HEADER ODORANT BINDING PROTEIN 01-APR-15 4Z45 TITLE STRUCTURE OF OBP3 FROM THE CURRANT-LETTUCE APHID NASONOVIA RIBISNIGRI COMPND MOL_ID: 1; COMPND 2 MOLECULE: ODORANT-BINDING PROTEIN NRIBOBP3; COMPND 3 CHAIN: A, B, D; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: NASONOVIA RIBISNIGRI; SOURCE 3 ORGANISM_COMMON: LETTUCE APHID; SOURCE 4 ORGANISM_TAXID: 269403; SOURCE 5 GENE: OBP3; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_VARIANT: PLYSS; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PET17B KEYWDS ODORANT BINDING PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR T.NORTHEY,H.VENTHUR,F.DE BIASIO,F.-X.CHAUVIAC,A.R.COLE,L.M.FIELD,J.- AUTHOR 2 J.ZHOU,N.H.KEEP REVDAT 5 08-MAY-19 4Z45 1 LINK REVDAT 4 30-AUG-17 4Z45 1 REMARK SSBOND LINK REVDAT 3 27-JUL-16 4Z45 1 JRNL REVDAT 2 20-APR-16 4Z45 1 JRNL REVDAT 1 13-APR-16 4Z45 0 JRNL AUTH T.NORTHEY,H.VENTHUR,F.DE BIASIO,F.X.CHAUVIAC,A.COLE, JRNL AUTH 2 K.A.RIBEIRO,G.GROSSI,P.FALABELLA,L.M.FIELD,N.H.KEEP,J.J.ZHOU JRNL TITL CRYSTAL STRUCTURES AND BINDING DYNAMICS OF ODORANT-BINDING JRNL TITL 2 PROTEIN 3 FROM TWO APHID SPECIES MEGOURA VICIAE AND JRNL TITL 3 NASONOVIA RIBISNIGRI. JRNL REF SCI REP V. 6 24739 2016 JRNL REFN ESSN 2045-2322 JRNL PMID 27102935 JRNL DOI 10.1038/SREP24739 REMARK 2 REMARK 2 RESOLUTION. 2.02 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0107 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.02 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 59.16 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 3 NUMBER OF REFLECTIONS : 26520 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.166 REMARK 3 R VALUE (WORKING SET) : 0.164 REMARK 3 FREE R VALUE : 0.207 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1402 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.02 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.07 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1946 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 100.0 REMARK 3 BIN R VALUE (WORKING SET) : 0.1940 REMARK 3 BIN FREE R VALUE SET COUNT : 110 REMARK 3 BIN FREE R VALUE : 0.2460 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2767 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 366 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 25.48 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.37000 REMARK 3 B22 (A**2) : -0.37000 REMARK 3 B33 (A**2) : 1.19000 REMARK 3 B12 (A**2) : -0.18000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.162 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.148 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.093 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 6.211 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.953 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.928 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2887 ; 0.026 ; 0.020 REMARK 3 BOND LENGTHS OTHERS (A): 2720 ; 0.014 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 3917 ; 2.116 ; 1.974 REMARK 3 BOND ANGLES OTHERS (DEGREES): 6336 ; 1.969 ; 3.002 