HEADER HYDROLASE 07-APR-15 4Z7R TITLE THE 1.98-ANGSTROM CRYSTAL STRUCTURE OF ZN(2+)-BOUND PQQB FROM TITLE 2 METHYLOBACTERIUM EXTORQUENS COMPND MOL_ID: 1; COMPND 2 MOLECULE: COENZYME PQQ SYNTHESIS PROTEIN B; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: COENZYME PQQ SYNTHESIS PROTEIN G,PYRROLOQUINOLINE QUINONE COMPND 5 BIOSYNTHESIS PROTEIN B; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: METHYLOBACTERIUM EXTORQUENS (STRAIN ATCC 14718 SOURCE 3 / DSM 1338 / AM1); SOURCE 4 ORGANISM_TAXID: 272630; SOURCE 5 STRAIN: ATCC 14718 / DSM 1338 / AM1; SOURCE 6 GENE: PQQB, PQQG, MEXAM1_META1P1750; SOURCE 7 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 8 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 9 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 10 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID KEYWDS PQQB, PQQ, PYRROLOQUINOLINE QUINONE, PYRROLOQUINOLINE QUINONE B, KEYWDS 2 METALLO-BETA-LACTAMASE, BETA-LACTAMASE, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR X.TU,C.M.WILMOT REVDAT 2 06-MAR-24 4Z7R 1 REMARK LINK REVDAT 1 20-APR-16 4Z7R 0 JRNL AUTH X.TU,C.M.WIMOT JRNL TITL CRYSTAL STRUCTURES REVEAL METAL-BINDING PLASTICITY AT ACTIVE JRNL TITL 2 SITE OF PQQB JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.98 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.98 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 21.79 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.4 REMARK 3 NUMBER OF REFLECTIONS : 38914 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.177 REMARK 3 R VALUE (WORKING SET) : 0.175 REMARK 3 FREE R VALUE : 0.221 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.030 REMARK 3 FREE R VALUE TEST SET COUNT : 1956 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 21.7892 - 4.7615 0.99 2714 157 0.1664 0.1962 REMARK 3 2 4.7615 - 3.7858 1.00 2663 146 0.1479 0.1854 REMARK 3 3 3.7858 - 3.3091 1.00 2703 122 0.1585 0.2017 REMARK 3 4 3.3091 - 3.0074 1.00 2652 129 0.1724 0.2219 REMARK 3 5 3.0074 - 2.7923 1.00 2700 139 0.1751 0.2504 REMARK 3 6 2.7923 - 2.6280 1.00 2628 139 0.1732 0.2238 REMARK 3 7 2.6280 - 2.4966 1.00 2633 145 0.1752 0.2284 REMARK 3 8 2.4966 - 2.3880 1.00 2637 132 0.1799 0.2712 REMARK 3 9 2.3880 - 2.2962 1.00 2674 134 0.1855 0.2304 REMARK 3 10 2.2962 - 2.2171 1.00 2612 144 0.1882 0.2264 REMARK 3 11 2.2171 - 2.1478 1.00 2636 130 0.1992 0.2670 REMARK 3 12 2.1478 - 2.0864 0.99 2616 137 0.2050 0.2196 REMARK 3 13 2.0864 - 2.0316 0.99 2618 146 0.2111 0.2467 REMARK 3 14 2.0316 - 1.9820 0.95 2472 156 0.2180 0.2627 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.200 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 21.470 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 15.52 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 