HEADER HORMONE 03-APR-15 4Z63 TITLE THE PLANT PEPTIDE HORMONE RECEPTOR IN ARABIDOPSIS COMPND MOL_ID: 1; COMPND 2 MOLECULE: PHYTOSULFOKINE RECEPTOR 1; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: UNP RESIDUES 24-648; COMPND 5 SYNONYM: ATPSKR1,PHYTOSULFOKINE LRR RECEPTOR KINASE 1; COMPND 6 EC: 2.7.11.1; COMPND 7 ENGINEERED: YES; COMPND 8 MOL_ID: 2; COMPND 9 MOLECULE: PHYTOSULFOKINE; COMPND 10 CHAIN: P; COMPND 11 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ARABIDOPSIS THALIANA; SOURCE 3 ORGANISM_COMMON: MOUSE-EAR CRESS; SOURCE 4 ORGANISM_TAXID: 3702; SOURCE 5 GENE: PSKR1, PSKR, AT2G02220, F5O4.1; SOURCE 6 EXPRESSION_SYSTEM: INSECT CELL EXPRESSION VECTOR PTIE1; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 266783; SOURCE 8 MOL_ID: 2; SOURCE 9 SYNTHETIC: YES; SOURCE 10 ORGANISM_SCIENTIFIC: ARABIDOPSIS; SOURCE 11 ORGANISM_TAXID: 3701 KEYWDS HORMONE RECEPTOR, HORMONE EXPDTA X-RAY DIFFRACTION AUTHOR J.CHAI,J.WANG,Z.HAN REVDAT 4 15-NOV-23 4Z63 1 REMARK REVDAT 3 08-NOV-23 4Z63 1 HETSYN REVDAT 2 29-JUL-20 4Z63 1 COMPND REMARK HETNAM LINK REVDAT 2 2 1 SITE REVDAT 1 02-MAR-16 4Z63 0 JRNL AUTH J.WANG,H.LI,Z.HAN,H.ZHANG,T.WANG,G.LIN,J.CHANG,W.YANG,J.CHAI JRNL TITL ALLOSTERIC RECEPTOR ACTIVATION BY THE PLANT PEPTIDE HORMONE JRNL TITL 2 PHYTOSULFOKINE JRNL REF NATURE V. 525 265 2015 JRNL REFN ESSN 1476-4687 JRNL PMID 26308901 JRNL DOI 10.1038/NATURE14858 REMARK 2 REMARK 2 RESOLUTION. 2.51 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.8_1069 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.51 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 33.54 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 98.1 REMARK 3 NUMBER OF REFLECTIONS : 36369 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.231 REMARK 3 R VALUE (WORKING SET) : 0.229 REMARK 3 FREE R VALUE : 0.276 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1817 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 33.5474 - 5.9011 0.98 2921 137 0.2317 0.2719 REMARK 3 2 5.9011 - 4.6880 0.99 2735 166 0.1922 0.2168 REMARK 3 3 4.6880 - 4.0966 0.99 2730 138 0.1602 0.1976 REMARK 3 4 4.0966 - 3.7225 0.89 2428 122 0.2127 0.2263 REMARK 3 5 3.7225 - 3.4560 0.96 2590 129 0.2655 0.3341 REMARK 3 6 3.4560 - 3.2524 0.99 2667 143 0.2561 0.3031 REMARK 3 7 3.2524 - 3.0897 1.00 2667 145 0.2588 0.2926 REMARK 3 8 3.0897 - 2.9553 1.00 2647 161 0.2565 0.3618 REMARK 3 9 2.9553 - 2.8415 1.00 2660 133 0.2533 0.3878 REMARK 3 10 2.8415 - 2.7435 1.00 2642 145 0.2358 0.2596 REMARK 3 11 2.7435 - 2.6578 0.99 2630 138 0.2807 0.3564 REMARK 3 12 2.6578 - 2.5818 0.99 2647 133 0.2672 0.3191 REMARK 3 13 2.5818 - 2.5139 0.97 2588 127 0.2673 0.3508 