HEADER SIGNALING PROTEIN 30-MAR-15 4Z33 TITLE CRYSTAL STRUCTURE OF THE SYNTENIN PDZ1 AND PDZ2 TANDEM IN COMPLEX WITH TITLE 2 THE FRIZZLED 7 C-TERMINAL FRAGMENT AND PIP2 COMPND MOL_ID: 1; COMPND 2 MOLECULE: SYNTENIN-1; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: RESIDUES 111-275; COMPND 5 SYNONYM: MELANOMA DIFFERENTIATION-ASSOCIATED PROTEIN 9,MDA-9,PRO-TGF- COMPND 6 ALPHA CYTOPLASMIC DOMAIN-INTERACTING PROTEIN 18,TACIP18,SCAFFOLD COMPND 7 PROTEIN PBP1,SYNDECAN-BINDING PROTEIN 1; COMPND 8 ENGINEERED: YES; COMPND 9 MOL_ID: 2; COMPND 10 MOLECULE: LYS-GLY-GLU-THR-ALA-VAL; COMPND 11 CHAIN: C, D; COMPND 12 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: SDCBP, MDA9, SYCL; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 511693; SOURCE 8 MOL_ID: 2; SOURCE 9 SYNTHETIC: YES; SOURCE 10 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 11 ORGANISM_TAXID: 9606 KEYWDS SYNTENIN, PDZ, PIP2, FRIZZLE 7, SIGNALING PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR A.L.EGEA-JIMENEZ,R.GALLARDO,A.GARCIA-PINO,Y.IVARSSON,A.M.WAWRZYNIAK, AUTHOR 2 R.KASHYAP,R.LORIS,J.SCHYMKOWITZ,F.ROUSSEAU,P.ZIMMERMANN REVDAT 4 10-JAN-24 4Z33 1 REMARK REVDAT 3 17-JUL-19 4Z33 1 REMARK REVDAT 2 31-JAN-18 4Z33 1 REMARK REVDAT 1 29-JUN-16 4Z33 0 JRNL AUTH A.L.EGEA-JIMENEZ,R.GALLARDO,A.GARCIA-PINO,Y.IVARSSON, JRNL AUTH 2 A.M.WAWRZYNIAK,R.KASHYAP,R.LORIS,J.SCHYMKOWITZ,F.ROUSSEAU, JRNL AUTH 3 P.ZIMMERMANN JRNL TITL CRYSTAL STRUCTURE OF THE SYNTENIN PDZ1 AND PDZ2 TANDEM IN JRNL TITL 2 COMPLEX WITH THE FRIZZLED 7 C-TERMINAL FRAGMENT AND PIP2 JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 2.45 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : BUSTER 2.10.2 REMARK 3 AUTHORS : BRICOGNE,BLANC,BRANDL,FLENSBURG,KELLER, REMARK 3 : PACIOREK,ROVERSI,SHARFF,SMART,VONRHEIN, REMARK 3 : WOMACK,MATTHEWS,TEN EYCK,TRONRUD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.45 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 19.97 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 3 NUMBER OF REFLECTIONS : 12689 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.184 REMARK 3 R VALUE (WORKING SET) : 0.181 REMARK 3 FREE R VALUE : 0.239 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.890 REMARK 3 FREE R VALUE TEST SET COUNT : 620 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 6 REMARK 3 BIN RESOLUTION RANGE HIGH (ANGSTROMS) : 2.45 REMARK 3 BIN RESOLUTION RANGE LOW (ANGSTROMS) : 2.68 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.85 REMARK 3 REFLECTIONS IN BIN (WORKING + TEST SET) : 2963 REMARK 3 BIN R VALUE (WORKING + TEST SET) : 0.2160 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 2827 REMARK 3 BIN R VALUE (WORKING SET) : 0.2122 REMARK 3 BIN FREE R VALUE : 0.2991 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 4.59 REMARK 3 BIN FREE R VALUE TEST SET COUNT : 136 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2522 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 48 REMARK 3 SOLVENT ATOMS : 163 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 52.63 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 46.06 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 2.39930 REMARK 3 B22 (A**2) : 2.39930 REMARK 3 B33 (A**2) : -4.79860 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.326 REMARK 3 DPI (BLOW