HEADER VIRAL PROTEIN 02-APR-15 4Z4W TITLE CRYSTAL STRUCTURE OF GII.10 P DOMAIN IN COMPLEX WITH 4.7MM FUCOSE COMPND MOL_ID: 1; COMPND 2 MOLECULE: CAPSID PROTEIN; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: PROTRUDING DOMAIN, UNP RESIDUES 224-538; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: NOROVIRUS GII.10; SOURCE 3 ORGANISM_TAXID: 747305; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 511693; SOURCE 6 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 7 EXPRESSION_SYSTEM_PLASMID: PMBP KEYWDS FUCOSE, NOROVIRUS, PROTRUDING DOMAIN, VIRAL PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR A.D.KOROMYSLOVA,M.M.LEUTHOLD,G.S.HANSMAN REVDAT 4 10-JAN-24 4Z4W 1 HETSYN REVDAT 3 29-JUL-20 4Z4W 1 COMPND REMARK HETNAM SITE REVDAT 2 03-JUN-15 4Z4W 1 JRNL REVDAT 1 27-MAY-15 4Z4W 0 JRNL AUTH A.D.KOROMYSLOVA,M.M.LEUTHOLD,M.W.BOWLER,G.S.HANSMAN JRNL TITL THE SWEET QUARTET: BINDING OF FUCOSE TO THE NOROVIRUS JRNL TITL 2 CAPSID. JRNL REF VIROLOGY V. 483 203 2015 JRNL REFN ISSN 0042-6822 JRNL PMID 25980740 JRNL DOI 10.1016/J.VIROL.2015.04.006 REMARK 2 REMARK 2 RESOLUTION. 1.80 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.80 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 43.40 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 0.730 REMARK 3 COMPLETENESS FOR RANGE (%) : 94.2 REMARK 3 NUMBER OF REFLECTIONS : 63970 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.156 REMARK 3 R VALUE (WORKING SET) : 0.155 REMARK 3 FREE R VALUE : 0.191 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.020 REMARK 3 FREE R VALUE TEST SET COUNT : 6023 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 43.4234 - 5.5842 0.97 3928 210 0.1478 0.1769 REMARK 3 2 5.5842 - 4.4337 0.94 3812 202 0.1188 0.1625 REMARK 3 3 4.4337 - 3.8737 0.93 3757 206 0.1249 0.1436 REMARK 3 4 3.8737 - 3.5197 0.93 3771 197 0.1391 0.1729 REMARK 3 5 3.5197 - 3.2675 0.94 3795 201 0.1463 0.1712 REMARK 3 6 3.2675 - 3.0749 0.96 3880 205 0.1473 0.1877 REMARK 3 7 3.0749 - 2.9210 0.96 3862 205 0.1552 0.2021 REMARK 3 8 2.9210 - 2.7938 0.96 3884 205 0.1445 0.1922 REMARK 3 9 2.7938 - 2.6863 0.97 3934 207 0.1453 0.1614 REMARK 3 10 2.6863 - 2.5936 0.96 3860 203 0.1481 0.2112 REMARK 3 11 2.5936 - 2.5125 0.92 3725 200 0.1454 0.1719 REMARK 3 12 2.5125 - 2.4407 0.94 3830 207 0.1505 0.2051 REMARK 3 13 2.4407 - 2.3765 0.92 3713 197 0.1526 0.2149 REMARK 3 14 2.3765 - 2.3185 0.94 3755 194 0.1480 0.2062 REMARK 3 15 2.3185 - 2.2658 0.95 3854 206 0.1540 0.1735 REMARK 3 16 2.2658 - 2.2176 0.93 3754 199 0.1704 0.2135 REMARK 3 17 2.2176 - 2.1732 0.96 3856 206 0.1577 0.1879 REMARK 3 18 2.1732 - 2.1322 0.96 3923 204 0.1533 0.2151 REMARK 3 19 2.1322 - 2.0941 0.96 3810 207 0.1526 0.1859 REMARK 3 20 2.0941 - 2.0586 0.96 3900 207 0.1532 0.1732 REMARK 3 21 2.0586 - 2.0254 0.96 3858 205 0.1517 0.1942 REMARK 3 22 2.0254 - 1.9942 0.96 3838 