HEADER SUGAR BINDING PROTEIN 31-MAR-15 4Z3E TITLE CRYSTAL STRUCTURE OF THE LECTIN DOMAIN OF PAPG FROM E. COLI BI47 IN TITLE 2 COMPLEX WITH SSEA4 IN SPACE GROUP P212121 COMPND MOL_ID: 1; COMPND 2 MOLECULE: PAPG, LECTIN DOMAIN; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: RESIDUES 20-216; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ESCHERICHIA COLI; SOURCE 3 ORGANISM_TAXID: 562; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 5 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 6 EXPRESSION_SYSTEM_VARIANT: ADA494; SOURCE 7 EXPRESSION_SYSTEM_PLASMID: PET-22B KEYWDS UPEC, URINARY TRACT INFECTION, FIMBRIAL ADHESIN, ADHESIN, TYPE I KEYWDS 2 PILI, PAPG, CARBOHYDRATE BINDING, SUGAR BINDING PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR R.P.JAKOB,G.NAVARRA,P.ZIHLMANN,K.STANGIER,R.C.PRESTON,S.RABBANI, AUTHOR 2 T.MAIER,B.ERNST REVDAT 6 10-JAN-24 4Z3E 1 HETSYN LINK REVDAT 5 29-JUL-20 4Z3E 1 COMPND REMARK HETNAM LINK REVDAT 5 2 1 SITE ATOM REVDAT 4 29-MAR-17 4Z3E 1 JRNL REVDAT 3 15-FEB-17 4Z3E 1 JRNL REVDAT 2 25-JAN-17 4Z3E 1 JRNL REVDAT 1 13-APR-16 4Z3E 0 JRNL AUTH G.NAVARRA,P.ZIHLMANN,R.P.JAKOB,K.STANGIER,R.C.PRESTON, JRNL AUTH 2 S.RABBANI,M.SMIESKO,B.WAGNER,T.MAIER,B.ERNST JRNL TITL CARBOHYDRATE-LECTIN INTERACTIONS: AN UNEXPECTED CONTRIBUTION JRNL TITL 2 TO AFFINITY. JRNL REF CHEMBIOCHEM V. 18 539 2017 JRNL REFN ESSN 1439-7633 JRNL PMID 28076665 JRNL DOI 10.1002/CBIC.201600615 REMARK 2 REMARK 2 RESOLUTION. 1.80 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0103 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.80 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 43.10 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 3 NUMBER OF REFLECTIONS : 17523 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.180 REMARK 3 R VALUE (WORKING SET) : 0.178 REMARK 3 FREE R VALUE : 0.224 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 923 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.80 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.85 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1238 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.10 REMARK 3 BIN R VALUE (WORKING SET) : 0.3000 REMARK 3 BIN FREE R VALUE SET COUNT : 78 REMARK 3 BIN FREE R VALUE : 0.4100 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1608 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 59 REMARK 3 SOLVENT ATOMS : 202 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 28.14 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.44000 REMARK 3 B22 (A**2) : -0.25000 REMARK 3 B33 (A**2) : 0.68000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.144 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.136 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.108 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 7.971 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.960 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.938 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 1785 ; 0.026 ; 0.020 REMARK 3 BOND LENGTHS OTHERS (A): 1607 ; 0.002 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 2447 ; 2.365 ; 1.964 REMARK 3 BOND ANGLES OTHERS (DEGREES): 3711 ; 1.124 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 210 ; 8.109 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 85 ;35.814 ;23.529 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 268 ;14.154 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 10 ;17.978 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 265 ; 0.132 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2014 ; 0.014 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 