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.340 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 29.280 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.008 5037 REMARK 3 ANGLE : 1.481 6832 REMARK 3 CHIRALITY : 0.123 784 REMARK 3 PLANARITY : 0.008 873 REMARK 3 DIHEDRAL : 16.213 1865 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4Z63 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 07-APR-15. REMARK 100 THE DEPOSITION ID IS D_1000208676. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 09-DEC-13 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRF REMARK 200 BEAMLINE : BL17U REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : BRUKER SMART 6500 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 36369 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.500 REMARK 200 RESOLUTION RANGE LOW (A) : 99.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.4 REMARK 200 DATA REDUNDANCY : 5.300 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 26.0000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHENIX REMARK 200 STARTING MODEL: 4Z5W REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 67.93 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.84 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1M BIS-TRIS 5.5, 2.0M (NH4)2SO4, REMARK 280 VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 291K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 43 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y,X,Z+3/4 REMARK 290 4555 Y,-X,Z+1/4 REMARK 290 5555 -X,Y,-Z REMARK 290 6555 X,-Y,-Z+1/2 REMARK 290 7555 Y,X,-Z+1/4 REMARK 290 8555 -Y,-X,-Z+3/4 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 121.24600 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 181.86900 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 60.62300 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 121.24600 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 60.62300 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 181.86900 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3890 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 26160 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: 28.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, P REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLU A 24 REMARK 465 SER A 25 REMARK 465 GLN A 26 REMARK 465 THR A 27 REMARK 465 THR A 28 REMARK 465 SER A 29 REMARK 465 GLU A 640 REMARK 465 GLY A 641 REMARK 465 THR A 642 REMARK 465 GLU A 643 REMARK 465 SER A 644 REMARK 465 ALA A 645 REMARK 465 LEU A 646 REMARK 465 ILE A 647 REMARK 465 LYS A 648 REMARK 465 HIS A 649 REMARK 465 HIS A 650 REMARK 465 HIS A 651 REMARK 465 HIS A 652 REMARK 