EQ-10) BASED ON R VALUE (A) : 1.019 REMARK 3 DPI (BLOW EQ-9) BASED ON FREE R VALUE (A) : 0.281 REMARK 3 DPI (CRUICKSHANK) BASED ON R VALUE (A) : 0.569 REMARK 3 DPI (CRUICKSHANK) BASED ON FREE R VALUE (A) : 0.273 REMARK 3 REMARK 3 REFERENCES: BLOW, D. (2002) ACTA CRYST D58, 792-797 REMARK 3 CRUICKSHANK, D.W.J. (1999) ACTA CRYST D55, 583-601 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.951 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.924 REMARK 3 REMARK 3 NUMBER OF GEOMETRIC FUNCTION TERMS DEFINED : 15 REMARK 3 TERM COUNT WEIGHT FUNCTION. REMARK 3 BOND LENGTHS : 2618 ; 2.000 ; HARMONIC REMARK 3 BOND ANGLES : 3537 ; 2.000 ; HARMONIC REMARK 3 TORSION ANGLES : 914 ; 2.000 ; SINUSOIDAL REMARK 3 TRIGONAL CARBON PLANES : 65 ; 2.000 ; HARMONIC REMARK 3 GENERAL PLANES : 386 ; 5.000 ; HARMONIC REMARK 3 ISOTROPIC THERMAL FACTORS : 2618 ; 20.000 ; HARMONIC REMARK 3 BAD NON-BONDED CONTACTS : NULL ; NULL ; NULL REMARK 3 IMPROPER TORSIONS : NULL ; NULL ; NULL REMARK 3 PSEUDOROTATION ANGLES : NULL ; NULL ; NULL REMARK 3 CHIRAL IMPROPER TORSION : 378 ; 5.000 ; SEMIHARMONIC REMARK 3 SUM OF OCCUPANCIES : NULL ; NULL ; NULL REMARK 3 UTILITY DISTANCES : NULL ; NULL ; NULL REMARK 3 UTILITY ANGLES : NULL ; NULL ; NULL REMARK 3 UTILITY TORSION : NULL ; NULL ; NULL REMARK 3 IDEAL-DIST CONTACT TERM : 3201 ; 4.000 ; SEMIHARMONIC REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.010 REMARK 3 BOND ANGLES (DEGREES) : 1.24 REMARK 3 PEPTIDE OMEGA TORSION ANGLES (DEGREES) : 2.95 REMARK 3 OTHER TORSION ANGLES (DEGREES) : 19.57 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 2 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: { A|* } REMARK 3 ORIGIN FOR THE GROUP (A): 21.7856 -34.3689 -9.2025 REMARK 3 T TENSOR REMARK 3 T11: -0.0852 T22: -0.0668 REMARK 3 T33: -0.0440 T12: -0.0322 REMARK 3 T13: 0.0289 T23: -0.0122 REMARK 3 L TENSOR REMARK 3 L11: 1.4895 L22: 2.8351 REMARK 3 L33: 1.7242 L12: -0.8563 REMARK 3 L13: -1.2081 L23: 0.7066 REMARK 3 S TENSOR REMARK 3 S11: -0.2766 S12: 0.1255 S13: -0.2687 REMARK 3 S21: 0.0490 S22: 0.1186 S23: 0.4503 REMARK 3 S31: 0.2943 S32: -0.1356 S33: 0.1580 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: { B|* } REMARK 3 ORIGIN FOR THE GROUP (A): 9.0636 -9.4879 -18.3745 REMARK 3 T TENSOR REMARK 3 T11: -0.0608 T22: -0.0899 REMARK 3 T33: -0.0510 T12: 0.0070 REMARK 3 T13: 0.0180 T23: 0.0006 REMARK 3 L TENSOR REMARK 3 L11: 3.8107 L22: 1.6926 REMARK 3 L33: 0.4793 L12: 1.5631 REMARK 3 L13: 0.5844 L23: 0.2956 REMARK 3 S TENSOR REMARK 3 S11: -0.0899 S12: 0.0147 S13: -0.5481 REMARK 3 S21: -0.0272 S22: 0.2362 S23: -0.4367 REMARK 3 S31: -0.0150 S32: 0.1084 S33: -0.1464 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4Z33 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 02-APR-15. REMARK 100 THE DEPOSITION ID IS D_1000208498. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 10-APR-06 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 5.6 REMARK 200 NUMBER OF CRYSTALS USED : NULL REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : EMBL/DESY, HAMBURG REMARK 200 BEAMLINE : X13 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.8123 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MAR CCD 165 MM REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 12233 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.450 REMARK 200 RESOLUTION RANGE LOW (A) : 20.