HEADER VIRAL PROTEIN 02-APR-15 4Z4T TITLE CRYSTAL STRUCTURE OF GII.10 P DOMAIN IN COMPLEX WITH 75MM FUCOSE COMPND MOL_ID: 1; COMPND 2 MOLECULE: CAPSID PROTEIN; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: UNP RESIDUES 224-538; COMPND 5 SYNONYM: GII.10 NOROVIRUS CAPSID PROTRUDING DOMAIN; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: NORWALK VIRUS; SOURCE 3 ORGANISM_TAXID: 11983; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 5 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 6 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 7 EXPRESSION_SYSTEM_PLASMID: PMBP KEYWDS FUCOSE, NOROVIRUS, PROTRUDING DOMAIN, VIRAL PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR A.D.KOROMYSLOVA,M.M.LEUTHOLD,G.S.HANSMAN REVDAT 4 10-JAN-24 4Z4T 1 HETSYN REVDAT 3 29-JUL-20 4Z4T 1 COMPND REMARK HETNAM SITE REVDAT 2 03-JUN-15 4Z4T 1 JRNL REVDAT 1 27-MAY-15 4Z4T 0 JRNL AUTH A.D.KOROMYSLOVA,M.M.LEUTHOLD,M.W.BOWLER,G.S.HANSMAN JRNL TITL THE SWEET QUARTET: BINDING OF FUCOSE TO THE NOROVIRUS JRNL TITL 2 CAPSID. JRNL REF VIROLOGY V. 483 203 2015 JRNL REFN ISSN 0042-6822 JRNL PMID 25980740 JRNL DOI 10.1016/J.VIROL.2015.04.006 REMARK 2 REMARK 2 RESOLUTION. 1.80 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.80 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 43.42 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.370 REMARK 3 COMPLETENESS FOR RANGE (%) : 98.8 REMARK 3 NUMBER OF REFLECTIONS : 63483 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.149 REMARK 3 R VALUE (WORKING SET) : 0.148 REMARK 3 FREE R VALUE : 0.174 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 3176 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 43.4314 - 5.1117 0.97 2655 141 0.1469 0.1405 REMARK 3 2 5.1117 - 4.0583 0.98 2639 139 0.1172 0.1332 REMARK 3 3 4.0583 - 3.5456 0.99 2660 140 0.1378 0.1528 REMARK 3 4 3.5456 - 3.2215 1.00 2651 139 0.1456 0.1880 REMARK 3 5 3.2215 - 2.9907 1.00 2619 138 0.1494 0.1639 REMARK 3 6 2.9907 - 2.8144 1.00 2682 142 0.1568 0.1632 REMARK 3 7 2.8144 - 2.6734 1.00 2651 139 0.1563 0.1921 REMARK 3 8 2.6734 - 2.5571 0.99 2604 137 0.1535 0.2045 REMARK 3 9 2.5571 - 2.4587 0.98 2628 138 0.1479 0.1834 REMARK 3 10 2.4587 - 2.3738 0.99 2619 138 0.1493 0.1762 REMARK 3 11 2.3738 - 2.2996 0.99 2609 138 0.1498 0.1821 REMARK 3 12 2.2996 - 2.2339 0.98 2583 136 0.1508 0.1735 REMARK 3 13 2.2339 - 2.1751 0.99 2627 138 0.1542 0.2001 REMARK 3 14 2.1751 - 2.1220 0.99 2622 138 0.1534 0.2001 REMARK 3 15 2.1220 - 2.0738 0.99 2641 139 0.1532 0.1840 REMARK 3 16 2.0738 - 2.0296 1.00 2619 138 0.1569 0.2062 REMARK 3 17 2.0296 - 1.9890 0.99 2649 139 0.1469 0.1818 REMARK 3 18 1.9890 - 1.9515 1.00 2653 140 0.1506 0.1649 REMARK 3 19 1.9515 - 1.9166 1.00 2605 137 0.1525 0.2183 REMARK 3 20 1.9166 - 1.8842 1.00 2661 140 0.1660 0.2089 REMARK 3 21 1.8842 - 1.8538 1.00 2609 138 0.1646 0.1933 REMARK 3 22 1.8538 - 1.8252 0.99 2589 136 0.1668 0.1989 REMARK 3 23 1.8252 - 1.7984 0.92 2432 128 0.1853 0.2186 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.150 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 16.420 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 21.45 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.008 4971 REMARK 3 ANGLE : 1.141 6812 REMARK 3 CHIRALITY : 0.051 778 REMARK 3 PLANARITY : 0.006 893 REMARK 3 DIHEDRAL : 11.473 1740 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 7 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 225 THROUGH 327 ) REMARK 3 ORIGIN FOR THE GROUP (A): 9.2026 8.8328 10.7617 REMARK 3 T TENSOR REMARK 3 T11: 0.0991 T22: 0.0862 REMARK 3 T33: 0.0806 T12: -0.0197 REMARK 3 T13: -0.0124 T23: 0.0092 REMARK 3 L TENSOR REMARK 3 L11: 0.7095 L22: 1.4247 REMARK 3 L33: 1.8700 L12: -0.1798 REMARK 3 L13: -0.1807 L23: 0.3900 REMARK 3 S TENSOR REMARK 3 S11: -0.0082 S12: 0.0510 S13: 0.0488 REMARK 3 S21: -0.1044 S22: 0.0160 S23: -0.0097 REMARK 3 S31: -0.1474 S32: 0.0487 S33: -0.0069 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 328 THROUGH 390 ) REMARK 3 ORIGIN FOR THE GROUP (A): 2.7341 11.7401 25.9740 REMARK 3 T TENSOR REMARK 3 T11: 0.1108 T22: 0.0723 REMARK 3 T33: 0.0804 T12: 0.0132 REMARK 3 T13: 0.0010 T23: -0.0092 REMARK 3 L TENSOR REMARK 3 L11: 1.2682 L22: 1.5680 REMARK 3 L33: 2.2018 L12: 0.0671 REMARK 3 L13: 0.0354 L23: -0.4083 REMARK 3 S TENSOR REMARK 3 S11: -0.0150 S12: -0.1190 S13: 0.1015 REMARK 3 S21: 0.1957 S22: 0.0679 S23: -0.0135 REMARK 3 S31: -0.2991 S32: -0.0532 S33: -0.0141 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 391 THROUGH 455 ) REMARK 3 ORIGIN FOR THE GROUP (A): 0.8994 6.4322 6.5846 REMARK 3 T TENSOR REMARK 3 T11: 0.1253 T22: 0.1372 REMARK 3 T33: 0.0932 T12: -0.0115 REMARK 3 T13: -0.0290 T23: 0.0118 REMARK 3 L TENSOR REMARK 3 L11: 0.5919 L22: 1.1141 REMARK 3 L33: 1.1182 L12: 0.0566 REMARK 3 L13: -0.2492 L23: -0.2378 REMARK 3 S TENSOR REMARK 3 S11: -0.0469 S12: 0.1750 S13: 0.0711 REMARK 3 S21: -0.2153 S22: 0.0976 S23: 0.1411 REMARK 3 S31: -0.0641 S32: -0.1574 S33: -0.0390 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 456 THROUGH 538 ) REMARK 3 ORIGIN FOR THE GROUP (A): 15.7973 -2.5884 -6.1445 REMARK 3 T TENSOR REMARK 3 T11: 0.2522 T22: 0.1821 REMARK 3 T33: 0.1158 T12: -0.0266 REMARK 3 T13: 0.0494 T23: -0.0237 REMARK 3 L TENSOR REMARK 3 L11: 2.0782 L22: 0.6548 REMARK 3 L33: 2.3835 L12: 0.2180 REMARK 3 L13: -0.2703 L23: -0.0943 REMARK 3 S TENSOR REMARK 3 S11: -0.0837 S12: 0.2375 S13: -0.1584 REMARK 3 S21: -0.3475 S22: 0.0887 S23: -0.1229 REMARK 3 S31: 0.1084 S32: 0.2639 S33: -0.0004 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 225 THROUGH 295 ) REMARK 3 ORIGIN FOR THE GROUP (A): 22.3601 -6.0223 22.0509 REMARK 3 T TENSOR REMARK 3 T11: 0.0758 T22: 0.0907 REMARK 3 T33: 0.1110 T12: 0.0082 REMARK 3 T13: -0.0127 T23: -0.0012 REMARK 3 L TENSOR REMARK 3 L11: 1.8334 L22: 1.3776 REMARK 3 L33: 0.6868 L12: 0.4916 REMARK 3 L13: -0.1353 