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 377 ; 9.460 ; 5.053 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 117 ;32.055 ;26.581 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 562 ;12.332 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 3 ; 7.300 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 448 ; 0.127 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 3213 ; 0.014 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 578 ; 0.011 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1435 ; 1.532 ; 1.615 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 1434 ; 1.531 ; 1.613 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 1795 ; 2.353 ; 2.397 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 1796 ; 2.353 ; 2.399 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1452 ; 2.678 ; 1.965 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 1450 ; 2.671 ; 1.961 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 2109 ; 4.155 ; 2.815 REMARK 3 LONG RANGE B REFINED ATOMS (A**2): 3842 ; 6.777 ;14.537 REMARK 3 LONG RANGE B OTHER ATOMS (A**2): 3652 ; 6.444 ;13.754 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NCS TYPE: LOCAL REMARK 3 NUMBER OF DIFFERENT NCS PAIRS : 3 REMARK 3 GROUP CHAIN1 RANGE CHAIN2 RANGE COUNT RMS WEIGHT REMARK 3 1 A 1 116 B 1 116 13552 0.09 0.05 REMARK 3 2 A 1 118 D 1 118 13540 0.11 0.05 REMARK 3 3 B 1 116 D 1 116 13458 0.11 0.05 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 3 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 1 A 118 REMARK 3 ORIGIN FOR THE GROUP (A): 14.0365 -22.4918 1.1202 REMARK 3 T TENSOR REMARK 3 T11: 0.0668 T22: 0.0504 REMARK 3 T33: 0.0524 T12: -0.0257 REMARK 3 T13: -0.0061 T23: -0.0043 REMARK 3 L TENSOR REMARK 3 L11: 0.3111 L22: 0.5678 REMARK 3 L33: 0.7217 L12: 0.3153 REMARK 3 L13: 0.1942 L23: -0.1039 REMARK 3 S TENSOR REMARK 3 S11: -0.0198 S12: -0.0115 S13: -0.0169 REMARK 3 S21: -0.0679 S22: -0.0122 S23: 0.0146 REMARK 3 S31: -0.0240 S32: 0.0472 S33: 0.0319 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 1 B 118 REMARK 3 ORIGIN FOR THE GROUP (A): -4.7174 -45.2216 4.0318 REMARK 3 T TENSOR REMARK 3 T11: 0.0604 T22: 0.0341 REMARK 3 T33: 0.0746 T12: -0.0284 REMARK 3 T13: 0.0249 T23: -0.0196 REMARK 3 L TENSOR REMARK 3 L11: 0.9755 L22: 1.1179 REMARK 3 L33: 0.0349 L12: 0.5257 REMARK 3 L13: 0.0675 L23: -0.1216 REMARK 3 S TENSOR REMARK 3 S11: -0.0022 S12: -0.1064 S13: -0.0709 REMARK 3 S21: -0.0212 S22: 0.0065 S23: -0.0152 REMARK 3 S31: 0.0043 S32: -0.0209 S33: -0.0043 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : D 1 D 118 REMARK 3 ORIGIN FOR THE GROUP (A): 36.0679 -51.8411 0.9544 REMARK 3 T TENSOR REMARK 3 T11: 0.1260 T22: 0.0600 REMARK 3 T33: 0.0039 T12: -0.0796 REMARK 3 T13: 0.0166 T23: -0.0132 REMARK 3 L TENSOR REMARK 3 L11: 1.4998 L22: 1.0805 REMARK 3 L33: 0.2832 L12: 0.7120 REMARK 3 L13: -0.6041 L23: -0.1177 REMARK 3 S TENSOR REMARK 3 S11: 0.1684 S12: -0.1567 S13: 0.0640 REMARK 3 S21: 0.1065 S22: -0.1444 S23: 0.0330 REMARK 3 S31: -0.0500 S32: 0.0414 S33: -0.0240 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 4Z45 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 01-APR-15. REMARK 100 THE DEPOSITION ID IS D_1000208554. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 25-FEB-12 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : NULL REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : DIAMOND REMARK 200 BEAMLINE : I04-1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9173 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 27953 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.020 REMARK 200 RESOLUTION RANGE LOW (A) : 59.160 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 20.00 REMARK 200 R MERGE (I) : 0.14000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 17.5000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.02 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.07 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 20.40 REMARK 200 R MERGE FOR SHELL (I) : 0.66000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 4.700 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: NULL REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 51.80 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.55 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 20% PEG 6000, 0.1 M SODIUM CITRATE PH REMARK 280 5 10MM ZNCL2, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 289K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 31 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+1/3 REMARK 290 3555 -X+Y,-X,Z+2/3 REMARK 290 4555 Y,X,-Z REMARK 290 5555 X-Y,-Y,-Z+2/3 REMARK 290 6555 -X,-X+Y,-Z+1/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 31.69333 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 63.38667 REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 63.38667 REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 31.69333 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2, 3 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 3 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 301 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 LYS A 119 REMARK 465 SER A 120 REMARK 465 THR A 121 REMARK 465 ASP B 118 REMARK 465 LYS B 119 REMARK 465 SER B 120 REMARK 465 THR B 121 REMARK 465 LYS D 119 REMARK 465 SER D 120 REMARK 465 THR D 121 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 NZ LYS D 39 O HOH D 201 2.06 REMARK 500 OG SER A 20 OD1 ASP A 22 2.16 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 GLU A 8 CG GLU A 8 CD 0.096 REMARK 500 GLU A 8 CD GLU A 8 OE2 0.087 REMARK 500 TYR A 70 CE1 TYR A 70 CZ -0.087 REMARK 500 GLU B 8 CD GLU B 8 OE2 0.091 REMARK 500 GLU B 21 CG GLU B 21 CD 0.105 REMARK 500 GLU B 64 CD GLU B 64 OE2 0.074 REMARK 500 GLU D 21 CD GLU D 21 OE1 0.077 REMARK 500 TYR D 105 CE1 TYR D 105 CZ 0.105 REMARK 500 TYR D 105 CZ TYR D 105 OH 0.102 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 4 CG - CD - NE ANGL. DEV. = -13.4 DEGREES REMARK 500 ASP A 54 CB - CG - OD1 ANGL. DEV. = 6.0 DEGREES REMARK 500 CYS A 101 CA - CB - SG