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.6 REMARK 200 DATA REDUNDANCY : 12.40 REMARK 200 R MERGE (I) : 0.18000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 15.3000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.45 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.54 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.7 REMARK 200 DATA REDUNDANCY IN SHELL : 13.10 REMARK 200 R MERGE FOR SHELL (I) : 0.85000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 4.230 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 1N99 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 43.38 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.17 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.2 M AMMONIUM ACETATE, 0.1 M SODIUM REMARK 280 CITRATE TRIBASIC DIHYDRATE AND 32,5% (W/V) PEG 4.000, PH 5.6, REMARK 280 VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 41 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y+1/2,X+1/2,Z+1/4 REMARK 290 4555 Y+1/2,-X+1/2,Z+3/4 REMARK 290 5555 -X+1/2,Y+1/2,-Z+1/4 REMARK 290 6555 X+1/2,-Y+1/2,-Z+3/4 REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 63.18000 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 35.87200 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 35.87200 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 31.59000 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 35.87200 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 35.87200 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 94.77000 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 35.87200 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 35.87200 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 31.59000 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 35.87200 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 35.87200 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 94.77000 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 63.18000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1370 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 8980 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -5.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1200 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 8710 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -5.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: B, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 SER B 110 REMARK 465 LYS D 1 REMARK 465 GLY D 2 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 119 CE NZ REMARK 470 GLN A 121 CB CG CD OE1 NE2 REMARK 470 ASP A 122 CB CG OD1 OD2 REMARK 470 LYS A 124 CE NZ REMARK 470 ARG A 128 CG CD NE CZ NH1 NH2 REMARK 470 LYS A 179 CE NZ REMARK 470 GLU A 184 CG CD OE1 OE2 REMARK 470 LYS A 185 CB CG CD CE NZ REMARK 470 LYS A 223 CG CD CE NZ REMARK 470 PHE A 275 CG CD1 CD2 CE1 CE2 CZ REMARK 470 LYS B 124 CD CE NZ REMARK 470 ARG B 128 CG CD NE CZ NH1 NH2 REMARK 470 LYS B 179 CE NZ REMARK 470 GLU B 184 CG CD OE1 OE2 REMARK 470 LYS B 185 CG CD CE NZ REMARK 470 LYS B 223 CG CD CE NZ REMARK 470 GLU B 235 CG CD OE1 OE2 REMARK 470 LYS B 250 CE NZ REMARK 470 GLN B 253 CG CD OE1 NE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OD1 ASN A 215 O3 IP2 A 304 1.95 REMARK 