HEADER HYDROLASE 06-APR-15 4Z72 TITLE CRYSTAL STRUCTURE OF INORGANIC PYROPHOSPHATASE FROM MYCOBACTERIUM TITLE 2 TUBERCULOSIS IN COMPLEX WITH TWO PHOSPHATE IONS COMPND MOL_ID: 1; COMPND 2 MOLECULE: INORGANIC PYROPHOSPHATASE; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: PYROPHOSPHATE PHOSPHO-HYDROLASE,PPASE; COMPND 5 EC: 3.6.1.1; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MYCOBACTERIUM TUBERCULOSIS (STRAIN ATCC 25618 / SOURCE 3 H37RV); SOURCE 4 ORGANISM_TAXID: 83332; SOURCE 5 STRAIN: ATCC 25618 / H37RV; SOURCE 6 GENE: PPA, RV3628, MTCY15C10.24; SOURCE 7 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 8 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS PYROPHOSPHATASE, PHOSPHATASE, HYDROLASE, INORGANIC PYROPHOSPHATE EXPDTA X-RAY DIFFRACTION AUTHOR A.C.PRATT,T.BISWAS,S.BARNARD-BRITSON,O.V.TSODIKOV REVDAT 4 27-SEP-23 4Z72 1 JRNL REMARK LINK REVDAT 3 14-OCT-15 4Z72 1 JRNL REVDAT 2 09-SEP-15 4Z72 1 JRNL REVDAT 1 26-AUG-15 4Z72 0 JRNL AUTH A.C.PRATT,S.W.DEWAGE,A.H.PANG,T.BISWAS,S.BARNARD-BRITSON, JRNL AUTH 2 G.A.CISNEROS,O.V.TSODIKOV JRNL TITL STRUCTURAL AND COMPUTATIONAL DISSECTION OF THE CATALYTIC JRNL TITL 2 MECHANISM OF THE INORGANIC PYROPHOSPHATASE FROM JRNL TITL 3 MYCOBACTERIUM TUBERCULOSIS. JRNL REF J.STRUCT.BIOL. V. 192 76 2015 JRNL REFN ESSN 1095-8657 JRNL PMID 26296329 JRNL DOI 10.1016/J.JSB.2015.08.010 REMARK 2 REMARK 2 RESOLUTION. 2.35 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0049 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.35 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 40.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.4 REMARK 3 NUMBER OF REFLECTIONS : 11538 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.210 REMARK 3 R VALUE (WORKING SET) : 0.208 REMARK 3 FREE R VALUE : 0.241 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 606 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.35 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.41 REMARK 3 REFLECTION IN BIN (WORKING SET) : 809 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.08 REMARK 3 BIN R VALUE (WORKING SET) : 0.2980 REMARK 3 BIN FREE R VALUE SET COUNT : 50 REMARK 3 BIN FREE R VALUE : 0.3110 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1278 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 13 REMARK 3 SOLVENT ATOMS : 30 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 39.44 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.53000 REMARK 3 B22 (A**2) : 0.53000 REMARK 3 B33 (A**2) : -1.71000 REMARK 3 B12 (A**2) : 0.26000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.229 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.195 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.148 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 6.556 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.941 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.926 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 1330 ; 0.007 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): 1219 ; 0.005 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 1797 ; 1.492 ; 1.966 REMARK 3 BOND ANGLES OTHERS (DEGREES): 2810 ; 0.728 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 159 ; 5.898 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 69 ;26.683 ;23.913 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 206 ;14.014 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 10 ;13.223 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 187 ; 0.071 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 1496 ; 0.004 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 300 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 647 ; 2.038 ; 3.866 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 640 ; 1.654 ; 3.842 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 797 ; 2.607 ; 5.758 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 798 ; 2.606 ; 5.764 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 682 ; 2.097 ; 4.068 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 675 ; 2.088 ; 4.055 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 989 ; 3.359 ; 5.978 REMARK 3 LONG RANGE B REFINED ATOMS (A**2): 1457 ; 5.383 ;30.905 REMARK 3 LONG RANGE B OTHER ATOMS (A**2): 1442 ; 5.196 ;30.766 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 4Z72 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 06-APR-15. REMARK 100 THE DEPOSITION ID IS D_1000208725. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 07-MAR-14 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 22-ID REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97872 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 225 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 11538 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.350 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.3 REMARK 200 DATA REDUNDANCY : 7.100 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 18.1000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 4Z71 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 65.25 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.54 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: RESERVOIR: 1.6 M KH2PO4, 100 MM HEPES REMARK 280 PH 7.75 AND 2 MM CACL2, VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 294K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 63 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z REMARK 290 3555 -X+Y,-X,Z REMARK 290 4555 -X,-Y,Z+1/2 REMARK 290 5555 Y,-X+Y,Z+1/2 REMARK 290 6555 X-Y,X,Z+1/2 REMARK 290 7555 Y,X,-Z REMARK 290 8555 X-Y,-Y,-Z REMARK 290 9555 -X,-X+Y,-Z REMARK 290 10555 -Y,-X,-Z+1/2 REMARK 290 11555 -X+Y,Y,-Z+1/2 REMARK 290 12555 X,X-Y,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 48.36600 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 48.36600 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 48.36600 REMARK 290 SMTRY1 7 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 7 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 9 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 9 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 9 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 10 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 10 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 10 0.000000 0.000000 -1.000000 48.36600 REMARK 290 SMTRY1 11 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 11 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 11 0.000000 0.000000 -1.000000 48.36600 REMARK 290 SMTRY1 12 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 12 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 12 0.000000 0.000000 -1.000000 48.36600 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: HEXAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: HEXAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 17160 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 35840 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -323.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -0.500000 -0.866025 0.000000 99.31900 REMARK 350 BIOMT2 2 0.866025 -0.500000 0.000000 -172.02555 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 3 -0.500000 0.866025 0.000000 198.63800 REMARK 350 BIOMT2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 350 BIOMT3 3 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 4 0.500000 -0.866025 0.000000 0.00000 REMARK 350 BIOMT2 4 -0.866025 -0.500000 0.000000 0.00000 REMARK 350 BIOMT3 4 0.000000 0.000000 -1.000000 241.83000 REMARK 350 BIOMT1 5 -1.000000 0.000000 0.000000 198.63800 REMARK 350 BIOMT2 5 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 5 0.000000 0.000000 -1.000000 241.83000 REMARK 350 BIOMT1 6 0.500000 0.866025 0.000000 99.31900 REMARK 350 BIOMT2 6 0.866025 -0.500000 0.000000 -172.02555 REMARK 350 BIOMT3 6 0.000000 0.000000 -1.000000 241.83000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 320 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 325 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A -8 REMARK 465 ALA A -7 REMARK 465 HIS A -6 REMARK 465 HIS A -5 REMARK 465 HIS A -4 REMARK 465 HIS A -3 REMARK 465 HIS A -2 REMARK 465 HIS A -1 REMARK 465 GLY A 160 REMARK 465 THR A 161 REMARK 465 HIS A 162 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 VAL A 66 -167.62 -101.28 REMARK 500 MET A 82 148.30 -170.89 REMARK 500 ASP A 89 59.83 -156.55 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 204 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 18 OE2 REMARK 620 2 ASP A 29 OD2 78.6 REMARK 620 3 HOH A 321 O 104.3 61.4 REMARK 620 4 HOH A 324 O 159.0 84.6 78.1 