L23: -0.0517 REMARK 3 S TENSOR REMARK 3 S11: 0.0057 S12: 0.0693 S13: -0.0644 REMARK 3 S21: 0.0131 S22: 0.0133 S23: -0.2398 REMARK 3 S31: 0.0440 S32: 0.0998 S33: -0.0153 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 296 THROUGH 455 ) REMARK 3 ORIGIN FOR THE GROUP (A): 10.9182 -11.0770 28.4164 REMARK 3 T TENSOR REMARK 3 T11: 0.1127 T22: 0.0907 REMARK 3 T33: 0.1000 T12: -0.0129 REMARK 3 T13: -0.0136 T23: 0.0171 REMARK 3 L TENSOR REMARK 3 L11: 1.3782 L22: 1.2715 REMARK 3 L33: 0.7781 L12: -0.1618 REMARK 3 L13: 0.3058 L23: -0.0876 REMARK 3 S TENSOR REMARK 3 S11: 0.0263 S12: -0.1061 S13: -0.2106 REMARK 3 S21: 0.0905 S22: 0.0262 S23: -0.0156 REMARK 3 S31: 0.1240 S32: -0.0403 S33: -0.0406 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 456 THROUGH 538 ) REMARK 3 ORIGIN FOR THE GROUP (A): 36.6426 0.9168 19.6713 REMARK 3 T TENSOR REMARK 3 T11: 0.1158 T22: 0.1641 REMARK 3 T33: 0.2668 T12: -0.0172 REMARK 3 T13: 0.0384 T23: -0.0171 REMARK 3 L TENSOR REMARK 3 L11: 2.3602 L22: 0.9350 REMARK 3 L33: 2.1997 L12: -0.0994 REMARK 3 L13: 0.2167 L23: 0.3470 REMARK 3 S TENSOR REMARK 3 S11: 0.0377 S12: 0.1775 S13: 0.0066 REMARK 3 S21: -0.1095 S22: 0.0352 S23: -0.4392 REMARK 3 S31: -0.1165 S32: 0.2710 S33: -0.0426 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : 1 REMARK 3 NCS GROUP : 1 REMARK 3 NCS OPERATOR : 1 REMARK 3 REFERENCE SELECTION: CHAIN A REMARK 3 SELECTION : CHAIN B REMARK 3 ATOM PAIRS NUMBER : 2766 REMARK 3 RMSD : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4Z4T COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 03-APR-15. REMARK 100 THE DEPOSITION ID IS D_1000208462. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 20-FEB-15 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : MASSIF-1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.984463 REMARK 200 MONOCHROMATOR : SI(111) REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS3 2M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : NULL REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 63508 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.798 REMARK 200 RESOLUTION RANGE LOW (A) : 43.420 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.8 REMARK 200 DATA REDUNDANCY : 3.100 REMARK 200 R MERGE (I) : 0.04431 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 18.2500 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.80 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.86 REMARK 200 COMPLETENESS FOR SHELL (%) : 96.1 REMARK 200 DATA REDUNDANCY IN SHELL : 2.80 REMARK 200 R MERGE FOR SHELL (I) : 0.18710 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 5.970 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER 2.5.6 REMARK 200 STARTING MODEL: 3ONU REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 51.64 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.54 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: SODIUM NITRATE, BIS-TRIS PROPANE, REMARK 280 PEG3350, PH 7.5, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 291K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 39.42500 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 6540 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 23970 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: 17.