500 OG SER A 252 NZ LYS C 1 2.14 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 120 176.78 -57.40 REMARK 500 GLN A 180 23.53 -79.61 REMARK 500 GLN A 180 21.18 -77.49 REMARK 500 ALA A 181 -163.59 -77.93 REMARK 500 GLU A 184 1.28 -57.19 REMARK 500 ARG A 193 79.37 10.14 REMARK 500 GLN B 121 -9.52 -56.54 REMARK 500 LEU B 140 131.96 -173.03 REMARK 500 GLU B 184 73.61 -156.32 REMARK 500 LYS B 185 90.13 -165.89 REMARK 500 ARG B 193 78.35 6.95 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ACT A 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL A 302 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL A 303 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue IP2 A 304 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ACT B 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ACT B 302 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ACT B 303 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1N99 RELATED DB: PDB REMARK 900 1N99 CONTAINS THE SAME PROTEIN DBREF 4Z33 A 111 275 UNP O00560 SDCB1_HUMAN 111 275 DBREF 4Z33 B 111 275 UNP O00560 SDCB1_HUMAN 111 275 DBREF 4Z33 C 1 6 PDB 4Z33 4Z33 1 6 DBREF 4Z33 D 1 6 PDB 4Z33 4Z33 1 6 SEQADV 4Z33 SER A 110 UNP O00560 EXPRESSION TAG SEQADV 4Z33 SER B 110 UNP O00560 EXPRESSION TAG SEQRES 1 A 166 SER GLY ILE ARG GLU VAL ILE LEU CYS LYS ASP GLN ASP SEQRES 2 A 166 GLY LYS ILE GLY LEU ARG LEU LYS SER ILE ASP ASN GLY SEQRES 3 A 166 ILE PHE VAL GLN LEU VAL GLN ALA ASN SER PRO ALA SER SEQRES 4 A 166 LEU VAL GLY LEU ARG PHE GLY ASP GLN VAL LEU GLN ILE SEQRES 5 A 166 ASN GLY GLU ASN CYS ALA GLY TRP SER SER ASP LYS ALA SEQRES 6 A 166 HIS LYS VAL LEU LYS GLN ALA PHE GLY GLU LYS ILE THR SEQRES 7 A 166 MET THR ILE ARG ASP ARG PRO PHE GLU ARG THR ILE THR SEQRES 8 A 166 MET HIS LYS ASP SER THR GLY HIS VAL GLY PHE ILE PHE SEQRES 9 A 166 LYS ASN GLY LYS ILE THR SER ILE VAL LYS ASP SER SER SEQRES 10 A 166 ALA ALA ARG ASN GLY LEU LEU THR GLU HIS ASN ILE CYS SEQRES 11 A 166 GLU ILE ASN GLY GLN ASN VAL ILE GLY LEU LYS ASP SER SEQRES 12 A 166 GLN ILE ALA ASP ILE LEU SER THR SER GLY THR VAL VAL SEQRES 13 A 166 THR ILE THR ILE MET PRO ALA PHE ILE PHE SEQRES 1 B 166 SER GLY ILE ARG GLU VAL ILE LEU CYS LYS ASP GLN ASP SEQRES 2 B 166 GLY LYS ILE GLY LEU ARG LEU LYS SER ILE ASP ASN GLY SEQRES 3 B 166 ILE PHE VAL GLN LEU VAL GLN ALA ASN SER PRO ALA SER SEQRES 4 B 166 LEU VAL GLY LEU ARG PHE GLY ASP GLN VAL LEU GLN ILE SEQRES 5 B 166 ASN GLY GLU ASN CYS ALA GLY TRP SER SER ASP LYS ALA SEQRES 6 B 166 HIS LYS VAL LEU LYS GLN ALA PHE GLY GLU LYS ILE THR SEQRES 7 B 166 MET THR ILE ARG ASP ARG PRO PHE GLU ARG THR ILE THR SEQRES 8 B 166 MET HIS LYS ASP SER THR GLY HIS VAL GLY PHE ILE PHE SEQRES 9 B 166 LYS ASN GLY LYS ILE THR SER ILE VAL LYS ASP SER SER SEQRES 10 B 166 ALA ALA ARG ASN GLY LEU LEU THR GLU HIS ASN ILE CYS SEQRES 11 B 166 GLU ILE ASN GLY GLN ASN VAL ILE GLY LEU LYS ASP SER SEQRES 12 B 166 GLN ILE ALA ASP ILE LEU SER THR SER GLY THR VAL VAL SEQRES 13 B 166 THR ILE THR ILE MET PRO ALA PHE ILE PHE SEQRES 1 C 6 LYS GLY GLU THR ALA VAL SEQRES 1 D 6 LYS GLY GLU THR ALA VAL HET ACT A 301 4 HET GOL A 302 6 HET GOL A 303 6 HET IP2 A 304 20 HET ACT B 301 4 HET ACT B 302 4 HET ACT B 303 4 HETNAM ACT ACETATE ION HETNAM GOL GLYCEROL HETNAM IP2 D-MYO-INOSITOL-4,5-BISPHOSPHATE HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 