465 HIS A 653 REMARK 465 HIS A 654 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O3 NAG A 705 O HOH A 801 2.10 REMARK 500 O HOH A 802 O HOH A 934 2.12 REMARK 500 ND2 ASN A 301 C2 NAG A 708 2.15 REMARK 500 O3 NAG A 705 O HOH A 802 2.16 REMARK 500 NH1 ARG A 331 O HOH A 803 2.17 REMARK 500 O HOH A 934 O HOH A 935 2.17 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 OD1 ASP A 41 OE1 GLU A 511 3564 2.06 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 ARG A 492 CA ARG A 492 C 0.158 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 GLU A 358 OE1 - CD - OE2 ANGL. DEV. = -8.2 DEGREES REMARK 500 SER A 491 O - C - N ANGL. DEV. = -15.6 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER A 72 -113.71 58.51 REMARK 500 ASN A 73 -82.79 -105.09 REMARK 500 ASP A 114 -149.07 59.41 REMARK 500 SER A 133 68.26 60.15 REMARK 500 LEU A 267 66.65 -119.62 REMARK 500 ASN A 378 70.71 60.92 REMARK 500 ASN A 473 -168.24 -124.63 REMARK 500 THR A 490 -76.93 -105.22 REMARK 500 ASN A 533 -169.80 -126.95 REMARK 500 ASN A 557 -169.55 -126.76 REMARK 500 ASN A 605 -169.83 -126.34 REMARK 500 HIS A 634 -2.74 73.39 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 SER A 491 ARG A 492 146.11 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: MAIN CHAIN PLANARITY REMARK 500 REMARK 500 THE FOLLOWING RESIDUES HAVE A PSEUDO PLANARITY REMARK 500 TORSION ANGLE, C(I) - CA(I) - N(I+1) - O(I), GREATER REMARK 500 10.0 DEGREES. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 500 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 500 I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI ANGLE REMARK 500 SER A 491 -21.58 REMARK 500 REMARK 500 REMARK: NULL REMARK 610 REMARK 610 MISSING HETEROATOM REMARK 610 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 610 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 610 I=INSERTION CODE): REMARK 610 M RES C SSEQI REMARK 610 NAG A 709 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4Z5W RELATED DB: PDB REMARK 900 RELATED ID: 4Z61 RELATED DB: PDB REMARK 900 RELATED ID: 4Z62 RELATED DB: PDB REMARK 900 RELATED ID: 4Z64 RELATED DB: PDB DBREF 4Z63 A 24 648 UNP Q9ZVR7 PSKR1_ARATH 24 648 DBREF 4Z63 P 28 32 PDB 4Z63 4Z63 28 32 SEQADV 4Z63 HIS A 649 UNP Q9ZVR7 EXPRESSION TAG SEQADV 4Z63 HIS A 650 UNP Q9ZVR7 EXPRESSION TAG SEQADV 4Z63 HIS A 651 UNP Q9ZVR7 EXPRESSION TAG SEQADV 4Z63 HIS A 652 UNP Q9ZVR7 EXPRESSION TAG SEQADV 4Z63 HIS A 653 UNP Q9ZVR7 EXPRESSION TAG SEQADV 4Z63 HIS A 654 UNP Q9ZVR7 EXPRESSION TAG SEQRES 1 A 631 GLU SER GLN THR THR SER ARG CYS HIS PRO HIS ASP LEU SEQRES 2 A 631 GLU ALA LEU ARG ASP PHE ILE ALA HIS LEU GLU PRO LYS SEQRES 3 A 631 PRO ASP GLY TRP ILE