15.85 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.003 4445 REMARK 3 ANGLE : 0.794 6051 REMARK 3 CHIRALITY : 0.030 702 REMARK 3 PLANARITY : 0.003 794 REMARK 3 DIHEDRAL : 12.413 1611 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 5 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 1 THROUGH 164 ) REMARK 3 ORIGIN FOR THE GROUP (A): 51.2303 -1.2897 21.4093 REMARK 3 T TENSOR REMARK 3 T11: 0.0854 T22: 0.0949 REMARK 3 T33: 0.0949 T12: 0.0036 REMARK 3 T13: -0.0031 T23: 0.0004 REMARK 3 L TENSOR REMARK 3 L11: 0.0964 L22: 0.1267 REMARK 3 L33: 0.2297 L12: -0.0203 REMARK 3 L13: -0.0589 L23: -0.1388 REMARK 3 S TENSOR REMARK 3 S11: -0.0110 S12: 0.0252 S13: 0.0026 REMARK 3 S21: 0.0286 S22: 0.0218 S23: -0.0221 REMARK 3 S31: -0.0457 S32: -0.0214 S33: -0.0002 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 165 THROUGH 193 ) REMARK 3 ORIGIN FOR THE GROUP (A): 46.4176 -1.4485 7.4624 REMARK 3 T TENSOR REMARK 3 T11: 0.1502 T22: 0.1668 REMARK 3 T33: 0.1557 T12: -0.0041 REMARK 3 T13: -0.0069 T23: 0.0078 REMARK 3 L TENSOR REMARK 3 L11: 0.0156 L22: 0.0285 REMARK 3 L33: 0.0113 L12: -0.0232 REMARK 3 L13: -0.0041 L23: 0.0079 REMARK 3 S TENSOR REMARK 3 S11: -0.0021 S12: 0.0397 S13: -0.0441 REMARK 3 S21: -0.0224 S22: 0.0258 S23: 0.0464 REMARK 3 S31: -0.0734 S32: -0.1230 S33: 0.0000 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 194 THROUGH 299 ) REMARK 3 ORIGIN FOR THE GROUP (A): 58.7826 -9.0916 4.6548 REMARK 3 T TENSOR REMARK 3 T11: 0.0694 T22: 0.1177 REMARK 3 T33: 0.1104 T12: -0.0128 REMARK 3 T13: 0.0081 T23: -0.0005 REMARK 3 L TENSOR REMARK 3 L11: 0.0522 L22: 0.0124 REMARK 3 L33: 0.1182 L12: 0.0199 REMARK 3 L13: -0.0526 L23: -0.0485 REMARK 3 S TENSOR REMARK 3 S11: 0.0028 S12: 0.0280 S13: -0.0074 REMARK 3 S21: -0.0665 S22: 0.0322 S23: -0.0093 REMARK 3 S31: 0.0279 S32: 0.0092 S33: 0.0641 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 1 THROUGH 207 ) REMARK 3 ORIGIN FOR THE GROUP (A): 49.4431 -18.3609 38.3501 REMARK 3 T TENSOR REMARK 3 T11: 0.0948 T22: 0.0819 REMARK 3 T33: 0.0862 T12: 0.0087 REMARK 3 T13: 0.0102 T23: 0.0092 REMARK 3 L TENSOR REMARK 3 L11: 0.1285 L22: 0.2413 REMARK 3 L33: 0.3362 L12: 0.1465 REMARK 3 L13: 0.0810 L23: -0.1145 REMARK 3 S TENSOR REMARK 3 S11: -0.0135 S12: 0.0036 S13: -0.0226 REMARK 3 S21: 0.0697 S22: 0.0314 S23: 0.0264 REMARK 3 S31: 0.0264 S32: -0.0212 S33: 0.0133 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 208 THROUGH 299 ) REMARK 3 ORIGIN FOR THE GROUP (A): 55.2719 -8.3144 53.6374 REMARK 3 T TENSOR REMARK 3 T11: 0.1886 T22: 0.0889 REMARK 3 T33: 0.0946 T12: 0.0259 REMARK 3 T13: -0.0095 T23: 0.0000 REMARK 3 L TENSOR REMARK 3 L11: 0.1274 L22: 0.1003 REMARK 3 L33: 0.1371 L12: 0.1014 REMARK 3 L13: 0.0034 L23: -0.0200 REMARK 3 S TENSOR