARK 3 DPI (CRUICKSHANK) BASED ON FREE R VALUE (A) : 0.109 REMARK 3 REMARK 3 REFERENCES: BLOW, D. (2002) ACTA CRYST D58, 792-797 REMARK 3 CRUICKSHANK, D.W.J. (1999) ACTA CRYST D55, 583-601 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.954 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.941 REMARK 3 REMARK 3 NUMBER OF GEOMETRIC FUNCTION TERMS DEFINED : 15 REMARK 3 TERM COUNT WEIGHT FUNCTION. REMARK 3 BOND LENGTHS : 3584 ; 2.000 ; HARMONIC REMARK 3 BOND ANGLES : 4878 ; 2.000 ; HARMONIC REMARK 3 TORSION ANGLES : 1623 ; 2.000 ; SINUSOIDAL REMARK 3 TRIGONAL CARBON PLANES : 77 ; 2.000 ; HARMONIC REMARK 3 GENERAL PLANES : 531 ; 5.000 ; HARMONIC REMARK 3 ISOTROPIC THERMAL FACTORS : 3584 ; 20.000 ; HARMONIC REMARK 3 BAD NON-BONDED CONTACTS : 0 ; 5.000 ; SEMIHARMONIC REMARK 3 IMPROPER TORSIONS : NULL ; NULL ; NULL REMARK 3 PSEUDOROTATION ANGLES : NULL ; NULL ; NULL REMARK 3 CHIRAL IMPROPER TORSION : 461 ; 5.000 ; SEMIHARMONIC REMARK 3 SUM OF OCCUPANCIES : NULL ; NULL ; NULL REMARK 3 UTILITY DISTANCES : NULL ; NULL ; NULL REMARK 3 UTILITY ANGLES : NULL ; NULL ; NULL REMARK 3 UTILITY TORSION : NULL ; NULL ; NULL REMARK 3 IDEAL-DIST CONTACT TERM : 4361 ; 4.000 ; SEMIHARMONIC REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.010 REMARK 3 BOND ANGLES (DEGREES) : 1.01 REMARK 3 PEPTIDE OMEGA TORSION ANGLES (DEGREES) : 4.11 REMARK 3 OTHER TORSION ANGLES (DEGREES) : 2.61 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4Z0V COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 10-APR-15. REMARK 100 THE DEPOSITION ID IS D_1000208414. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 31-JUL-13 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 21-ID-F REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9787 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : RAYONIX MX-225 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 41250 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.780 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 3.800 REMARK 200 R MERGE (I) : 0.07300 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 16.6940 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.78 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.84 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 3.80 REMARK 200 R MERGE FOR SHELL (I) : 0.40200 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER 2.5.4 REMARK 200 STARTING MODEL: 3NG0 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 44.73 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.23 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.2M MGCL2 0.1M TRIS PH 8.5 24% PEG REMARK 280 3350, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 