200 0.1545 0.1815 REMARK 3 23 1.9942 - 1.9649 0.96 3932 205 0.1593 0.1807 REMARK 3 24 1.9649 - 1.9372 0.95 3816 205 0.1734 0.2175 REMARK 3 25 1.9372 - 1.9111 0.94 3832 193 0.1910 0.2173 REMARK 3 26 1.9111 - 1.8862 0.94 3714 191 0.2184 0.2939 REMARK 3 27 1.8862 - 1.8627 0.94 3798 193 0.2213 0.2569 REMARK 3 28 1.8627 - 1.8402 0.93 3793 202 0.2325 0.2938 REMARK 3 29 1.8402 - 1.8188 0.92 3724 196 0.2662 0.2786 REMARK 3 30 1.8188 - 1.7984 0.77 3117 165 0.2905 0.2768 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.190 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 18.530 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 17.92 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.008 4971 REMARK 3 ANGLE : 1.148 6821 REMARK 3 CHIRALITY : 0.053 768 REMARK 3 PLANARITY : 0.006 902 REMARK 3 DIHEDRAL : 11.251 1764 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 6 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 225 THROUGH 332 ) REMARK 3 ORIGIN FOR THE GROUP (A): 73.6955 8.9861 11.0081 REMARK 3 T TENSOR REMARK 3 T11: 0.0750 T22: 0.0503 REMARK 3 T33: 0.0574 T12: -0.0123 REMARK 3 T13: -0.0104 T23: 0.0129 REMARK 3 L TENSOR REMARK 3 L11: 0.7852 L22: 0.8288 REMARK 3 L33: 1.3644 L12: -0.1251 REMARK 3 L13: -0.0097 L23: 0.1298 REMARK 3 S TENSOR REMARK 3 S11: -0.0300 S12: 0.0504 S13: 0.0827 REMARK 3 S21: -0.0361 S22: -0.0026 S23: 0.0043 REMARK 3 S31: -0.1118 S32: 0.0695 S33: 0.0143 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 333 THROUGH 455 ) REMARK 3 ORIGIN FOR THE GROUP (A): 66.6552 9.1445 17.0969 REMARK 3 T TENSOR REMARK 3 T11: 0.0731 T22: 0.0422 REMARK 3 T33: 0.0684 T12: 0.0064 REMARK 3 T13: -0.0059 T23: 0.0075 REMARK 3 L TENSOR REMARK 3 L11: 0.8637 L22: 0.7912 REMARK 3 L33: 0.8211 L12: -0.0268 REMARK 3 L13: -0.1922 L23: -0.1349 REMARK 3 S TENSOR REMARK 3 S11: -0.0230 S12: 0.0203 S13: 0.0969 REMARK 3 S21: 0.0109 S22: 0.0397 S23: 0.0385 REMARK 3 S31: -0.1537 S32: -0.0738 S33: -0.0045 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 456 THROUGH 538 ) REMARK 3 ORIGIN FOR THE GROUP (A): 81.0358 -2.5760 -5.9810 REMARK 3 T TENSOR REMARK 3 T11: 0.1605 T22: 0.1842 REMARK 3 T33: 0.0861 T12: -0.0197 REMARK 3 T13: 0.0339 T23: -0.0019 REMARK 3 L TENSOR REMARK 3 L11: 1.1820 L22: 0.4652 REMARK 3 L33: 1.1588 L12: 0.2226 REMARK 3 L13: -0.2280 L23: -0.1049 REMARK 3 S TENSOR REMARK 3 S11: -0.0764 S12: 0.1978 S13: -0.1253 REMARK 3 S21: -0.1947 S22: 0.0503 S23: -0.0853 REMARK 3 S31: 0.1127 S32: 0.1879 S33: 0.0365 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 224 THROUGH 327 ) REMARK 3 ORIGIN FOR THE GROUP (A): 82.6483 -9.7116 23.0678 REMARK 3 T TENSOR REMARK 3 T11: 0.0731 T22: 0.0415 REMARK 3 T33: 0.0702 T12: 0.0072 REMARK 3 T13: -0.0134 T23: 0.0032 REMARK 3 L TENSOR REMARK 3 L11: 1.4476 L22: 1.0857 REMARK 3 L33: 0.8420 L12: 0.2853 REMARK 3 L13: 0.0334 L23: -0.1215 REMARK 3 