HEADER OXIDOREDUCTASE 08-APR-15 4Z7X TITLE MDBA PROTEIN, A THIOL-DISULFIDE OXIDOREDUCTASE FROM ACTINOMYCES ORIS. COMPND MOL_ID: 1; COMPND 2 MOLECULE: MDBA; COMPND 3 CHAIN: A, B; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ACTINOMYCES ORIS; SOURCE 3 ORGANISM_TAXID: 544580; SOURCE 4 GENE: MDBA, ANA_1994; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PMCSG7 KEYWDS THIOL-DISULFIDE OXIDOREDUCTASE, STRUCTURAL GENOMICS, MIDWEST CENTER KEYWDS 2 FOR STRUCTURAL GENOMICS, MCSG, PSI-BIOLOGY, OXIDOREDUCTASE EXPDTA X-RAY DIFFRACTION AUTHOR J.OSIPIUK,M.E.REARDON-ROBINSON,H.TON-THAT,A.JOACHIMIAK,MIDWEST CENTER AUTHOR 2 FOR STRUCTURAL GENOMICS (MCSG) REVDAT 4 11-DEC-19 4Z7X 1 REMARK REVDAT 3 20-SEP-17 4Z7X 1 JRNL REMARK REVDAT 2 09-SEP-15 4Z7X 1 JRNL REVDAT 1 22-APR-15 4Z7X 0 JRNL AUTH M.E.REARDON-ROBINSON,J.OSIPIUK,C.CHANG,C.WU,N.JOOYA, JRNL AUTH 2 A.JOACHIMIAK,A.DAS,H.TON-THAT JRNL TITL A DISULFIDE BOND-FORMING MACHINE IS LINKED TO THE JRNL TITL 2 SORTASE-MEDIATED PILUS ASSEMBLY PATHWAY IN THE GRAM-POSITIVE JRNL TITL 3 BACTERIUM ACTINOMYCES ORIS. JRNL REF J.BIOL.CHEM. V. 290 21393 2015 JRNL REFN ESSN 1083-351X JRNL PMID 26170452 JRNL DOI 10.1074/JBC.M115.672253 REMARK 2 REMARK 2 RESOLUTION. 1.55 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0073 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.55 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 38.40 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 3 NUMBER OF REFLECTIONS : 56424 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.127 REMARK 3 R VALUE (WORKING SET) : 0.124 REMARK 3 FREE R VALUE : 0.180 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 2954 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.55 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.59 REMARK 3 REFLECTION IN BIN (WORKING SET) : 4028 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 96.54 REMARK 3 BIN R VALUE (WORKING SET) : 0.1810 REMARK 3 BIN FREE R VALUE SET COUNT : 213 REMARK 3 BIN FREE R VALUE : 0.2490 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3175 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 30 REMARK 3 SOLVENT ATOMS : 451 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 21.32 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.56000 REMARK 3 B22 (A**2) : -0.02000 REMARK 3 B33 (A**2) : -0.54000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.083 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.074 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.049 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 2.988 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.978 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.962 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3539 ; 0.013 ; 0.020 REMARK 3 BOND LENGTHS OTHERS (A): 3432 ; 0.001 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 4848 ; 1.610 ; 1.975 REMARK 3 BOND ANGLES OTHERS (DEGREES): 8024 ; 0.885 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 497 ; 5.425 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 150 ;37.821 ;26.867 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 622 ;13.549 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 2 ;22.685 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 555 ; 0.102 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 4062 ; 0.007 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 752 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1759 ; 2.980 ; 1.788 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 1758 ; 2.979 ; 1.786 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2213 ; 3.782 ; 2.687 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): 6971 ; 3.048 ; 3.000 REMARK 3 SPHERICITY; FREE ATOMS (A**2): 109 ;34.141 ; 5.000 REMARK 3 SPHERICITY; BONDED ATOMS (A**2): 7207 ;13.785 ; 5.000 REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS U VALUES : REFINED INDIVIDUALLY REMARK 4 REMARK 4 4Z7X COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 08-APR-15. REMARK 100 THE DEPOSITION ID IS D_1000208778. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 02-AUG-14 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 9.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 19-ID REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9792 REMARK 200 MONOCHROMATOR : DOUBLE CRYSTAL MONOCHROMATOR REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-3000 REMARK 200 DATA SCALING SOFTWARE : HKL-3000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 59458 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.550 REMARK 200 RESOLUTION RANGE LOW (A) : 38.400 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 6.300 REMARK 200 R MERGE (I) : 0.10000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 9.1000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.55 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.58 REMARK 200 COMPLETENESS FOR SHELL (%) : 98.4 REMARK 200 DATA REDUNDANCY IN SHELL : 4.10 REMARK 200 R MERGE FOR SHELL (I) : 0.60600 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: HKL-3000 REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 37.57 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 1.97 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 37.1 PEG 8000, 0.04 M SODIUM IODIDE, REMARK 280 0.15 M CAPSO BUFFER, PH 9.5, VAPOR DIFFUSION, SITTING DROP, REMARK 280 TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 2 2 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -X,Y,-Z+1/2 REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 128.08450 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 128.08450 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 23.44000 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 33.43000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 23.44000 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 33.43000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 128.08450 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 23.44000 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 33.43000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 128.08450 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 23.44000 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 33.43000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 SER A 73 REMARK 465 ASN A 74 REMARK 465 ALA A 75 REMARK 465 ASP A 76 REMARK 465 ALA A 77 REMARK 465 LYS A 78 REMARK 465 LYS A 79 REMARK 465 ASN A 80 REMARK 465 PRO A 81 REMARK 465 LYS A 82 REMARK 465 SER A 83 REMARK 465 SER A 84 REMARK 465 LYS A 85 REMARK 465 THR A 297 REMARK 465 PRO A 298 REMARK 465 THR A 299 REMARK 465 ALA A 300 REMARK 465 GLN A 301 REMARK 465 PRO A 302 REMARK 465 SER A 303 REMARK 465 PRO A 304 REMARK 465 GLN A 305 REMARK 465 PRO A 306 REMARK 465 THR A 307 REMARK 465 GLN A 308 REMARK 465 GLN A 309 REMARK 465 GLY A 310 REMARK 465 SER B 73 REMARK 465 ASN B 74 REMARK 465 ALA B 75 REMARK 465 ASP B 76 REMARK 465 ALA B 77 REMARK 465 LYS B 78 REMARK 465 LYS B 79 REMARK 465 ASN B 80 REMARK 465 PRO B 81 REMARK 465 LYS B 82 REMARK 465 ALA B 94 REMARK 465 THR B 95 REMARK 465 ALA B 119 REMARK 465 ALA B 120 