31.27700 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 TYR A 155 REMARK 465 LYS A 156 REMARK 465 VAL A 157 REMARK 465 GLU A 158 REMARK 465 ARG A 159 REMARK 465 ASN A 160 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ASP A 189 CG OD1 OD2 REMARK 470 LYS A 202 CD CE NZ REMARK 470 LYS A 288 CG CD CE NZ REMARK 470 LYS A 412 CE NZ REMARK 470 GLU A 426 CG CD OE1 OE2 REMARK 470 LYS A 427 CD CE NZ REMARK 470 GLU A 527 CG CD OE1 OE2 REMARK 470 GLU A 582 CG CD OE1 OE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 NH2 ARG A 449 O HOH A 801 1.83 REMARK 500 NZ LYS A 247 O HOH A 802 2.07 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 973 O HOH A 1000 2956 2.05 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LEU A 303 104.85 63.25 REMARK 500 LYS A 377 -89.28 -96.46 REMARK 500 GLN A 378 -74.49 -106.03 REMARK 500 CYS A 530 53.35 -149.55 REMARK 500 GLN A 588 -61.77 70.66 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 701 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 351 OE2 REMARK 620 2 HOH A 809 O 177.3 REMARK 620 3 HOH A 824 O 89.6 89.7 REMARK 620 4 HOH A 848 O 90.9 86.6 96.8 REMARK 620 5 HOH A1008 O 97.1 85.5 92.6 167.7 REMARK 620 6 HOH A1031 O 90.8 89.9 179.5 83.5 87.1 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MG A 701 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL A 702 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL A 703 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL A 704 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL A 705 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL A 706 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL A 707 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4Z2B RELATED DB: PDB DBREF 4Z0V A 155 609 UNP Q6L8Q7 PDE12_HUMAN 155 609 SEQADV 4Z0V A UNP Q6L8Q7 GLU 207 DELETION SEQADV 4Z0V A UNP Q6L8Q7 PRO 208 DELETION SEQADV 4Z0V A UNP Q6L8Q7 GLU 209 DELETION SEQADV 4Z0V A UNP Q6L8Q7 VAL 210 DELETION SEQADV 4Z0V A UNP Q6L8Q7 GLY 211 DELETION SEQADV 4Z0V A UNP Q6L8Q7 VAL 212 DELETION SEQADV 4Z0V A UNP Q6L8Q7 PRO 213 DELETION SEQADV 4Z0V A UNP Q6L8Q7 SER 214 DELETION SEQADV 4Z0V A UNP Q6L8Q7 SER 215 DELETION SEQADV 4Z0V A UNP Q6L8Q7 LEU 216 DELETION SEQADV 4Z0V A UNP Q6L8Q7 SER 217 DELETION SEQADV 4Z0V A UNP Q6L8Q7 PRO 218 DELETION SEQADV 4Z0V A UNP Q6L8Q7 SER 219 DELETION SEQADV 4Z0V A UNP Q6L8Q7 SER 220 DELETION SEQADV 4Z0V A UNP Q6L8Q7 PRO 221 DELETION SEQADV 4Z0V GLY A 207 UNP Q6L8Q7 SER 222 CONFLICT SEQRES 1 A 440 TYR LYS VAL GLU ARG ASN PRO PRO ALA PHE THR GLU LEU SEQRES 2 A 440 GLN LEU PRO ARG TYR ILE MET ALA GLY PHE PRO VAL CYS SEQRES 3 A 440 PRO LYS LEU SER LEU GLU PHE GLY ASP PRO ALA SER SER