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 205 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 LYS A 127 O REMARK 620 2 ASP A 128 O 70.0 REMARK 620 3 GLU A 130 O 81.6 104.7 REMARK 620 4 LYS A 133 O 96.5 157.4 90.6 REMARK 620 5 HOH A 326 O 99.5 74.7 178.4 90.5 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 203 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH A 305 O REMARK 620 2 HOH A 314 O 167.6 REMARK 620 3 HOH A 327 O 87.9 89.2 REMARK 620 N 1 2 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PO4 A 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PO4 A 202 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CA A 203 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CA A 204 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CA A 205 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4Z70 RELATED DB: PDB REMARK 900 RELATED ID: 4Z71 RELATED DB: PDB DBREF 4Z72 A 1 162 UNP P9WI55 IPYR_MYCTU 1 162 SEQADV 4Z72 MET A -8 UNP P9WI55 INITIATING METHIONINE SEQADV 4Z72 ALA A -7 UNP P9WI55 EXPRESSION TAG SEQADV 4Z72 HIS A -6 UNP P9WI55 EXPRESSION TAG SEQADV 4Z72 HIS A -5 UNP P9WI55 EXPRESSION TAG SEQADV 4Z72 HIS A -4 UNP P9WI55 EXPRESSION TAG SEQADV 4Z72 HIS A -3 UNP P9WI55 EXPRESSION TAG SEQADV 4Z72 HIS A -2 UNP P9WI55 EXPRESSION TAG SEQADV 4Z72 HIS A -1 UNP P9WI55 EXPRESSION TAG SEQADV 4Z72 ALA A 0 UNP P9WI55 EXPRESSION TAG SEQRES 1 A 171 MET ALA HIS HIS HIS HIS HIS HIS ALA MET GLN PHE ASP SEQRES 2 A 171 VAL THR ILE GLU ILE PRO LYS GLY GLN ARG ASN LYS TYR SEQRES 3 A 171 GLU VAL ASP HIS GLU THR GLY ARG VAL ARG LEU ASP ARG SEQRES 4 A 171 TYR LEU TYR THR PRO MET ALA TYR PRO THR ASP TYR GLY SEQRES 5 A 171 PHE ILE GLU ASP THR LEU GLY ASP ASP GLY ASP PRO LEU SEQRES 6 A 171 ASP ALA LEU VAL LEU LEU PRO GLN PRO VAL PHE PRO GLY SEQRES 7 A 171 VAL LEU VAL ALA ALA ARG PRO VAL GLY MET PHE ARG MET SEQRES 8 A 171 VAL ASP GLU HIS GLY GLY ASP ASP LYS VAL LEU CYS VAL SEQRES 9 A 171 PRO ALA GLY ASP PRO ARG TRP ASP HIS VAL GLN ASP ILE SEQRES 10 A 171 GLY ASP VAL PRO ALA PHE GLU LEU ASP ALA ILE LYS HIS SEQRES 11 A 171 PHE PHE VAL HIS TYR LYS ASP LEU GLU PRO GLY LYS PHE SEQRES 12 A 171 VAL LYS ALA ALA ASP TRP VAL ASP ARG ALA GLU ALA GLU SEQRES 13 A 171 ALA GLU VAL GLN ARG SER VAL GLU ARG PHE LYS ALA GLY SEQRES 14 A 171 THR HIS HET PO4 A 201 5 HET PO4 A 202 5 HET CA A 203 1 HET CA A 204 1 HET CA A 205 1 HETNAM PO4 PHOSPHATE ION HETNAM CA CALCIUM ION FORMUL 2 PO4 2(O4 P 3-) FORMUL 4 CA 3(CA 2+) FORMUL 7 HOH *30(H2 O) HELIX 1 AA1 ASP A 99 ASP A 103 5 5 HELIX 2 AA2 ASP A 107 VAL A 111 5 5 HELIX 3 AA3 PRO A 112 TYR A 126 1 15 HELIX 4 AA4 ARG A 143 ALA A 159 1 17 SHEET 1 AA1 8 GLY A 87 GLY A 88 0 SHEET 2 AA1 8 VAL A 135 ASP A 142 0 SHEET 3 AA1 8 PHE A 3 ILE A 9 0 SHEET 4 AA1 8 ASP A 41 ILE A 45 -1 O TYR A 42 N ILE A 9 SHEET 5 AA1 8 ASP A 57 VAL A 60 -1 O ALA A 58 N GLY A 43 SHEET 6 AA1 8 LYS A 91 PRO A 96 1 O CYS A 94 N LEU A 59 SHEET 7 AA1 8 LEU A 71 ASP A 84 -1 N PHE A 80 O LYS A 91 SHEET 8 AA1 8 VAL A 135 ASP A 142 -1 O VAL A 141 N MET A 79 SHEET 1 AA2 2 ASN A 15 VAL A 19 0 SHEET 2 AA2 2 VAL A 26 TYR A 31 -1 O ARG A 27 N GLU A 18 LINK OE2 GLU A 18 CA CA A 204 1555 1555 2.33 LINK OD2 ASP A 29 CA CA A 204 1555 1555 3.18 LINK O LYS A 127 CA CA A 205 1555 1555 2.78 LINK O ASP A 128 CA CA A 205 1555 1555 3.20 LINK O GLU A 130 CA CA A 205 1555 1555 2.35 LINK O LYS A 133 CA CA A 205 1555 1555 2.34 LINK CA CA A 203 O HOH A 305 1555 1555 2.31 LINK CA CA A 203 O HOH A 314 1555 1555 2.33 LINK CA CA A 203 O HOH A 327 1555 1555 2.32 LINK CA CA A 204 O HOH A 321 1555 1555 2.32 LINK CA CA A 204 O HOH A 324 1555 1555 2.32 LINK CA CA A 205 O HOH A 326 1555 1555 2.33 SITE 1 AC1 11 LYS A 16 TYR A 42 ASP A 89 LYS A 91 SITE 2 AC1 11 TYR A 126 LYS A 127 PO4 A 202 HOH A 303 SITE 3 AC1 11 HOH A 305 HOH A 306 HOH A 315 SITE 1 AC2 8 LYS A 16 ARG A 30 GLU A 85 LYS A 127 SITE 2 AC2 8 LYS A 133 PO4 A 201 HOH A 321 HOH A 324 SITE 1 AC3 5 GLU A 8 ASP A 57 HOH A 305 HOH A 314 SITE 2 AC3 5 HOH A 327 SITE 1 AC4 4 GLU A 18 ASP A 29 HOH A 321 HOH A 324 SITE 1 AC5 5 LYS A 127 ASP A 128 GLU A 130 LYS A 133 SITE 2 AC5 5 HOH A 326 CRYST1 99.319 99.319 96.732 90.00 90.00 120.00 P 63 2 2 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.010069 0.005813 0.000000 0.00000 SCALE2 0.000000 0.011626 0.000000 0.00000 SCALE3 0.000000 0.000000 0.010338 0.00000