S TENSOR REMARK 3 S11: 0.0499 S12: 0.0298 S13: -0.1323 REMARK 3 S21: 0.0221 S22: -0.0005 S23: -0.0374 REMARK 3 S31: 0.1071 S32: 0.0236 S33: -0.0238 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 328 THROUGH 426 ) REMARK 3 ORIGIN FOR THE GROUP (A): 72.1813 -11.7930 29.1661 REMARK 3 T TENSOR REMARK 3 T11: 0.0809 T22: 0.0623 REMARK 3 T33: 0.0924 T12: -0.0115 REMARK 3 T13: 0.0060 T23: 0.0296 REMARK 3 L TENSOR REMARK 3 L11: 1.0694 L22: 0.8439 REMARK 3 L33: 0.6333 L12: -0.2980 REMARK 3 L13: 0.2524 L23: -0.1980 REMARK 3 S TENSOR REMARK 3 S11: -0.0101 S12: -0.1339 S13: -0.2090 REMARK 3 S21: 0.0543 S22: 0.0471 S23: 0.0630 REMARK 3 S31: 0.0893 S32: -0.0807 S33: -0.0206 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 427 THROUGH 538 ) REMARK 3 ORIGIN FOR THE GROUP (A): 98.8364 0.1694 23.5006 REMARK 3 T TENSOR REMARK 3 T11: 0.0727 T22: 0.0845 REMARK 3 T33: 0.1243 T12: -0.0051 REMARK 3 T13: -0.0079 T23: -0.0051 REMARK 3 L TENSOR REMARK 3 L11: 1.4539 L22: 0.6710 REMARK 3 L33: 0.9889 L12: -0.1029 REMARK 3 L13: -0.2333 L23: 0.1785 REMARK 3 S TENSOR REMARK 3 S11: 0.0481 S12: 0.0563 S13: 0.0339 REMARK 3 S21: -0.0098 S22: 0.0138 S23: -0.2292 REMARK 3 S31: -0.0633 S32: 0.1725 S33: -0.0421 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : 1 REMARK 3 NCS GROUP : 1 REMARK 3 NCS OPERATOR : 1 REMARK 3 REFERENCE SELECTION: CHAIN A REMARK 3 SELECTION : CHAIN B REMARK 3 ATOM PAIRS NUMBER : 2795 REMARK 3 RMSD : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4Z4W COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 02-APR-15. REMARK 100 THE DEPOSITION ID IS D_1000208564. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 20-FEB-15 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : MASSIF-1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.984463 REMARK 200 MONOCHROMATOR : SI(111) REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS3 2M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : NULL REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 63989 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.800 REMARK 200 RESOLUTION RANGE LOW (A) : 43.410 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.6 REMARK 200 DATA REDUNDANCY : 3.000 REMARK 200 R MERGE (I) : 0.07013 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 16.6100 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.80 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.86 REMARK 200 COMPLETENESS FOR SHELL (%) : 94.3 REMARK 200 DATA REDUNDANCY IN SHELL : 2.80 REMARK 200 R MERGE FOR SHELL (I) : 0.23370 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 5.990 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER 2.5.6 REMARK 200 STARTING MODEL: 3ONU REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 52.05 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.57 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: SODIUM NITRATE, BIS-TRIS PROPANE, REMARK 280 PEG3350, PH 7.5, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 291K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 39.67200 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 4620 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 24310 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -1.