450 ; 0.002 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 822 ; 1.609 ; 1.884 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 821 ; 1.604 ; 1.881 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 1038 ; 2.460 ; 2.806 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 1039 ; 2.459 ; 2.810 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 963 ; 1.937 ; 2.012 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 963 ; 1.937 ; 2.012 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 1410 ; 3.013 ; 2.954 REMARK 3 LONG RANGE B REFINED ATOMS (A**2): 2059 ; 5.481 ;15.766 REMARK 3 LONG RANGE B OTHER ATOMS (A**2): 1992 ; 5.083 ;15.335 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 1 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A -1 A 195 REMARK 3 ORIGIN FOR THE GROUP (A): 59.3832 9.9215 18.1800 REMARK 3 T TENSOR REMARK 3 T11: 0.0347 T22: 0.0370 REMARK 3 T33: 0.0634 T12: -0.0256 REMARK 3 T13: -0.0347 T23: 0.0140 REMARK 3 L TENSOR REMARK 3 L11: 2.1414 L22: 0.9384 REMARK 3 L33: 0.3039 L12: 0.6328 REMARK 3 L13: -0.3853 L23: -0.0252 REMARK 3 S TENSOR REMARK 3 S11: 0.1283 S12: -0.1897 S13: 0.0799 REMARK 3 S21: 0.0119 S22: -0.0265 S23: 0.1050 REMARK 3 S31: 0.0416 S32: 0.0279 S33: -0.1018 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 4Z3E COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 01-APR-15. REMARK 100 THE DEPOSITION ID IS D_1000208533. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 20-NOV-13 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : NULL REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SLS REMARK 200 BEAMLINE : X06DA REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.00004 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 2M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 17523 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.800 REMARK 200 RESOLUTION RANGE LOW (A) : 43.100 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 8.500 REMARK 200 R MERGE (I) : 0.08100 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 19.3000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.80 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.91 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.5 REMARK 200 DATA REDUNDANCY IN SHELL : 12.80 REMARK 200 R MERGE FOR SHELL (I) : 0.68000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 3.500 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 1J8S REMARK 200 REMARK 200 REMARK: PLATE REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 39.55 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.03 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.15M ZNACETATE, 0.05M ZNCL2, 0.1MTRIS REMARK 280 PH 7.5, 13% PEG6000, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE REMARK 280 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 24.10500 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 38.16000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 26.11000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 38.16000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 24.10500 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 26.11000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1350 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 9880 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: 13.