REMARK 3 S11: 0.0244 S12: -0.0400 S13: 0.0191 REMARK 3 S21: 0.2095 S22: 0.0513 S23: 0.0343 REMARK 3 S31: -0.0463 S32: 0.0281 S33: 0.1343 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : 1 REMARK 3 NCS GROUP : 1 REMARK 3 NCS OPERATOR : 1 REMARK 3 REFERENCE SELECTION: CHAIN A AND SEGID A REMARK 3 SELECTION : CHAIN B AND SEGID B REMARK 3 ATOM PAIRS NUMBER : 2512 REMARK 3 RMSD : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4Z7R COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 08-APR-15. REMARK 100 THE DEPOSITION ID IS D_1000208776. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 22-FEB-14 REMARK 200 TEMPERATURE (KELVIN) : 108 REMARK 200 PH : 6.7 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 19-BM REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.979 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 210R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-3000 REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 38935 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.980 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.4 REMARK 200 DATA REDUNDANCY : 3.000 REMARK 200 R MERGE (I) : 0.11500 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 9.3000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.98 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.01 REMARK 200 COMPLETENESS FOR SHELL (%) : 96.9 REMARK 200 DATA REDUNDANCY IN SHELL : 2.10 REMARK 200 R MERGE FOR SHELL (I) : 0.45000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER 2.5.1 REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 44.10 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.20 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 20% PEG8000, 0.2M NACL, BIS-TRIS REMARK 280 PROPANE PH7.0, PH 6.7, VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 25.99550 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 4390 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 20680 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -82.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY B 158 REMARK 465 LYS B 159 REMARK 465 VAL B 160 REMARK 465 PRO B 161 REMARK 465 LEU B 162 REMARK 465 TRP B 163 REMARK 465 LEU B 164 REMARK 465 GLU B 165 REMARK 465 ASP B 166 REMARK 465 ALA B 167 REMARK 465 SER B 168 REMARK 465 MET B 169 REMARK 465 GLU B 170 REMARK 465 ILE B 171 REMARK 465 GLY B 172 REMARK 465 ALA B 173 REMARK 465 GLU B 174 REMARK 465 THR B 175 REMARK 465 GLU B 176 REMARK 465 THR B 177 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER A 40 112.77 -39.21 REMARK 500 ASN A 55 152.62 70.86 REMARK 500 VAL A 131 -50.96 -125.66 REMARK 500 ASP A 216 112.74 -37.21 REMARK 500 SER B 40 124.49 -34.33 REMARK 500 SER B 41 143.91 -174.49 REMARK 500 ASN B 55 150.67 68.18 REMARK 