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 SER A 224 REMARK 465 ASN B 344 REMARK 465 THR B 345 REMARK 465 VAL B 346 REMARK 465 PRO B 347 REMARK 465 GLY B 348 REMARK 465 GLU B 349 REMARK 465 GLY B 350 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLU A 297 CG CD OE1 OE2 REMARK 470 GLN A 384 CG CD OE1 NE2 REMARK 470 GLU A 489 CG CD OE1 OE2 REMARK 470 ARG A 492 CG CD NE CZ NH1 NH2 REMARK 470 ARG A 524 CZ NH1 NH2 REMARK 470 GLU B 297 CG CD OE1 OE2 REMARK 470 HIS B 298 CG ND1 CD2 CE1 NE2 REMARK 470 ARG B 299 CG CD NE CZ NH1 NH2 REMARK 470 GLU B 319 CG CD OE1 OE2 REMARK 470 ASN B 351 CG OD1 ND2 REMARK 470 GLN B 384 CG CD OE1 NE2 REMARK 470 GLU B 489 CG CD OE1 OE2 REMARK 470 ARG B 492 CG CD NE CZ NH1 NH2 REMARK 470 ARG B 524 CZ NH1 NH2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 777 O HOH A 996 2.08 REMARK 500 O HOH A 1030 O HOH A 1090 2.17 REMARK 500 O HOH B 964 O HOH B 977 2.17 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 252 79.63 -152.14 REMARK 500 GLN A 260 51.25 -149.90 REMARK 500 GLN A 384 -33.17 -141.75 REMARK 500 VAL A 529 -159.07 -125.14 REMARK 500 ASN B 252 82.15 -154.03 REMARK 500 GLN B 260 50.19 -149.56 REMARK 500 HIS B 298 -78.58 -95.45 REMARK 500 GLN B 384 -33.74 -143.97 REMARK 500 VAL B 529 -155.41 -126.08 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A1118 DISTANCE = 5.81 ANGSTROMS REMARK 525 HOH A1119 DISTANCE = 5.84 ANGSTROMS REMARK 525 HOH A1120 DISTANCE = 5.90 ANGSTROMS REMARK 525 HOH A1121 DISTANCE = 6.46 ANGSTROMS REMARK 525 HOH B1089 DISTANCE = 5.81 ANGSTROMS REMARK 525 HOH B1090 DISTANCE = 5.81 ANGSTROMS REMARK 525 HOH B1091 DISTANCE = 5.85 ANGSTROMS REMARK 525 HOH B1092 DISTANCE = 6.45 ANGSTROMS REMARK 525 HOH B1093 DISTANCE = 6.77 ANGSTROMS DBREF 4Z4W A 224 538 UNP Q5F4T5 Q5F4T5_9CALI 224 538 DBREF 4Z4W B 224 538 UNP Q5F4T5 Q5F4T5_9CALI 224 538 SEQRES 1 A 315 SER LYS PRO PHE THR LEU PRO ILE LEU THR LEU GLY GLU SEQRES 2 A 315 LEU THR ASN SER ARG PHE PRO LEU PRO ILE ASP VAL LEU SEQRES 3 A 315 TYR THR ASN PRO ASN GLU SER ALA ILE VAL GLN CYS GLN SEQRES 4 A 315 ASN GLY ARG CYS THR LEU ASP GLY GLU LEU GLN GLY THR SEQRES 5 A 315 THR GLN LEU LEU PRO THR GLY ILE CYS ALA PHE ARG GLY SEQRES 6 A 315 LYS VAL THR GLN GLN VAL GLN ASP GLU HIS ARG GLY THR SEQRES 7 A 315 HIS TRP ASN MET THR VAL THR ASN LEU ASN GLY THR PRO SEQRES 8 A 315 PHE ASP PRO THR GLU ASP VAL PRO ALA PRO LEU GLY THR SEQRES 9 A 315 PRO ASP PHE SER GLY GLN ILE TYR GLY VAL ILE SER GLN SEQRES 10 A 315 ARG ASN