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 SER A 224 REMARK 465 PRO A 347 REMARK 465 GLY A 348 REMARK 465 GLU A 349 REMARK 465 VAL B 346 REMARK 465 PRO B 347 REMARK 465 GLY B 348 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLU A 297 CG CD OE1 OE2 REMARK 470 GLU A 319 CG CD OE1 OE2 REMARK 470 VAL A 346 CG1 CG2 REMARK 470 GLN A 384 CG CD OE1 NE2 REMARK 470 GLU A 489 CG CD OE1 OE2 REMARK 470 THR A 490 OG1 CG2 REMARK 470 ARG A 492 CG CD NE CZ NH1 NH2 REMARK 470 GLN B 295 CG CD OE1 NE2 REMARK 470 HIS B 298 CG ND1 CD2 CE1 NE2 REMARK 470 ARG B 299 CG CD NE CZ NH1 NH2 REMARK 470 GLU B 319 CG CD OE1 OE2 REMARK 470 ASN B 344 CG OD1 ND2 REMARK 470 THR B 345 OG1 CG2 REMARK 470 GLU B 349 CG CD OE1 OE2 REMARK 470 ASN B 351 CG OD1 ND2 REMARK 470 PHE B 434 CG CD1 CD2 CE1 CE2 CZ REMARK 470 GLU B 489 CG CD OE1 OE2 REMARK 470 ARG B 492 CG CD NE CZ NH1 NH2 REMARK 470 ARG B 524 NE CZ NH1 NH2 REMARK 470 GLN B 531 CG CD OE1 NE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 969 O HOH A 1003 1.99 REMARK 500 O HOH A 796 O HOH A 969 2.05 REMARK 500 O HOH B 791 O HOH B 1034 2.08 REMARK 500 O HOH A 1039 O HOH A 1052 2.13 REMARK 500 O HOH A 945 O HOH A 1039 2.17 REMARK 500 O HOH A 1019 O HOH B 1018 2.17 REMARK 500 O HOH B 722 O HOH B 964 2.18 REMARK 500 O HOH A 736 O HOH A 1005 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ILE A 231 77.26 -100.78 REMARK 500 ASN A 252 76.92 -153.43 REMARK 500 GLN A 260 49.81 -151.26 REMARK 500 GLN A 384 -32.27 -138.76 REMARK 500 VAL A 529 -158.52 -119.46 REMARK 500 ASN B 252 77.16 -153.08 REMARK 500 GLN B 260 49.28 -151.07 REMARK 500 HIS B 298 -74.15 -96.68 REMARK 500 GLN B 384 -33.37 -140.78 REMARK 500 VAL B 529 -169.82 -122.49 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A1053 DISTANCE = 6.17 ANGSTROMS REMARK 525 HOH B1042 DISTANCE = 6.37 ANGSTROMS REMARK 525 HOH B1043 DISTANCE = 6.66 ANGSTROMS DBREF 4Z4T A 224 538 UNP Q5F4T5 Q5F4T5_9CALI 224 538 DBREF 4Z4T B 224 538 UNP Q5F4T5 Q5F4T5_9CALI 224 538 SEQRES 1 A 315 SER LYS PRO PHE THR LEU PRO ILE LEU THR LEU GLY GLU SEQRES 2 A 315 LEU THR ASN SER ARG PHE PRO LEU PRO ILE ASP VAL LEU SEQRES 3 A 315 TYR THR ASN PRO ASN GLU SER ALA ILE VAL GLN CYS GLN SEQRES 4 A 315 ASN GLY ARG CYS THR LEU ASP GLY GLU LEU GLN GLY THR SEQRES 5 A 315 THR GLN LEU LEU PRO THR GLY ILE CYS ALA PHE ARG GLY SEQRES 6 A 315 LYS VAL THR GLN GLN VAL GLN ASP GLU HIS ARG GLY THR SEQRES 7 A 315 HIS TRP ASN MET THR VAL THR ASN LEU ASN GLY THR PRO SEQRES 8 A 315 PHE ASP PRO THR GLU ASP VAL PRO ALA PRO LEU GLY THR SEQRES 9 A 315 PRO ASP PHE SER GLY GLN ILE TYR GLY VAL ILE SER GLN SEQRES 