SEQRES 4 A 440 LEU PHE ARG TRP TYR LYS GLU ALA LYS PRO GLY ALA ALA SEQRES 5 A 440 GLY SER SER TRP THR GLU THR ASP VAL GLU GLU ARG VAL SEQRES 6 A 440 TYR THR PRO SER ASN ALA ASP ILE GLY LEU ARG LEU LYS SEQRES 7 A 440 LEU HIS CYS THR PRO GLY ASP GLY GLN ARG PHE GLY HIS SEQRES 8 A 440 SER ARG GLU LEU GLU SER VAL CYS VAL VAL GLU ALA GLY SEQRES 9 A 440 PRO GLY THR CYS THR PHE ASP HIS ARG HIS LEU TYR THR SEQRES 10 A 440 LYS LYS VAL THR GLU ASP ALA LEU ILE ARG THR VAL SER SEQRES 11 A 440 TYR ASN ILE LEU ALA ASP THR TYR ALA GLN THR GLU PHE SEQRES 12 A 440 SER ARG THR VAL LEU TYR PRO TYR CYS ALA PRO TYR ALA SEQRES 13 A 440 LEU GLU LEU ASP TYR ARG GLN ASN LEU ILE GLN LYS GLU SEQRES 14 A 440 LEU THR GLY TYR ASN ALA ASP VAL ILE CYS LEU GLN GLU SEQRES 15 A 440 VAL ASP ARG ALA VAL PHE SER ASP SER LEU VAL PRO ALA SEQRES 16 A 440 LEU GLU ALA PHE GLY LEU GLU GLY VAL PHE ARG ILE LYS SEQRES 17 A 440 GLN HIS GLU GLY LEU ALA THR PHE TYR ARG LYS SER LYS SEQRES 18 A 440 PHE SER LEU LEU SER GLN HIS ASP ILE SER PHE TYR GLU SEQRES 19 A 440 ALA LEU GLU SER ASP PRO LEU HIS LYS GLU LEU LEU GLU SEQRES 20 A 440 LYS LEU VAL LEU TYR PRO SER ALA GLN GLU LYS VAL LEU SEQRES 21 A 440 GLN ARG SER SER VAL LEU GLN VAL SER VAL LEU GLN SER SEQRES 22 A 440 THR LYS ASP SER SER LYS ARG ILE CYS VAL ALA ASN THR SEQRES 23 A 440 HIS LEU TYR TRP HIS PRO LYS GLY GLY TYR ILE ARG LEU SEQRES 24 A 440 ILE GLN MET ALA VAL ALA LEU ALA HIS ILE ARG HIS VAL SEQRES 25 A 440 SER CYS ASP LEU TYR PRO GLY ILE PRO VAL ILE PHE CYS SEQRES 26 A 440 GLY ASP PHE ASN SER THR PRO SER THR GLY MET TYR HIS SEQRES 27 A 440 PHE VAL ILE ASN GLY SER ILE PRO GLU ASP HIS GLU ASP SEQRES 28 A 440 TRP ALA SER ASN GLY GLU GLU GLU ARG CYS ASN MET SER SEQRES 29 A 440 LEU THR HIS PHE PHE LYS LEU LYS SER ALA CYS GLY GLU SEQRES 30 A 440 PRO ALA TYR THR ASN TYR VAL GLY GLY PHE HIS GLY CYS SEQRES 31 A 440 LEU ASP TYR ILE PHE ILE ASP LEU ASN ALA LEU GLU VAL SEQRES 32 A 440 GLU GLN VAL ILE PRO LEU PRO SER HIS GLU GLU VAL THR SEQRES 33 A 440 THR HIS GLN ALA LEU PRO SER VAL SER HIS PRO SER ASP SEQRES 34 A 440 HIS ILE ALA LEU VAL CYS ASP LEU LYS TRP LYS HET MG A 701 1 HET GOL A 702 6 HET GOL A 703 6 HET GOL A 704 6 HET GOL A 705 6 HET GOL A 706 6 HET GOL A 707 6 HETNAM MG MAGNESIUM ION HETNAM GOL GLYCEROL HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 2 MG MG 2+ FORMUL 3 GOL 6(C3 H8 O3) FORMUL 9 HOH *360(H2 O) HELIX 1 AA1 ASP A 189 SER A 193 5 5 HELIX 2 AA2 SER A 238 ILE A 242 5 5 HELIX 3 AA3 THR A 278 HIS A 283 1 6 HELIX 4 AA4 LEU A 284 THR A 286 5 3 HELIX 5 AA5 ALA A 304 GLN A 309 1 6 HELIX 6 AA6 THR A 310 VAL A 316 1 7 HELIX 7 AA7 ALA A 322 LEU A 326 5 5 HELIX 8 AA8 GLU A 327 TYR A 342 1 16 HELIX 9 AA9 ARG A 