THR ASN THR VAL PRO GLY GLU GLY ASN LEU PRO SEQRES 11 A 315 ALA ASN ARG ALA HIS GLU ALA VAL ILE ALA THR TYR SER SEQRES 12 A 315 PRO LYS PHE THR PRO LYS LEU GLY ASN ILE GLN PHE SER SEQRES 13 A 315 THR TRP GLU THR GLN ASP VAL SER SER GLY GLN PRO THR SEQRES 14 A 315 LYS PHE THR PRO VAL GLY LEU ALA SER VAL ASP ALA ASN SEQRES 15 A 315 SER HIS PHE ASP GLN TRP THR LEU PRO SER TYR SER GLY SEQRES 16 A 315 ALA LEU THR LEU ASN MET ASN LEU ALA PRO SER VAL ALA SEQRES 17 A 315 PRO VAL PHE PRO GLY GLU CYS LEU LEU PHE PHE ARG SER SEQRES 18 A 315 PHE ILE PRO LEU LYS GLY GLY TYR GLY ASN PRO ALA ILE SEQRES 19 A 315 ASP CYS LEU MET PRO GLN GLU TRP VAL GLN HIS LEU TYR SEQRES 20 A 315 GLN GLU SER ALA PRO SER LEU SER ASP VAL ALA LEU VAL SEQRES 21 A 315 ARG TYR VAL ASN PRO GLU THR GLY ARG THR LEU PHE GLU SEQRES 22 A 315 ALA LYS LEU HIS ARG ASN GLY PHE LEU THR VAL ALA ARG SEQRES 23 A 315 ASN SER ALA GLY PRO VAL VAL ALA PRO THR ASN GLY TYR SEQRES 24 A 315 PHE ARG PHE ASP SER TRP VAL ASN GLN PHE TYR THR LEU SEQRES 25 A 315 ALA PRO MET SEQRES 1 B 315 SER LYS PRO PHE THR LEU PRO ILE LEU THR LEU GLY GLU SEQRES 2 B 315 LEU THR ASN SER ARG PHE PRO LEU PRO ILE ASP VAL LEU SEQRES 3 B 315 TYR THR ASN PRO ASN GLU SER ALA ILE VAL GLN CYS GLN SEQRES 4 B 315 ASN GLY ARG CYS THR LEU ASP GLY GLU LEU GLN GLY THR SEQRES 5 B 315 THR GLN LEU LEU PRO THR GLY ILE CYS ALA PHE ARG GLY SEQRES 6 B 315 LYS VAL THR GLN GLN VAL GLN ASP GLU HIS ARG GLY THR SEQRES 7 B 315 HIS TRP ASN MET THR VAL THR ASN LEU ASN GLY THR PRO SEQRES 8 B 315 PHE ASP PRO THR GLU ASP VAL PRO ALA PRO LEU GLY THR SEQRES 9 B 315 PRO ASP PHE SER GLY GLN ILE TYR GLY VAL ILE SER GLN SEQRES 10 B 315 ARG ASN THR ASN THR VAL PRO GLY GLU GLY ASN LEU PRO SEQRES 11 B 315 ALA ASN ARG ALA HIS GLU ALA VAL ILE ALA THR TYR SER SEQRES 12 B 315 PRO LYS PHE THR PRO LYS LEU GLY ASN ILE GLN PHE SER SEQRES 13 B 315 THR TRP GLU THR GLN ASP VAL SER SER GLY GLN PRO THR SEQRES 14 B 315 LYS PHE THR PRO VAL GLY LEU ALA SER VAL ASP ALA ASN SEQRES 15 B 315 SER HIS PHE ASP GLN TRP THR LEU PRO SER TYR SER GLY SEQRES 16 B 315 ALA LEU THR LEU ASN MET ASN LEU ALA PRO SER VAL ALA SEQRES 17 B 315 PRO VAL PHE PRO GLY GLU CYS LEU LEU PHE PHE ARG SER SEQRES 18 B 315 PHE ILE PRO LEU LYS GLY GLY TYR GLY ASN PRO ALA ILE SEQRES 19 B 315 ASP CYS LEU MET PRO GLN GLU TRP VAL GLN HIS LEU TYR SEQRES 20 B 315 GLN GLU SER ALA PRO SER LEU SER ASP VAL ALA LEU VAL SEQRES 21 B 315 ARG TYR VAL ASN PRO GLU THR GLY ARG THR LEU PHE GLU SEQRES 22 B 315 ALA LYS LEU HIS ARG ASN GLY PHE LEU THR VAL ALA ARG SEQRES 23 B 315 ASN SER ALA GLY PRO VAL VAL ALA PRO THR ASN GLY TYR SEQRES 24 B 315 PHE ARG PHE ASP SER TRP VAL ASN GLN PHE TYR THR LEU SEQRES 25 B 315 ALA PRO MET HET EDO A 601 4 HET EDO A 602 4 HET FUL A 603 11 HET EDO B 601 4 HETNAM EDO 1,2-ETHANEDIOL HETNAM FUL BETA-L-FUCOPYRANOSE HETSYN EDO ETHYLENE GLYCOL HETSYN FUL