500 VAL B 131 -50.93 -124.81 REMARK 500 ASP B 216 113.08 -38.21 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 301 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 19 SG REMARK 620 2 CYS A 21 SG 112.0 REMARK 620 3 CYS A 24 SG 113.0 115.5 REMARK 620 4 ASN A 268 OD1 106.2 106.2 102.9 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 302 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 92 OD2 REMARK 620 2 HIS A 265 NE2 110.8 REMARK 620 3 HOH A 429 O 115.5 100.4 REMARK 620 4 HOH A 502 O 94.7 98.0 135.5 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN B 301 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS B 19 SG REMARK 620 2 CYS B 21 SG 112.0 REMARK 620 3 CYS B 24 SG 113.7 115.3 REMARK 620 4 ASN B 268 OD1 103.2 107.0 104.3 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN B 302 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP B 92 OD2 REMARK 620 2 HIS B 265 NE2 125.9 REMARK 620 N 1 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN A 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN A 302 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN B 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN B 302 DBREF 4Z7R A 1 299 UNP Q49149 PQQB_METEA 1 299 DBREF 4Z7R B 1 299 UNP Q49149 PQQB_METEA 1 299 SEQRES 1 A 299 MET HIS VAL VAL ILE LEU GLY SER ALA ALA GLY GLY GLY SEQRES 2 A 299 VAL PRO GLN TRP ASN CYS ARG CYS SER ILE CYS SER LEU SEQRES 3 A 299 ALA TRP ALA GLY ASP SER ARG VAL ARG PRO ARG THR GLN SEQRES 4 A 299 SER SER ILE ALA VAL SER PRO ASP GLY GLU ARG TRP LEU SEQRES 5 A 299 LEU LEU ASN ALA SER PRO ASP ILE ARG GLN GLN ILE GLN SEQRES 6 A 299 ALA ASN PRO GLN MET HIS PRO ARG GLU GLY LEU ARG HIS SEQRES 7 A 299 SER PRO ILE HIS ALA VAL LEU LEU THR ASN GLY ASP VAL SEQRES 8 A 299 ASP HIS VAL ALA GLY LEU LEU THR LEU ARG GLU GLY GLN SEQRES 9 A 299 PRO PHE THR LEU TYR ALA THR PRO GLY ILE LEU ALA SER SEQRES 10 A 299 VAL SER ASP ASN ARG VAL PHE ASP VAL MET ALA ALA ASP SEQRES 11 A 299 VAL VAL LYS ARG GLN THR ILE ALA LEU ASN GLU THR PHE SEQRES 12 A 299 GLU PRO VAL PRO GLY LEU SER VAL THR LEU PHE SER VAL SEQRES 13 A 299 PRO GLY LYS VAL PRO LEU TRP LEU GLU ASP ALA SER MET SEQRES 14 A 299 GLU ILE GLY ALA GLU THR GLU THR THR VAL GLY THR MET SEQRES 15 A 299 ILE GLU ALA GLY GLY LYS ARG LEU ALA TYR ILE PRO GLY SEQRES 16 A 299 CYS ALA ARG VAL THR GLU ASP LEU LYS ALA ARG ILE ALA SEQRES 17 A 299 GLY ALA ASP ALA LEU LEU PHE ASP GLY THR VAL LEU GLU SEQRES 18 A 299 ASP ASP ASP MET ILE ARG ALA GLY VAL GLY THR LYS THR SEQRES 19 A 299 GLY TRP ARG MET GLY HIS ILE GLN MET ASN GLY GLU THR SEQRES 20 A 299 GLY SER ILE ALA SER LEU ALA ASP ILE GLU ILE GLY ARG SEQRES 21 A 299 ARG VAL PHE VAL HIS ILE ASN ASN THR ASN PRO VAL LEU SEQRES 22 A 299 ILE GLU ASP SER TYR GLU ARG ALA SER VAL GLU