ASN SER SER SER SER THR ASP CYS SEQRES 4 A 631 CYS ASN TRP THR GLY ILE THR CYS ASN SER ASN ASN THR SEQRES 5 A 631 GLY ARG VAL ILE ARG LEU GLU LEU GLY ASN LYS LYS LEU SEQRES 6 A 631 SER GLY LYS LEU SER GLU SER LEU GLY LYS LEU ASP GLU SEQRES 7 A 631 ILE ARG VAL LEU ASN LEU SER ARG ASN PHE ILE LYS ASP SEQRES 8 A 631 SER ILE PRO LEU SER ILE PHE ASN LEU LYS ASN LEU GLN SEQRES 9 A 631 THR LEU ASP LEU SER SER ASN ASP LEU SER GLY GLY ILE SEQRES 10 A 631 PRO THR SER ILE ASN LEU PRO ALA LEU GLN SER PHE ASP SEQRES 11 A 631 LEU SER SER ASN LYS PHE ASN GLY SER LEU PRO SER HIS SEQRES 12 A 631 ILE CYS HIS ASN SER THR GLN ILE ARG VAL VAL LYS LEU SEQRES 13 A 631 ALA VAL ASN TYR PHE ALA GLY ASN PHE THR SER GLY PHE SEQRES 14 A 631 GLY LYS CYS VAL LEU LEU GLU HIS LEU CYS LEU GLY MET SEQRES 15 A 631 ASN ASP LEU THR GLY ASN ILE PRO GLU ASP LEU PHE HIS SEQRES 16 A 631 LEU LYS ARG LEU ASN LEU LEU GLY ILE GLN GLU ASN ARG SEQRES 17 A 631 LEU SER GLY SER LEU SER ARG GLU ILE ARG ASN LEU SER SEQRES 18 A 631 SER LEU VAL ARG LEU ASP VAL SER TRP ASN LEU PHE SER SEQRES 19 A 631 GLY GLU ILE PRO ASP VAL PHE ASP GLU LEU PRO GLN LEU SEQRES 20 A 631 LYS PHE PHE LEU GLY GLN THR ASN GLY PHE ILE GLY GLY SEQRES 21 A 631 ILE PRO LYS SER LEU ALA ASN SER PRO SER LEU ASN LEU SEQRES 22 A 631 LEU ASN LEU ARG ASN ASN SER LEU SER GLY ARG LEU MET SEQRES 23 A 631 LEU ASN CYS THR ALA MET ILE ALA LEU ASN SER LEU ASP SEQRES 24 A 631 LEU GLY THR ASN ARG PHE ASN GLY ARG LEU PRO GLU ASN SEQRES 25 A 631 LEU PRO ASP CYS LYS ARG LEU LYS ASN VAL ASN LEU ALA SEQRES 26 A 631 ARG ASN THR PHE HIS GLY GLN VAL PRO GLU SER PHE LYS SEQRES 27 A 631 ASN PHE GLU SER LEU SER TYR PHE SER LEU SER ASN SER SEQRES 28 A 631 SER LEU ALA ASN ILE SER SER ALA LEU GLY ILE LEU GLN SEQRES 29 A 631 HIS CYS LYS ASN LEU THR THR LEU VAL LEU THR LEU ASN SEQRES 30 A 631 PHE HIS GLY GLU ALA LEU PRO ASP ASP SER SER LEU HIS SEQRES 31 A 631 PHE GLU LYS LEU LYS VAL LEU VAL VAL ALA ASN CYS ARG SEQRES 32 A 631 LEU THR GLY SER MET PRO ARG TRP LEU SER SER SER ASN SEQRES 33 A 631 GLU LEU GLN LEU LEU ASP LEU SER TRP ASN ARG LEU THR SEQRES 34 A 631 GLY ALA ILE PRO SER TRP ILE GLY ASP PHE LYS ALA LEU SEQRES 35 A 631 PHE TYR LEU ASP LEU SER ASN ASN SER PHE THR GLY GLU SEQRES 36 A 631 ILE PRO LYS SER LEU THR LYS LEU GLU SER LEU THR SER SEQRES 37 A 631 ARG ASN ILE SER VAL ASN GLU PRO SER PRO ASP PHE PRO SEQRES 38 A 631 PHE PHE MET LYS ARG ASN GLU SER ALA ARG ALA LEU GLN SEQRES 39 A 631 TYR ASN GLN ILE PHE GLY PHE PRO PRO THR ILE GLU LEU SEQRES 40 A 631 GLY HIS ASN ASN LEU SER GLY PRO ILE TRP GLU GLU PHE SEQRES 41 A 631 GLY ASN LEU LYS LYS LEU HIS VAL PHE ASP LEU LYS TRP SEQRES 42 A 631 ASN ALA LEU SER GLY SER ILE PRO SER SER