BETA-L-FUCOSE; 6-DEOXY-BETA-L-GALACTOPYRANOSE; L- HETSYN 2 FUL FUCOSE; FUCOSE; 6-DEOXY-BETA-L-GALACTOSE FORMUL 3 EDO 3(C2 H6 O2) FORMUL 5 FUL C6 H12 O5 FORMUL 7 HOH *814(H2 O) HELIX 1 AA1 THR A 233 LEU A 237 5 5 HELIX 2 AA2 LEU A 279 ILE A 283 5 5 HELIX 3 AA3 VAL A 346 GLY A 350 5 5 HELIX 4 AA4 THR A 370 LEU A 373 5 4 HELIX 5 AA5 ASP A 403 HIS A 407 5 5 HELIX 6 AA6 PRO A 462 SER A 473 1 12 HELIX 7 AA7 THR B 233 LEU B 237 5 5 HELIX 8 AA8 LEU B 279 ILE B 283 5 5 HELIX 9 AA9 THR B 370 LEU B 373 5 4 HELIX 10 AB1 ASP B 403 HIS B 407 5 5 HELIX 11 AB2 PRO B 462 SER B 473 1 12 SHEET 1 AA1 4 ALA A 456 CYS A 459 0 SHEET 2 AA1 4 GLU A 437 PHE A 445 -1 N SER A 444 O ILE A 457 SHEET 3 AA1 4 VAL A 248 THR A 251 -1 N TYR A 250 O PHE A 441 SHEET 4 AA1 4 GLY A 513 VAL A 515 -1 O GLY A 513 N THR A 251 SHEET 1 AA2 6 ALA A 456 CYS A 459 0 SHEET 2 AA2 6 GLU A 437 PHE A 445 -1 N SER A 444 O ILE A 457 SHEET 3 AA2 6 PHE A 504 ALA A 508 -1 O VAL A 507 N CYS A 438 SHEET 4 AA2 6 THR A 493 HIS A 500 -1 N HIS A 500 O PHE A 504 SHEET 5 AA2 6 VAL A 480 VAL A 486 -1 N ALA A 481 O LEU A 499 SHEET 6 AA2 6 TYR A 522 VAL A 529 -1 O SER A 527 N LEU A 482 SHEET 1 AA3 8 GLY B 450 TYR B 452 0 SHEET 2 AA3 8 ALA A 354 ALA A 363 -1 N ASN A 355 O GLY B 451 SHEET 3 AA3 8 ASN A 375 THR A 380 -1 O SER A 379 N VAL A 361 SHEET 4 AA3 8 THR A 301 THR A 308 -1 N MET A 305 O ILE A 376 SHEET 5 AA3 8 PHE A 286 VAL A 294 -1 N ARG A 287 O THR A 308 SHEET 6 AA3 8 PRO A 391 LEU A 399 -1 O THR A 392 N GLY A 288 SHEET 7 AA3 8 GLN A 333 ARG A 341 -1 N TYR A 335 O VAL A 397 SHEET 8 AA3 8 ALA A 354 ALA A 363 -1 O ILE A 362 N ILE A 334 SHEET 1 AA4 8 GLY A 450 TYR A 452 0 SHEET 2 AA4 8 ALA B 354 ALA B 363 -1 O ASN B 355 N GLY A 451 SHEET 3 AA4 8 ASN B 375 THR B 380 -1 O SER B 379 N VAL B 361 SHEET 4 AA4 8 THR B 301 VAL B 307 -1 N MET B 305 O ILE B 376 SHEET 5 AA4 8 PHE B 286 GLN B 295 -1 N VAL B 294 O HIS B 302 SHEET 6 AA4 8 PRO B 391 LEU B 399 -1 O THR B 392 N GLY B 288 SHEET 7 AA4 8 GLN B 333 ARG B 341 -1 N TYR B 335 O VAL B 397 SHEET 8 AA4 8 ALA B 354 ALA B 363 -1 O ILE B 362 N ILE B 334 SHEET 1 AA5 4 ALA B 456 CYS B 459 0 SHEET 2 AA5 4 GLU B 437 PHE B 445 -1 N SER B 444 O ILE B 457 SHEET 3 AA5 4 VAL B 248 THR B 251 -1 N TYR B 250 O PHE B 441 SHEET 4 AA5 4 GLY B 513 VAL B 515 -1 O GLY B 513 N THR B 251 SHEET 1 AA6 6 ALA B 456 CYS B 459 0 SHEET 2 AA6 6 GLU B 437 PHE B 445 -1 N SER B 444 O ILE B 457 SHEET 3 AA6 6 PHE B 504 ALA B 508 -1 O VAL B 507 N CYS B 438 SHEET 4 AA6 6 THR B 493 HIS B 500 -1 N HIS B 500 O PHE B 504 SHEET 5 AA6 6 VAL B 480 VAL B 486 -1 N TYR B 485 O LEU B 494 SHEET 6 AA6 6 TYR B 522 VAL B 529 -1 O SER B 527 N LEU B 482 CRYST1 65.290 79.344 69.576 90.00 100.78 90.00 P 1 21 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.015316 0.000000 0.002917 0.00000 SCALE2 0.000000 0.012603 0.000000 0.00000 SCALE3 0.000000 0.000000 0.014631 0.00000