ANGL. DEV. = -11.8 DEGREES REMARK 500 ARG B 4 NE - CZ - NH2 ANGL. DEV. = -3.2 DEGREES REMARK 500 GLU B 21 OE1 - CD - OE2 ANGL. DEV. = -9.0 DEGREES REMARK 500 GLY D 38 N - CA - C ANGL. DEV. = 17.1 DEGREES REMARK 500 LYS D 39 CD - CE - NZ ANGL. DEV. = 16.2 DEGREES REMARK 500 CYS D 40 CA - CB - SG ANGL. DEV. = -14.1 DEGREES REMARK 500 MET D 45 CG - SD - CE ANGL. DEV. = 10.0 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LEU A 117 5.52 -65.42 REMARK 500 SER D 34 60.14 -118.70 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 350 DISTANCE = 5.98 ANGSTROMS REMARK 525 HOH B 326 DISTANCE = 6.25 ANGSTROMS REMARK 525 HOH D 290 DISTANCE = 7.09 ANGSTROMS REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4Z39 RELATED DB: PDB REMARK 900 CLOSE HOMOLOGUE USED FOR MOLECULAR REPLACEMENT DBREF 4Z45 A 4 121 UNP C5J8G4 C5J8G4_9HEMI 1 118 DBREF 4Z45 B 4 121 UNP C5J8G4 C5J8G4_9HEMI 1 118 DBREF 4Z45 D 4 121 UNP C5J8G4 C5J8G4_9HEMI 1 118 SEQADV 4Z45 ALA A 1 UNP C5J8G4 EXPRESSION TAG SEQADV 4Z45 SER A 2 UNP C5J8G4 EXPRESSION TAG SEQADV 4Z45 MET A 3 UNP C5J8G4 EXPRESSION TAG SEQADV 4Z45 ASN A 102 UNP C5J8G4 SER 99 CONFLICT SEQADV 4Z45 TYR A 103 UNP C5J8G4 LYS 100 CONFLICT SEQADV 4Z45 TYR A 105 UNP C5J8G4 HIS 102 CONFLICT SEQADV 4Z45 THR A 106 UNP C5J8G4 ASP 103 CONFLICT SEQADV 4Z45 VAL A 107 UNP C5J8G4 ARG 104 CONFLICT SEQADV 4Z45 MET A 108 UNP C5J8G4 LYS 105 CONFLICT SEQADV 4Z45 LYS A 113 UNP C5J8G4 GLN 110 CONFLICT SEQADV 4Z45 GLN A 114 UNP C5J8G4 ASP 111 CONFLICT SEQADV 4Z45 LEU A 115 UNP C5J8G4 PRO 112 CONFLICT SEQADV 4Z45 ALA B 1 UNP C5J8G4 EXPRESSION TAG SEQADV 4Z45 SER B 2 UNP C5J8G4 EXPRESSION TAG SEQADV 4Z45 MET B 3 UNP C5J8G4 EXPRESSION TAG SEQADV 4Z45 ASN B 102 UNP C5J8G4 SER 99 CONFLICT SEQADV 4Z45 TYR B 103 UNP C5J8G4 LYS 100 CONFLICT SEQADV 4Z45 TYR B 105 UNP C5J8G4 HIS 102 CONFLICT SEQADV 4Z45 THR B 106 UNP C5J8G4 ASP 103 CONFLICT SEQADV 4Z45 VAL B 107 UNP C5J8G4 ARG 104 CONFLICT SEQADV 4Z45 MET B 108 UNP C5J8G4 LYS 105 CONFLICT SEQADV 4Z45 LYS B 113 UNP C5J8G4 GLN 110 CONFLICT SEQADV 4Z45 GLN B 114 UNP C5J8G4 ASP 111 CONFLICT SEQADV 4Z45 LEU B 115 UNP C5J8G4 PRO 112 CONFLICT SEQADV 4Z45 ALA D 1 UNP C5J8G4 EXPRESSION TAG SEQADV 4Z45 SER D 2 UNP C5J8G4 EXPRESSION TAG SEQADV 4Z45 MET D 3 UNP C5J8G4 EXPRESSION TAG SEQADV 4Z45 ASN D 102 UNP C5J8G4 SER 99 CONFLICT SEQADV 4Z45 TYR D 103 UNP C5J8G4 LYS 100 CONFLICT SEQADV 4Z45 TYR D 105 UNP C5J8G4 HIS 102 CONFLICT SEQADV 4Z45 THR D 106 UNP C5J8G4 ASP 103 CONFLICT SEQADV 4Z45 VAL D 107 UNP C5J8G4 ARG 104 CONFLICT SEQADV 4Z45 MET D 108 UNP C5J8G4 LYS 105 CONFLICT SEQADV 4Z45 LYS D 113 UNP C5J8G4 GLN 110 CONFLICT SEQADV 4Z45 GLN D 114 UNP C5J8G4 ASP 111 CONFLICT SEQADV 4Z45 LEU D 115 UNP C5J8G4 PRO 112 CONFLICT SEQRES 1 A 121 ALA SER MET ARG PHE THR THR GLU GLN ILE ASP TYR TYR SEQRES 2 A 121 GLY LYS ALA CYS ASN ALA SER GLU ASP ASP LEU VAL VAL SEQRES 3 A 121 VAL LYS SER TYR LYS VAL PRO SER THR GLU THR GLY LYS SEQRES 4 A 121 CYS LEU MET LYS CYS MET ILE THR LYS LEU GLY LEU LEU SEQRES 5 A 121 ASN ASP ASP GLY SER TYR ASN LYS THR GLY MET