10 A 315 ARG ASN THR ASN THR VAL PRO GLY GLU GLY ASN LEU PRO SEQRES 11 A 315 ALA ASN ARG ALA HIS GLU ALA VAL ILE ALA THR TYR SER SEQRES 12 A 315 PRO LYS PHE THR PRO LYS LEU GLY ASN ILE GLN PHE SER SEQRES 13 A 315 THR TRP GLU THR GLN ASP VAL SER SER GLY GLN PRO THR SEQRES 14 A 315 LYS PHE THR PRO VAL GLY LEU ALA SER VAL ASP ALA ASN SEQRES 15 A 315 SER HIS PHE ASP GLN TRP THR LEU PRO SER TYR SER GLY SEQRES 16 A 315 ALA LEU THR LEU ASN MET ASN LEU ALA PRO SER VAL ALA SEQRES 17 A 315 PRO VAL PHE PRO GLY GLU CYS LEU LEU PHE PHE ARG SER SEQRES 18 A 315 PHE ILE PRO LEU LYS GLY GLY TYR GLY ASN PRO ALA ILE SEQRES 19 A 315 ASP CYS LEU MET PRO GLN GLU TRP VAL GLN HIS LEU TYR SEQRES 20 A 315 GLN GLU SER ALA PRO SER LEU SER ASP VAL ALA LEU VAL SEQRES 21 A 315 ARG TYR VAL ASN PRO GLU THR GLY ARG THR LEU PHE GLU SEQRES 22 A 315 ALA LYS LEU HIS ARG ASN GLY PHE LEU THR VAL ALA ARG SEQRES 23 A 315 ASN SER ALA GLY PRO VAL VAL ALA PRO THR ASN GLY TYR SEQRES 24 A 315 PHE ARG PHE ASP SER TRP VAL ASN GLN PHE TYR THR LEU SEQRES 25 A 315 ALA PRO MET SEQRES 1 B 315 SER LYS PRO PHE THR LEU PRO ILE LEU THR LEU GLY GLU SEQRES 2 B 315 LEU THR ASN SER ARG PHE PRO LEU PRO ILE ASP VAL LEU SEQRES 3 B 315 TYR THR ASN PRO ASN GLU SER ALA ILE VAL GLN CYS GLN SEQRES 4 B 315 ASN GLY ARG CYS THR LEU ASP GLY GLU LEU GLN GLY THR SEQRES 5 B 315 THR GLN LEU LEU PRO THR GLY ILE CYS ALA PHE ARG GLY SEQRES 6 B 315 LYS VAL THR GLN GLN VAL GLN ASP GLU HIS ARG GLY THR SEQRES 7 B 315 HIS TRP ASN MET THR VAL THR ASN LEU ASN GLY THR PRO SEQRES 8 B 315 PHE ASP PRO THR GLU ASP VAL PRO ALA PRO LEU GLY THR SEQRES 9 B 315 PRO ASP PHE SER GLY GLN ILE TYR GLY VAL ILE SER GLN SEQRES 10 B 315 ARG ASN THR ASN THR VAL PRO GLY GLU GLY ASN LEU PRO SEQRES 11 B 315 ALA ASN ARG ALA HIS GLU ALA VAL ILE ALA THR TYR SER SEQRES 12 B 315 PRO LYS PHE THR PRO LYS LEU GLY ASN ILE GLN PHE SER SEQRES 13 B 315 THR TRP GLU THR GLN ASP VAL SER SER GLY GLN PRO THR SEQRES 14 B 315 LYS PHE THR PRO VAL GLY LEU ALA SER VAL ASP ALA ASN SEQRES 15 B 315 SER HIS PHE ASP GLN TRP THR LEU PRO SER TYR SER GLY SEQRES 16 B 315 ALA LEU THR LEU ASN MET ASN LEU ALA PRO SER VAL ALA SEQRES 17 B 315 PRO VAL PHE PRO GLY GLU CYS LEU LEU PHE PHE ARG SER SEQRES 18 B 315 PHE ILE PRO LEU LYS GLY GLY TYR GLY ASN PRO ALA ILE SEQRES 19 B 315 ASP CYS LEU MET PRO GLN GLU TRP VAL GLN HIS LEU TYR SEQRES 20 B 315 GLN GLU SER ALA PRO SER LEU SER ASP VAL ALA LEU VAL SEQRES 21 B 315 ARG TYR VAL ASN PRO GLU THR GLY ARG THR LEU PHE GLU SEQRES 22 B 315 ALA LYS LEU HIS ARG ASN GLY PHE LEU THR VAL ALA ARG SEQRES 23 B 315 ASN SER ALA GLY PRO VAL VAL ALA PRO THR ASN GLY TYR SEQRES 24 B 315 PHE ARG PHE ASP SER TRP VAL ASN GLN PHE TYR THR LEU SEQRES 25 B 315 ALA PRO MET HET EDO A 601 4 HET EDO A 602 4 HET FUL A 603 11 HET FUL A 604 11 HET NO3 A 605 4 HET EDO B 601 4 HET EDO B 602 4 HET EDO B 603 4 HET EDO B 604 4 HET FUL B 605 11 HET FUL B 606 11 HETNAM EDO 1,2-ETHANEDIOL HETNAM FUL