5 ACT 4(C2 H3 O2 1-) FORMUL 6 GOL 2(C3 H8 O3) FORMUL 8 IP2 C6 H14 O12 P2 FORMUL 12 HOH *163(H2 O) HELIX 1 AA1 SER A 145 VAL A 150 1 6 HELIX 2 AA2 SER A 170 GLN A 180 1 11 HELIX 3 AA3 SER A 225 ASN A 230 1 6 HELIX 4 AA4 LYS A 250 THR A 260 1 11 HELIX 5 AA5 PHE A 273 PHE A 275 5 3 HELIX 6 AA6 SER B 145 VAL B 150 1 6 HELIX 7 AA7 SER B 170 ALA B 181 1 12 HELIX 8 AA8 SER B 225 ASN B 230 1 6 HELIX 9 AA9 LYS B 250 SER B 261 1 12 HELIX 10 AB1 PHE B 273 PHE B 275 5 3 SHEET 1 AA1 5 ILE A 112 LEU A 117 0 SHEET 2 AA1 5 ILE A 186 ARG A 191 -1 O ILE A 186 N LEU A 117 SHEET 3 AA1 5 GLN A 157 ILE A 161 -1 N GLN A 157 O ARG A 191 SHEET 4 AA1 5 GLY A 135 VAL A 141 -1 N ILE A 136 O VAL A 158 SHEET 5 AA1 5 LEU A 127 ILE A 132 -1 N ARG A 128 O GLN A 139 SHEET 1 AA2 4 ILE A 112 LEU A 117 0 SHEET 2 AA2 4 ILE A 186 ARG A 191 -1 O ILE A 186 N LEU A 117 SHEET 3 AA2 4 GLN A 157 ILE A 161 -1 N GLN A 157 O ARG A 191 SHEET 4 AA2 4 GLU A 164 ASN A 165 -1 O GLU A 164 N ILE A 161 SHEET 1 AA3 4 ARG A 197 HIS A 202 0 SHEET 2 AA3 4 VAL A 264 PRO A 271 -1 O VAL A 265 N MET A 201 SHEET 3 AA3 4 HIS A 236 ILE A 241 -1 N CYS A 239 O THR A 268 SHEET 4 AA3 4 GLN A 244 ASN A 245 -1 O GLN A 244 N ILE A 241 SHEET 1 AA4 6 ARG A 197 HIS A 202 0 SHEET 2 AA4 6 VAL A 264 PRO A 271 -1 O VAL A 265 N MET A 201 SHEET 3 AA4 6 HIS A 236 ILE A 241 -1 N CYS A 239 O THR A 268 SHEET 4 AA4 6 LYS A 217 ILE A 221 -1 N ILE A 218 O HIS A 236 SHEET 5 AA4 6 PHE A 211 LYS A 214 -1 N ILE A 212 O THR A 219 SHEET 6 AA4 6 THR C 4 VAL C 6 -1 O VAL C 6 N PHE A 211 SHEET 1 AA5 5 ILE B 112 LEU B 117 0 SHEET 2 AA5 5 ILE B 186 ARG B 191 -1 O ILE B 190 N ARG B 113 SHEET 3 AA5 5 GLN B 157 ILE B 161 -1 N GLN B 157 O ARG B 191 SHEET 4 AA5 5 GLY B 135 VAL B 141 -1 N ILE B 136 O VAL B 158 SHEET 5 AA5 5 LEU B 127 ILE B 132 -1 N ARG B 128 O GLN B 139 SHEET 1 AA6 4 ILE B 112 LEU B 117 0 SHEET 2 AA6 4 ILE B 186 ARG B 191 -1 O ILE B 190 N ARG B 113 SHEET 3 AA6 4 GLN B 157 ILE B 161 -1 N GLN B 157 O ARG B 191 SHEET 4 AA6 4 GLU B 164 ASN B 165 -1 O GLU B 164 N ILE B 161 SHEET 1 AA7 4 ARG B 197 HIS B 202 0 SHEET 2 AA7 4 VAL B 264 PRO B 271 -1 O VAL B 265 N MET B 201 SHEET 3 AA7 4 HIS B 236 ILE B 241 -1 N CYS B 239 O THR B 268 SHEET 4 AA7 4 GLN B 244 ASN B 245 -1 O GLN B 244 N ILE B 241 SHEET 1 AA8 6 ARG B 197 HIS B 202 0 SHEET 2 AA8 6 VAL B 264 PRO B 271 -1 O VAL B 265 N MET B 201 SHEET 3 AA8 6 HIS B 236 ILE B 241 -1 N CYS B 239 O THR B 268 SHEET 4 AA8 6 LYS B 217 ILE B 221 -1 N ILE B 218 O HIS B 236 SHEET 5 AA8 6 PHE B 211 LYS B 214 -1 N ILE B 212 O THR B 219 SHEET 6 AA8 6 THR D 4 ALA D 5 -1 O THR D 4 N PHE B 213 SITE 1 AC1 5 LYS A 173 ASP A 256 SER A 259 HOH A 411 SITE 2 AC1 5 LYS B 176 SITE 1 AC2 5 HIS A 202 SER A 226 ARG A 229 ASN A 230 SITE 2 AC2 5 HOH A 431 SITE 1 AC3 5 LYS A 124 ILE A 125 GLY A 126 LEU A 127 SITE 2 AC3 5 HOH A 447 SITE 1 AC4 4 ASN A 215 LYS A 250 ASP A 251 LYS C 1 SITE 1 AC5 4 LYS B 124 ILE B 125 GLY B 126 LEU B 127 SITE 1 AC6 7 ASN B 144 SER B 145 HIS B 202 SER B 226 SITE 2 AC6 7 ARG B 229 ASN B 230 HOH B 446 SITE 1 AC7 3 LEU B 249 LYS B 250 GLN B 253 CRYST1 71.744 71.744 126.360 90.00 90.00 90.00 P 41 21 2 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.013938 0.000000 0.000000 0.00000 SCALE2 0.000000 0.013938 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007914 0.00000