GLU ALA SEQRES 6 A 121 GLY LEU LYS LYS TYR TRP SER GLU TRP SER THR GLU LYS SEQRES 7 A 121 ILE GLU THR ILE ASN ASN LYS CYS TYR GLU GLU ALA LEU SEQRES 8 A 121 LEU VAL SER LYS GLU VAL VAL ALA THR CYS ASN TYR SER SEQRES 9 A 121 TYR THR VAL MET ALA CYS LEU ASN LYS GLN LEU ASP LEU SEQRES 10 A 121 ASP LYS SER THR SEQRES 1 B 121 ALA SER MET ARG PHE THR THR GLU GLN ILE ASP TYR TYR SEQRES 2 B 121 GLY LYS ALA CYS ASN ALA SER GLU ASP ASP LEU VAL VAL SEQRES 3 B 121 VAL LYS SER TYR LYS VAL PRO SER THR GLU THR GLY LYS SEQRES 4 B 121 CYS LEU MET LYS CYS MET ILE THR LYS LEU GLY LEU LEU SEQRES 5 B 121 ASN ASP ASP GLY SER TYR ASN LYS THR GLY MET GLU ALA SEQRES 6 B 121 GLY LEU LYS LYS TYR TRP SER GLU TRP SER THR GLU LYS SEQRES 7 B 121 ILE GLU THR ILE ASN ASN LYS CYS TYR GLU GLU ALA LEU SEQRES 8 B 121 LEU VAL SER LYS GLU VAL VAL ALA THR CYS ASN TYR SER SEQRES 9 B 121 TYR THR VAL MET ALA CYS LEU ASN LYS GLN LEU ASP LEU SEQRES 10 B 121 ASP LYS SER THR SEQRES 1 D 121 ALA SER MET ARG PHE THR THR GLU GLN ILE ASP TYR TYR SEQRES 2 D 121 GLY LYS ALA CYS ASN ALA SER GLU ASP ASP LEU VAL VAL SEQRES 3 D 121 VAL LYS SER TYR LYS VAL PRO SER THR GLU THR GLY LYS SEQRES 4 D 121 CYS LEU MET LYS CYS MET ILE THR LYS LEU GLY LEU LEU SEQRES 5 D 121 ASN ASP ASP GLY SER TYR ASN LYS THR GLY MET GLU ALA SEQRES 6 D 121 GLY LEU LYS LYS TYR TRP SER GLU TRP SER THR GLU LYS SEQRES 7 D 121 ILE GLU THR ILE ASN ASN LYS CYS TYR GLU GLU ALA LEU SEQRES 8 D 121 LEU VAL SER LYS GLU VAL VAL ALA THR CYS ASN TYR SER SEQRES 9 D 121 TYR THR VAL MET ALA CYS LEU ASN LYS GLN LEU ASP LEU SEQRES 10 D 121 ASP LYS SER THR FORMUL 4 HOH *366(H2 O) HELIX 1 AA1 THR A 6 CYS A 17 1 12 HELIX 2 AA2 SER A 20 SER A 29 1 10 HELIX 3 AA3 THR A 37 LYS A 39 5 3 HELIX 4 AA4 CYS A 40 LEU A 49 1 10 HELIX 5 AA5 ASN A 59 TRP A 71 1 13 HELIX 6 AA6 SER A 75 LEU A 91 1 17 HELIX 7 AA7 SER A 94 ALA A 99 1 6 HELIX 8 AA8 CYS A 101 LEU A 117 1 17 HELIX 9 AA9 THR B 6 CYS B 17 1 12 HELIX 10 AB1 SER B 20 SER B 29 1 10 HELIX 11 AB2 THR B 35 CYS B 40 1 6 HELIX 12 AB3 CYS B 40 LEU B 49 1 10 HELIX 13 AB4 ASN B 59 TRP B 71 1 13 HELIX 14 AB5 SER B 75 LEU B 91 1 17 HELIX 15 AB6 SER B 94 ALA B 99 1 6 HELIX 16 AB7 CYS B 101 LEU B 117 1 17 HELIX 17 AB8 THR D 6 CYS D 17 1 12 HELIX 18 AB9 SER D 20 SER D 29 1 10 HELIX 19 AC1 CYS D 40 LEU D 49 1 10 HELIX 20 AC2 ASN D 59 TRP D 71 1 13 HELIX 21 AC3 SER D 75 LEU D 91 1 17 HELIX 22 AC4 SER D 94 ALA D 99 1 6 HELIX 23 AC5 ASN D 102 LEU D 117 1 16 SSBOND 1 CYS A 17 CYS A 44 1555 1555 2.18 SSBOND 2 CYS A 40 CYS A 101 1555 1555 2.01 SSBOND 3 CYS A 86 CYS A 110 1555 1555 2.06 SSBOND 4 CYS B 17 CYS B 44 1555 1555 2.24 SSBOND 5 CYS B 40 CYS B 101 1555 1555 2.09 SSBOND 6 CYS B 86 CYS B 110 1555 1555 2.14 SSBOND 7 CYS D 17 CYS D 44 1555 1555 2.17 SSBOND 8 CYS D 40 CYS D 101 1555 1555 2.03 SSBOND 9 CYS D 86 CYS D 110 1555 1555 2.17 CRYST1 87.250 87.250 95.080 90.00 90.00 120.00 P 31 2 1 18 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.011461 0.006617 0.000000 0.00000 SCALE2 0.000000 0.013234 0.000000 0.00000 SCALE3 0.000000 0.000000 0.010517 0.00000