BETA-L-FUCOPYRANOSE HETNAM NO3 NITRATE ION HETSYN EDO ETHYLENE GLYCOL HETSYN FUL BETA-L-FUCOSE; 6-DEOXY-BETA-L-GALACTOPYRANOSE; L- HETSYN 2 FUL FUCOSE; FUCOSE; 6-DEOXY-BETA-L-GALACTOSE FORMUL 3 EDO 6(C2 H6 O2) FORMUL 5 FUL 4(C6 H12 O5) FORMUL 7 NO3 N O3 1- FORMUL 14 HOH *696(H2 O) HELIX 1 AA1 THR A 233 LEU A 237 5 5 HELIX 2 AA2 LEU A 279 ILE A 283 5 5 HELIX 3 AA3 THR A 370 LEU A 373 5 4 HELIX 4 AA4 ASP A 403 HIS A 407 5 5 HELIX 5 AA5 PRO A 462 SER A 473 1 12 HELIX 6 AA6 THR B 233 LEU B 237 5 5 HELIX 7 AA7 LEU B 279 ILE B 283 5 5 HELIX 8 AA8 THR B 370 LEU B 373 5 4 HELIX 9 AA9 ASP B 403 HIS B 407 5 5 HELIX 10 AB1 PRO B 462 SER B 473 1 12 SHEET 1 AA1 4 ALA A 456 CYS A 459 0 SHEET 2 AA1 4 GLU A 437 PHE A 445 -1 N SER A 444 O ILE A 457 SHEET 3 AA1 4 VAL A 248 THR A 251 -1 N TYR A 250 O PHE A 441 SHEET 4 AA1 4 GLY A 513 VAL A 515 -1 O GLY A 513 N THR A 251 SHEET 1 AA2 6 ALA A 456 CYS A 459 0 SHEET 2 AA2 6 GLU A 437 PHE A 445 -1 N SER A 444 O ILE A 457 SHEET 3 AA2 6 PHE A 504 ALA A 508 -1 O VAL A 507 N CYS A 438 SHEET 4 AA2 6 THR A 493 HIS A 500 -1 N HIS A 500 O PHE A 504 SHEET 5 AA2 6 VAL A 480 VAL A 486 -1 N TYR A 485 O LEU A 494 SHEET 6 AA2 6 TYR A 522 VAL A 529 -1 O SER A 527 N LEU A 482 SHEET 1 AA3 8 GLY B 450 TYR B 452 0 SHEET 2 AA3 8 ALA A 354 ALA A 363 -1 N ASN A 355 O GLY B 451 SHEET 3 AA3 8 ASN A 375 THR A 380 -1 O SER A 379 N VAL A 361 SHEET 4 AA3 8 THR A 301 VAL A 307 -1 N MET A 305 O ILE A 376 SHEET 5 AA3 8 PHE A 286 VAL A 294 -1 N THR A 291 O ASN A 304 SHEET 6 AA3 8 PRO A 391 LEU A 399 -1 O THR A 392 N GLY A 288 SHEET 7 AA3 8 GLN A 333 ARG A 341 -1 N TYR A 335 O VAL A 397 SHEET 8 AA3 8 ALA A 354 ALA A 363 -1 O ILE A 362 N ILE A 334 SHEET 1 AA4 8 GLY A 450 TYR A 452 0 SHEET 2 AA4 8 ALA B 354 ALA B 363 -1 O ASN B 355 N GLY A 451 SHEET 3 AA4 8 ASN B 375 THR B 380 -1 O SER B 379 N VAL B 361 SHEET 4 AA4 8 THR B 301 THR B 308 -1 N MET B 305 O ILE B 376 SHEET 5 AA4 8 PHE B 286 GLN B 295 -1 N VAL B 294 O HIS B 302 SHEET 6 AA4 8 PRO B 391 LEU B 399 -1 O THR B 392 N GLY B 288 SHEET 7 AA4 8 GLN B 333 ARG B 341 -1 N VAL B 337 O THR B 395 SHEET 8 AA4 8 ALA B 354 ALA B 363 -1 O ILE B 362 N ILE B 334 SHEET 1 AA5 4 ALA B 456 CYS B 459 0 SHEET 2 AA5 4 GLU B 437 PHE B 445 -1 N SER B 444 O ILE B 457 SHEET 3 AA5 4 VAL B 248 THR B 251 -1 N TYR B 250 O PHE B 441 SHEET 4 AA5 4 GLY B 513 PRO B 514 -1 O GLY B 513 N THR B 251 SHEET 1 AA6 6 ALA B 456 CYS B 459 0 SHEET 2 AA6 6 GLU B 437 PHE B 445 -1 N SER B 444 O ILE B 457 SHEET 3 AA6 6 PHE B 504 ALA B 508 -1 O VAL B 507 N CYS B 438 SHEET 4 AA6 6 THR B 493 HIS B 500 -1 N HIS B 500 O PHE B 504 SHEET 5 AA6 6 VAL B 480 VAL B 486 -1 N TYR B 485 O LEU B 494 SHEET 6 AA6 6 TYR B 522 VAL B 529 -1 O TYR B 522 N VAL B 486 CRYST1 65.749 78.850 68.642 90.00 99.43 90.00 P 1 21 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.015209 0.000000 0.002527 0.00000 SCALE2 0.000000 0.012682 0.000000 0.00000 SCALE3 0.000000 0.000000 0.014768 0.00000