ALA ARG SEQRES 23 A 299 GLY TRP THR VAL ALA HIS ASP GLY LEU THR LEU ASP LEU SEQRES 1 B 299 MET HIS VAL VAL ILE LEU GLY SER ALA ALA GLY GLY GLY SEQRES 2 B 299 VAL PRO GLN TRP ASN CYS ARG CYS SER ILE CYS SER LEU SEQRES 3 B 299 ALA TRP ALA GLY ASP SER ARG VAL ARG PRO ARG THR GLN SEQRES 4 B 299 SER SER ILE ALA VAL SER PRO ASP GLY GLU ARG TRP LEU SEQRES 5 B 299 LEU LEU ASN ALA SER PRO ASP ILE ARG GLN GLN ILE GLN SEQRES 6 B 299 ALA ASN PRO GLN MET HIS PRO ARG GLU GLY LEU ARG HIS SEQRES 7 B 299 SER PRO ILE HIS ALA VAL LEU LEU THR ASN GLY ASP VAL SEQRES 8 B 299 ASP HIS VAL ALA GLY LEU LEU THR LEU ARG GLU GLY GLN SEQRES 9 B 299 PRO PHE THR LEU TYR ALA THR PRO GLY ILE LEU ALA SER SEQRES 10 B 299 VAL SER ASP ASN ARG VAL PHE ASP VAL MET ALA ALA ASP SEQRES 11 B 299 VAL VAL LYS ARG GLN THR ILE ALA LEU ASN GLU THR PHE SEQRES 12 B 299 GLU PRO VAL PRO GLY LEU SER VAL THR LEU PHE SER VAL SEQRES 13 B 299 PRO GLY LYS VAL PRO LEU TRP LEU GLU ASP ALA SER MET SEQRES 14 B 299 GLU ILE GLY ALA GLU THR GLU THR THR VAL GLY THR MET SEQRES 15 B 299 ILE GLU ALA GLY GLY LYS ARG LEU ALA TYR ILE PRO GLY SEQRES 16 B 299 CYS ALA ARG VAL THR GLU ASP LEU LYS ALA ARG ILE ALA SEQRES 17 B 299 GLY ALA ASP ALA LEU LEU PHE ASP GLY THR VAL LEU GLU SEQRES 18 B 299 ASP ASP ASP MET ILE ARG ALA GLY VAL GLY THR LYS THR SEQRES 19 B 299 GLY TRP ARG MET GLY HIS ILE GLN MET ASN GLY GLU THR SEQRES 20 B 299 GLY SER ILE ALA SER LEU ALA ASP ILE GLU ILE GLY ARG SEQRES 21 B 299 ARG VAL PHE VAL HIS ILE ASN ASN THR ASN PRO VAL LEU SEQRES 22 B 299 ILE GLU ASP SER TYR GLU ARG ALA SER VAL GLU ALA ARG SEQRES 23 B 299 GLY TRP THR VAL ALA HIS ASP GLY LEU THR LEU ASP LEU HET ZN A 301 1 HET ZN A 302 1 HET ZN B 301 1 HET ZN B 302 1 HETNAM ZN ZINC ION FORMUL 3 ZN 4(ZN 2+) FORMUL 7 HOH *235(H2 O) HELIX 1 AA1 CYS A 21 GLY A 30 1 10 HELIX 2 AA2 ASP A 59 ASN A 67 1 9 HELIX 3 AA3 PRO A 68 HIS A 71 5 4 HELIX 4 AA4 ASP A 90 ALA A 95 1 6 HELIX 5 AA5 GLY A 96 THR A 99 5 4 HELIX 6 AA6 THR A 111 ASP A 120 1 10 HELIX 7 AA7 ASN A 121 MET A 127 5 7 HELIX 8 AA8 PRO A 161 GLU A 165 5 5 HELIX 9 AA9 THR A 200 ALA A 208 1 9 HELIX 10 AB1 ASP A 223 ALA A 228 1 6 HELIX 11 AB2 THR A 234 GLY A 239 1 6 HELIX 12 AB3 GLY A 248 LEU A 253 1 6 HELIX 13 AB4 ASN A 270 ILE A 274 5 5 HELIX 14 AB5 SER A 277 ARG A 286 1 10 HELIX 15 AB6 CYS B 21 ALA B 29 1 9 HELIX 16 AB7 ASP B 59 ASN B 67 1 9 HELIX 17 AB8 PRO B 68 HIS B 71 5 4 HELIX 18 AB9 ASP B 90 ALA B 95 1 6 HELIX 19 AC1 GLY B 96 THR B 99 5 4 HELIX 20 AC2 THR B 111 ASP B 120 1 10 HELIX 21 AC3 ASN B 121 MET B 127 5 7 HELIX 22 AC4 THR B 200 ALA B 208 1 9 HELIX 23 AC5 ASP B 223 ALA B 228 1 6 HELIX 24 AC6 THR B 234 GLY B 239 1 6 HELIX 25 AC7 GLY B 248 LEU B 253 1 6 HELIX 26 AC8 ASN B 270 ILE B 274 5 5 HELIX 27 AC9 SER B 277 ARG B 286 1 10 SHEET 1 AA1 7 VAL A 