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 196 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OH TYR A 15 O HOH A 301 0.98 REMARK 500 CZ TYR A 15 O HOH A 301 1.98 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 CB ALA A 0 OH TYR A 76 2754 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 GLU A 123 CD GLU A 123 OE2 0.070 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 CYS A 118 63.83 -151.89 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 500 DISTANCE = 6.14 ANGSTROMS REMARK 525 HOH A 501 DISTANCE = 6.84 ANGSTROMS REMARK 525 HOH A 502 DISTANCE = 7.97 ANGSTROMS DBREF 4Z3E A 0 196 UNP T7DCJ2 T7DCJ2_ECOLX 20 216 SEQADV 4Z3E MET A -1 UNP T7DCJ2 EXPRESSION TAG SEQADV 4Z3E GLN A 109 UNP T7DCJ2 GLU 129 CONFLICT SEQRES 1 A 198 MET ALA TRP ASN ASN ILE VAL PHE TYR SER LEU GLY ASP SEQRES 2 A 198 VAL ASN SER TYR GLN GLY GLY ASN VAL VAL ILE THR GLN SEQRES 3 A 198 ARG PRO GLN PHE ILE THR SER TRP ARG PRO GLY ILE ALA SEQRES 4 A 198 THR VAL THR TRP ASN GLN CYS ASN GLY PRO GLU PHE ALA SEQRES 5 A 198 ASP GLY SER TRP ALA TYR TYR ARG GLU TYR ILE ALA TRP SEQRES 6 A 198 VAL VAL PHE PRO LYS LYS VAL MET THR LYS ASN GLY TYR SEQRES 7 A 198 PRO LEU PHE ILE GLU VAL HIS ASN LYS GLY SER TRP SER SEQRES 8 A 198 GLU GLU ASN THR GLY ASP ASN ASP SER TYR PHE PHE LEU SEQRES 9 A 198 LYS GLY TYR LYS TRP ASP GLN ARG ALA PHE ASP THR ALA SEQRES 10 A 198 ASN LEU CYS GLN LYS PRO GLY GLU THR THR ARG LEU THR SEQRES 11 A 198 GLU LYS PHE ASP ASP ILE ILE PHE LYS VAL ALA LEU PRO SEQRES 12 A 198 ALA ASP LEU PRO LEU GLY ASP TYR SER VAL THR ILE PRO SEQRES 13 A 198 TYR THR SER GLY ILE GLN ARG HIS PHE ALA SER TYR LEU SEQRES 14 A 198 GLY ALA ARG PHE LYS ILE PRO TYR ASN VAL ALA LYS THR SEQRES 15 A 198 LEU PRO ARG GLU ASN GLU MET LEU PHE LEU PHE LYS ASN SEQRES 16 A 198 ILE GLY GLY HET BGC B 1 12 HET GAL B 2 11 HET GLA B 3 11 HET NGA B 4 14 HET GAL B 5 11 HETNAM BGC BETA-D-GLUCOPYRANOSE HETNAM GAL BETA-D-GALACTOPYRANOSE HETNAM GLA ALPHA-D-GALACTOPYRANOSE HETNAM NGA 2-ACETAMIDO-2-DEOXY-BETA-D-GALACTOPYRANOSE HETSYN BGC BETA-D-GLUCOSE; D-GLUCOSE; GLUCOSE HETSYN GAL BETA-D-GALACTOSE; D-GALACTOSE; GALACTOSE HETSYN GLA ALPHA-D-GALACTOSE; D-GALACTOSE; GALACTOSE; ALPHA D- HETSYN 2 GLA GALACTOSE HETSYN NGA N-ACETYL-BETA-D-GALACTOSAMINE; 2-ACETAMIDO-2-DEOXY- HETSYN 2 NGA BETA-D-GALACTOSE; 2-ACETAMIDO-2-DEOXY-D-GALACTOSE; 2- HETSYN 3 NGA ACETAMIDO-2-DEOXY-GALACTOSE; N-ACETYL-D-GALACTOSAMINE FORMUL 2 BGC C6 H12 O6 FORMUL 2 GAL 2(C6 H12 O6) FORMUL 2 GLA C6 H12 O6 FORMUL 2 NGA C8 H15 N O6 FORMUL 3 HOH *202(H2 O) HELIX 1 AA1 PRO A 174 THR A 180 1 7 SHEET 1 AA1 6 VAL A 12 VAL A 21 0 SHEET 2 AA1 6 ASN A 185 ILE A 194 1 O LEU A 190 N GLY A 17 SHEET 3 AA1 6 GLY A 147 ALA A 164 -1 N ILE A 153 O MET A 187 SHEET 4 AA1 6 TYR A 56 PRO A 67 -1 N ILE A 61 O GLN A 160 SHEET 5 AA1 6 SER A 98 ALA A 111 -1 O TYR A 99 N PHE A 66 SHEET 6 AA1 6 SER A 89 GLU A 91 -1 N SER A 89 O LEU A 102 SHEET 1 AA2 6 VAL A 12 VAL A 21 0 SHEET 2 AA2 6 ASN A 185 ILE A 194 1 O LEU A 190 N GLY A 17 SHEET 3 AA2 6 GLY A 147 ALA A 164 -1 N ILE A 153 O MET A 187 SHEET 4 AA2 6 ASN A 2 LEU A 9 -1 N ASN A 3 O PHE A 163 SHEET 5 AA2 6 GLY A 35 CYS A 44 -1 O TRP A 41 N PHE A 6 SHEET 6 AA2 6 THR A 124 LEU A 127 -1 O LEU A 127 N GLY A 35 SHEET 1 AA3 4 GLN A 27 THR A 30 0 SHEET 2 AA3 4 ILE A 134 ALA A 139 -1 O ILE A 134 N THR A 30 SHEET 3 AA3 4 PRO A 77 ASN A 84 -1 N HIS A 83 O ILE A 135 SHEET 4 AA3 4 LYS A 69 MET A 71 -1 N VAL A 70 O LEU A 78 SHEET 1 AA4 2 PHE A 49 ALA A 50 0 SHEET 2 AA4 2 ALA A 115 ASN A 116 -1 O ALA A 115 N ALA A 50 SSBOND 1 CYS A 44 CYS A 118 1555 1555 2.06 LINK O4 BGC B 1 C1 GAL B 2 1555 1555 1.42 LINK O4 GAL B 2 C1 GLA B 3 1555 1555 1.45 LINK O3 GLA B 3 C1 NGA B 4 1555 1555 1.43 LINK O3 NGA B 4 C1 GAL B 5 1555 1555 1.43 CRYST1 48.210 52.220 76.320 90.00 90.00 90.00 P 21 21 21 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.020743 0.000000 0.000000 0.00000 SCALE2 0.000000 0.019150 0.000000 0.00000 SCALE3 0.000000 0.000000 0.013103 0.00000