LEU SER GLY SEQRES 43 A 631 MET THR SER LEU GLU ALA LEU ASP LEU SER ASN ASN ARG SEQRES 44 A 631 LEU SER GLY SER ILE PRO VAL SER LEU GLN GLN LEU SER SEQRES 45 A 631 PHE LEU SER LYS PHE SER VAL ALA TYR ASN ASN LEU SER SEQRES 46 A 631 GLY VAL ILE PRO SER GLY GLY GLN PHE GLN THR PHE PRO SEQRES 47 A 631 ASN SER SER PHE GLU SER ASN HIS LEU CYS GLY GLU HIS SEQRES 48 A 631 ARG PHE PRO CYS SER GLU GLY THR GLU SER ALA LEU ILE SEQRES 49 A 631 LYS HIS HIS HIS HIS HIS HIS SEQRES 1 P 5 TYS ILE TYS THR GLN HET TYS P 28 16 HET TYS P 30 16 HET NAG A 701 14 HET NAG A 702 14 HET NAG A 703 14 HET NAG A 704 14 HET NAG A 705 14 HET NAG A 706 14 HET NAG A 707 14 HET NAG A 708 14 HET NAG A 709 13 HETNAM TYS O-SULFO-L-TYROSINE HETNAM NAG 2-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE HETSYN NAG N-ACETYL-BETA-D-GLUCOSAMINE; 2-ACETAMIDO-2-DEOXY-BETA- HETSYN 2 NAG D-GLUCOSE; 2-ACETAMIDO-2-DEOXY-D-GLUCOSE; 2-ACETAMIDO- HETSYN 3 NAG 2-DEOXY-GLUCOSE; N-ACETYL-D-GLUCOSAMINE FORMUL 2 TYS 2(C9 H11 N O6 S) FORMUL 3 NAG 9(C8 H15 N O6) FORMUL 12 HOH *145(H2 O) HELIX 1 AA1 HIS A 32 HIS A 45 1 14 HELIX 2 AA2 PRO A 50 ILE A 54 5 5 HELIX 3 AA3 ASP A 61 TRP A 65 5 5 HELIX 4 AA4 SER A 93 LEU A 99 5 7 HELIX 5 AA5 PRO A 117 LEU A 123 5 7 HELIX 6 AA6 PRO A 164 HIS A 169 5 6 HELIX 7 AA7 GLY A 191 CYS A 195 5 5 HELIX 8 AA8 PRO A 213 LEU A 219 5 7 HELIX 9 AA9 SER A 237 LEU A 243 5 7 HELIX 10 AB1 VAL A 263 LEU A 267 5 5 HELIX 11 AB2 PRO A 285 ASN A 290 1 6 HELIX 12 AB3 ASN A 335 CYS A 339 5 5 HELIX 13 AB4 PRO A 357 PHE A 363 5 7 HELIX 14 AB5 ASN A 378 GLN A 387 1 10 HELIX 15 AB6 PRO A 432 SER A 438 5 7 HELIX 16 AB7 PRO A 456 ASP A 461 5 6 HELIX 17 AB8 PRO A 480 LYS A 485 5 6 HELIX 18 AB9 LEU A 486 SER A 491 1 6 HELIX 19 AC1 GLN A 520 PHE A 524 5 5 HELIX 20 AC2 TRP A 540 LEU A 546 5 7 HELIX 21 AC3 PRO A 564 MET A 570 5 7 HELIX 22 AC4 PRO A 588 LEU A 594 5 7 HELIX 23 AC5 GLN A 616 PHE A 620 5 5 HELIX 24 AC6 PRO A 621 PHE A 625 5 5 SHEET 1 AA1 5 LEU A 46 GLU A 47 0 SHEET 2 AA1 5 SER A 89 LYS A 91 -1 O SER A 89 N GLU A 47 SHEET 3 AA1 5 PHE A 111 ASP A 114 1 O LYS A 113 N GLY A 90 SHEET 4 AA1 5 ASP A 135 GLY A 138 1 O ASP A 135 N ILE A 112 SHEET 5 AA1 5 LYS A 158 PHE A 159 1 O LYS A 158 N LEU A 136 SHEET 1 AA222 ILE A 68 CYS A 70 0 SHEET 2 AA222 VAL A 78 GLU A 82 -1 O ILE A 79 N THR A 69 SHEET 3 AA222 VAL A 104 ASN A 106 1 O VAL A 104 N LEU A 81 SHEET 4 AA222 THR A 128 ASP A 130 1 O ASP A 130 N LEU A 105 SHEET 5 AA222 SER A 151 ASP A 153 1 O ASP A 153 N LEU A 129 SHEET 6 AA222 VAL A 176 LYS A 178 1 O LYS A 178 N PHE A 152 SHEET 7 AA222 HIS A 200 CYS A 202 1 O CYS A 202 N VAL A 177 SHEET 8 AA222 LEU A 224 GLY A 226 1 O GLY A 226 N LEU A 201 SHEET 9 AA222 ARG