132 THR A 136 0 SHEET 2 AA1 7 PHE A 106 ALA A 110 1 N LEU A 108 O LYS A 133 SHEET 3 AA1 7 ILE A 81 LEU A 85 1 N VAL A 84 O TYR A 109 SHEET 4 AA1 7 TRP A 51 LEU A 54 1 N LEU A 53 O ALA A 83 SHEET 5 AA1 7 SER A 41 SER A 45 -1 N ILE A 42 O LEU A 54 SHEET 6 AA1 7 HIS A 2 GLY A 7 -1 N HIS A 2 O SER A 45 SHEET 7 AA1 7 THR A 296 ASP A 298 -1 O LEU A 297 N VAL A 3 SHEET 1 AA2 7 THR A 142 VAL A 146 0 SHEET 2 AA2 7 LEU A 149 SER A 155 -1 O VAL A 151 N PHE A 143 SHEET 3 AA2 7 VAL A 179 ALA A 185 -1 O GLY A 180 N PHE A 154 SHEET 4 AA2 7 LYS A 188 ILE A 193 -1 O LEU A 190 N ILE A 183 SHEET 5 AA2 7 ALA A 212 ASP A 216 1 O LEU A 214 N ALA A 191 SHEET 6 AA2 7 ARG A 260 VAL A 264 1 O ARG A 260 N LEU A 213 SHEET 7 AA2 7 TRP A 288 VAL A 290 1 O THR A 289 N PHE A 263 SHEET 1 AA3 2 GLY A 158 LYS A 159 0 SHEET 2 AA3 2 ILE A 171 ALA A 173 -1 O GLY A 172 N GLY A 158 SHEET 1 AA4 7 VAL B 132 THR B 136 0 SHEET 2 AA4 7 PHE B 106 ALA B 110 1 N LEU B 108 O LYS B 133 SHEET 3 AA4 7 ILE B 81 LEU B 85 1 N VAL B 84 O TYR B 109 SHEET 4 AA4 7 TRP B 51 LEU B 54 1 N LEU B 53 O LEU B 85 SHEET 5 AA4 7 SER B 41 SER B 45 -1 N ILE B 42 O LEU B 54 SHEET 6 AA4 7 HIS B 2 GLY B 7 -1 N HIS B 2 O SER B 45 SHEET 7 AA4 7 THR B 296 ASP B 298 -1 O LEU B 297 N VAL B 3 SHEET 1 AA5 7 THR B 142 VAL B 146 0 SHEET 2 AA5 7 LEU B 149 SER B 155 -1 O VAL B 151 N PHE B 143 SHEET 3 AA5 7 VAL B 179 ALA B 185 -1 O GLY B 180 N PHE B 154 SHEET 4 AA5 7 LYS B 188 ILE B 193 -1 O TYR B 192 N THR B 181 SHEET 5 AA5 7 ALA B 212 ASP B 216 1 O LEU B 214 N ILE B 193 SHEET 6 AA5 7 ARG B 261 VAL B 264 1 O VAL B 262 N LEU B 213 SHEET 7 AA5 7 TRP B 288 VAL B 290 1 O THR B 289 N ARG B 261 LINK SG CYS A 19 ZN ZN A 301 1555 1555 2.31 LINK SG CYS A 21 ZN ZN A 301 1555 1555 2.35 LINK SG CYS A 24 ZN ZN A 301 1555 1555 2.36 LINK OD2 ASP A 92 ZN ZN A 302 1555 1555 2.09 LINK NE2 HIS A 265 ZN ZN A 302 1555 1555 2.11 LINK OD1 ASN A 268 ZN ZN A 301 1555 1555 2.09 LINK ZN ZN A 302 O HOH A 429 1555 1555 2.03 LINK ZN ZN A 302 O HOH A 502 1555 1555 2.27 LINK SG CYS B 19 ZN ZN B 301 1555 1555 2.35 LINK SG CYS B 21 ZN ZN B 301 1555 1555 2.40 LINK SG CYS B 24 ZN ZN B 301 1555 1555 2.32 LINK OD2 ASP B 92 ZN ZN B 302 1555 1555 2.49 LINK NE2 HIS B 265 ZN ZN B 302 1555 1555 2.65 LINK OD1 ASN B 268 ZN ZN B 301 1555 1555 2.08 CISPEP 1 VAL A 14 PRO A 15 0 -2.68 CISPEP 2 VAL B 14 PRO B 15 0 -3.31 SITE 1 AC1 4 CYS A 19 CYS A 21 CYS A 24 ASN A 268 SITE 1 AC2 4 ASP A 92 HIS A 265 HOH A 429 HOH A 502 SITE 1 AC3 4 CYS B 19 CYS B 21 CYS B 24 ASN B 268 SITE 1 AC4 3 ASP B 92 HIS B 265 HOH B 492 CRYST1 45.431 51.991 120.536 90.00 95.49 90.00 P 1 21 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.022011 0.000000 0.002114 0.00000 SCALE2 0.000000 0.019234 0.000000 0.00000 SCALE3 0.000000 0.000000 0.008334 0.00000