354 SER A 360 1 7 HELIX 10 AB1 SER A 360 PHE A 368 1 9 HELIX 11 AB2 PHE A 401 ASP A 408 1 8 HELIX 12 AB3 HIS A 411 LEU A 418 1 8 HELIX 13 AB4 TYR A 421 ARG A 431 1 11 HELIX 14 AB5 GLY A 463 ASP A 484 1 22 HELIX 15 AB6 THR A 503 GLY A 512 1 10 HELIX 16 AB7 HIS A 518 SER A 523 5 6 HELIX 17 AB8 SER A 580 THR A 586 1 7 SHEET 1 AA1 2 ALA A 163 GLN A 168 0 SHEET 2 AA1 2 LYS A 182 GLU A 186 -1 O GLU A 186 N ALA A 163 SHEET 1 AA2 4 TRP A 225 GLU A 227 0 SHEET 2 AA2 4 LEU A 194 GLU A 200 -1 N LYS A 199 O THR A 226 SHEET 3 AA2 4 LEU A 246 THR A 251 -1 O LYS A 247 N TYR A 198 SHEET 4 AA2 4 ARG A 262 GLU A 265 -1 O LEU A 264 N LEU A 248 SHEET 1 AA3 6 LEU A 370 ILE A 376 0 SHEET 2 AA3 6 GLU A 380 ARG A 387 -1 O LEU A 382 N ARG A 375 SHEET 3 AA3 6 VAL A 346 ASP A 353 -1 N LEU A 349 O ALA A 383 SHEET 4 AA3 6 LEU A 294 ASN A 301 1 N VAL A 298 O CYS A 348 SHEET 5 AA3 6 LEU A 602 TRP A 608 -1 O LEU A 602 N SER A 299 SHEET 6 AA3 6 LEU A 570 VAL A 575 -1 N GLU A 571 O LYS A 607 SHEET 1 AA4 3 PHE A 391 GLN A 396 0 SHEET 2 AA4 3 VAL A 434 SER A 442 -1 O VAL A 439 N LEU A 394 SHEET 3 AA4 3 ILE A 399 SER A 400 -1 N ILE A 399 O LEU A 435 SHEET 1 AA5 6 PHE A 391 GLN A 396 0 SHEET 2 AA5 6 VAL A 434 SER A 442 -1 O VAL A 439 N LEU A 394 SHEET 3 AA5 6 ARG A 449 HIS A 456 -1 O ASN A 454 N GLN A 436 SHEET 4 AA5 6 VAL A 491 ASP A 496 1 O ILE A 492 N ALA A 453 SHEET 5 AA5 6 ASP A 561 ASP A 566 -1 O PHE A 564 N PHE A 493 SHEET 6 AA5 6 LEU A 540 SER A 542 -1 N LYS A 541 O ILE A 565 SHEET 1 AA6 2 SER A 513 ILE A 514 0 SHEET 2 AA6 2 LEU A 534 THR A 535 -1 O LEU A 534 N ILE A 514 SHEET 1 AA7 2 ASN A 551 VAL A 553 0 SHEET 2 AA7 2 PHE A 556 GLY A 558 -1 O PHE A 556 N VAL A 553 LINK OE2 GLU A 351 MG MG A 701 1555 1555 2.01 LINK MG MG A 701 O HOH A 809 1555 1555 2.14 LINK MG MG A 701 O HOH A 824 1555 1555 2.11 LINK MG MG A 701 O HOH A 848 1555 1555 2.10 LINK MG MG A 701 O HOH A1008 1555 1555 2.02 LINK MG MG A 701 O HOH A1031 1555 1555 2.13 CISPEP 1 LEU A 590 PRO A 591 0 -6.63 SITE 1 AC1 6 GLU A 351 HOH A 809 HOH A 824 HOH A 848 SITE 2 AC1 6 HOH A1008 HOH A1031 SITE 1 AC2 7 SER A 192 GLY A 253 ASP A 254 GLY A 255 SITE 2 AC2 7 ARG A 257 PHE A 258 HOH A 807 SITE 1 AC3 6 GLN A 396 HIS A 397 ASP A 398 HOH A 861 SITE 2 AC3 6 HOH A 876 HOH A 904 SITE 1 AC4 2 LEU A 393 GLN A 396 SITE 1 AC5 3 ASN A 568 LYS A 609 HOH A 803 SITE 1 AC6 5 TRP A 459 PRO A 461 ARG A 467 ASN A 498 SITE 2 AC6 5 HOH A1047 SITE 1 AC7 4 LYS A 417 LEU A 534 THR A 535 HOH A 922 CRYST1 56.688 62.554 65.393 90.00 110.40 90.00 P 1 21 1 2 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.017640 0.000000 0.006560 0.00000 SCALE2 0.000000 0.015986 0.000000 0.00000 SCALE3 0.000000 0.000000 0.016315 0.00000