A 248 ASP A 250 1 O ASP A 250 N LEU A 225 SHEET 10 AA222 PHE A 272 LEU A 274 1 O LEU A 274 N LEU A 249 SHEET 11 AA222 LEU A 296 ASN A 298 1 O ASN A 298 N PHE A 273 SHEET 12 AA222 SER A 320 ASP A 322 1 O ASP A 322 N LEU A 297 SHEET 13 AA222 ASN A 344 ASN A 346 1 O ASN A 344 N LEU A 321 SHEET 14 AA222 TYR A 368 SER A 370 1 O TYR A 368 N VAL A 345 SHEET 15 AA222 THR A 394 VAL A 396 1 O VAL A 396 N PHE A 369 SHEET 16 AA222 VAL A 419 VAL A 421 1 O VAL A 419 N LEU A 395 SHEET 17 AA222 LEU A 443 ASP A 445 1 O ASP A 445 N LEU A 420 SHEET 18 AA222 TYR A 467 ASP A 469 1 O ASP A 469 N LEU A 444 SHEET 19 AA222 THR A 527 GLU A 529 1 O GLU A 529 N LEU A 468 SHEET 20 AA222 VAL A 551 ASP A 553 1 O VAL A 551 N ILE A 528 SHEET 21 AA222 ALA A 575 ASP A 577 1 O ALA A 575 N PHE A 552 SHEET 22 AA222 LYS A 599 SER A 601 1 O LYS A 599 N LEU A 576 SHEET 1 AA3 2 ALA A 185 ASN A 187 0 SHEET 2 AA3 2 ASP A 207 THR A 209 1 O THR A 209 N GLY A 186 SHEET 1 AA4 3 SER A 233 SER A 235 0 SHEET 2 AA4 3 LEU A 255 GLU A 259 1 O SER A 257 N GLY A 234 SHEET 3 AA4 3 GLY A 279 ILE A 281 1 O GLY A 279 N PHE A 256 SHEET 1 AA5 3 SER A 305 ARG A 307 0 SHEET 2 AA5 3 ARG A 327 GLY A 330 1 O ASN A 329 N GLY A 306 SHEET 3 AA5 3 THR A 351 PHE A 352 1 O THR A 351 N PHE A 328 SHEET 1 AA6 2 THR A 452 ALA A 454 0 SHEET 2 AA6 2 SER A 474 THR A 476 1 O THR A 476 N GLY A 453 SHEET 1 AA7 3 LEU A 516 TYR A 518 0 SHEET 2 AA7 3 PHE A 505 MET A 507 -1 N PHE A 505 O TYR A 518 SHEET 3 AA7 3 ILE P 29 TYS P 30 -1 O TYS P 30 N PHE A 506 SHEET 1 AA8 3 SER A 584 GLY A 585 0 SHEET 2 AA8 3 ASN A 606 ILE A 611 1 O SER A 608 N GLY A 585 SHEET 3 AA8 3 HIS A 629 GLY A 632 1 O HIS A 629 N LEU A 607 SSBOND 1 CYS A 31 CYS A 62 1555 1555 2.05 SSBOND 2 CYS A 63 CYS A 70 1555 1555 2.03 SSBOND 3 CYS A 168 CYS A 195 1555 1555 2.03 SSBOND 4 CYS A 312 CYS A 339 1555 1555 2.05 SSBOND 5 CYS A 631 CYS A 638 1555 1555 2.04 LINK ND2 ASN A 106 C1 NAG A 704 1555 1555 1.44 LINK ND2 ASN A 170 C1 NAG A 707 1555 1555 1.44 LINK ND2 ASN A 301 C1 NAG A 708 1555 1555 1.45 LINK ND2 ASN A 311 C1 NAG A 705 1555 1555 1.45 LINK ND2 ASN A 373 C1 NAG A 701 1555 1555 1.45 LINK ND2 ASN A 378 C1 NAG A 706 1555 1555 1.46 LINK ND2 ASN A 391 C1 NAG A 703 1555 1555 1.45 LINK ND2 ASN A 472 C1 NAG A 702 1555 1555 1.44 LINK C TYS P 28 N ILE P 29 1555 1555 1.33 LINK C ILE P 29 N TYS P 30 1555 1555 1.32 LINK C TYS P 30 N THR P 31 1555 1555 1.32 CISPEP 1 GLU A 47 PRO A 48 0 -1.92 CISPEP 2 PHE A 636 PRO A 637 0 -4.78 CRYST1 92.892 92.892 242.492 90.00 90.00 90.00 P 43 2 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.010765 0.000000 0.000000 0.00000 SCALE2 0.000000 0.010765 0.000000 0.00000 SCALE3 0.000000 0.000000 0.004124 0.00000