REMARK 465 LEU B 121 REMARK 465 ASP B 122 REMARK 465 THR B 123 REMARK 465 VAL B 124 REMARK 465 ALA B 125 REMARK 465 ALA B 126 REMARK 465 GLN B 301 REMARK 465 PRO B 302 REMARK 465 SER B 303 REMARK 465 PRO B 304 REMARK 465 GLN B 305 REMARK 465 PRO B 306 REMARK 465 THR B 307 REMARK 465 GLN B 308 REMARK 465 GLN B 309 REMARK 465 GLY B 310 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH B 667 O HOH B 689 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 MSE B 218 CG - SE - CE ANGL. DEV. = 13.4 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ALA A 94 20.14 -140.77 REMARK 500 ALA A 111 -1.31 78.65 REMARK 500 ALA A 191 54.92 -143.23 REMARK 500 LEU A 283 75.26 -106.43 REMARK 500 ALA B 111 -1.19 78.46 REMARK 500 ALA B 191 54.39 -142.05 REMARK 500 GLN B 284 14.64 -142.10 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 845 DISTANCE = 6.61 ANGSTROMS REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue 3CX A 501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue 3CX B 501 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: MCSG-APC108951 RELATED DB: TARGETTRACK DBREF 4Z7X A 73 310 PDB 4Z7X 4Z7X 73 310 DBREF 4Z7X B 73 310 PDB 4Z7X 4Z7X 73 310 SEQRES 1 A 238 SER ASN ALA ASP ALA LYS LYS ASN PRO LYS SER SER LYS SEQRES 2 A 238 PHE PRO ALA PRO SER GLU GLY LEU ALA THR ALA LYS ALA SEQRES 3 A 238 ASN GLN GLY GLY ILE PRO LYS GLN VAL LEU SER ASP ALA SEQRES 4 A 238 SER TRP THR TYR GLY GLU GLY ALA ALA LEU ASP THR VAL SEQRES 5 A 238 ALA ALA SER ALA PRO VAL LEU ASP ILE TYR PHE ASP TYR SEQRES 6 A 238 SER CYS SER HIS CYS ALA GLN PHE GLU GLY LEU HIS THR SEQRES 7 A 238 GLN GLU ILE ASN GLN LEU LEU SER ASP LYS LYS ILE THR SEQRES 8 A 238 LEU ALA LEU HIS PRO CYS LYS LEU LEU GLN GLN GLU TRP SEQRES 9 A 238 THR SER VAL VAL MSE ASN ALA MSE GLY VAL VAL LEU ASP SEQRES 10 A 238 GLU ALA PRO ALA GLN SER LEU SER PHE HIS ASN ALA ALA SEQRES 11 A 238 PHE GLU ILE PHE SER GLN ALA ILE GLN THR LYS ASN GLN SEQRES 12 A 238 SER ASN MSE THR VAL GLU GLY LEU VAL ALA ALA ALA ALA SEQRES 13 A 238 LYS VAL ASN VAL PRO LYS GLU VAL SER ALA LYS PHE LYS SEQRES 14 A 238 ALA ALA VAL ASP SER ASP LYS TYR GLY LYS TRP VAL LYS SEQRES 15 A 238 LEU GLY ASP GLU ALA PHE LYS ALA ARG GLU LEU GLU GLY SEQRES 16 A 238 THR PRO THR VAL PHE PHE LYS GLY GLU LYS VAL ASP LEU SEQRES 17 A 238 ASN LYS LEU GLN THR PRO THR SER LEU THR GLU LEU VAL SEQRES 18 A 238 THR GLY SER THR PRO THR ALA GLN PRO SER PRO GLN PRO SEQRES 19 A 238 THR GLN GLN GLY SEQRES 1 B 238 SER ASN ALA ASP ALA LYS LYS ASN PRO LYS SER SER LYS SEQRES 2 B 238 PHE PRO ALA PRO SER GLU GLY LEU ALA THR ALA LYS ALA SEQRES 3 B 238 ASN GLN GLY GLY ILE PRO LYS GLN VAL LEU SER ASP ALA SEQRES 4 B 238 SER TRP THR TYR GLY GLU GLY ALA ALA LEU ASP THR VAL SEQRES 5 B 238 ALA ALA SER ALA PRO VAL LEU ASP ILE TYR PHE ASP TYR SEQRES 6 B 238 SER CYS SER HIS CYS ALA GLN PHE GLU GLY LEU HIS THR SEQRES 7 B 238 GLN GLU ILE ASN GLN LEU LEU SER ASP LYS LYS ILE THR SEQRES 8 B 238 LEU ALA LEU HIS PRO CYS LYS LEU LEU GLN GLN GLU TRP SEQRES 9 B 238 THR SER VAL VAL MSE ASN ALA MSE GLY VAL VAL LEU ASP SEQRES 10 B 238 GLU ALA PRO ALA GLN SER LEU SER PHE HIS ASN ALA ALA SEQRES 11 B 238 PHE GLU ILE PHE SER GLN ALA ILE GLN THR LYS ASN GLN SEQRES 12 B 238 SER ASN MSE THR VAL GLU GLY LEU VAL ALA ALA ALA ALA SEQRES 13 B 238 LYS VAL ASN VAL PRO LYS GLU VAL SER ALA LYS PHE LYS SEQRES 14 B 238 ALA ALA VAL ASP SER ASP LYS TYR GLY LYS TRP VAL LYS SEQRES 15 B 238 LEU GLY ASP GLU ALA PHE LYS ALA ARG GLU LEU GLU GLY SEQRES 16 B 238 THR PRO THR VAL PHE PHE LYS GLY GLU LYS VAL ASP LEU SEQRES 17 B 238 ASN LYS LEU GLN THR PRO THR SER LEU THR GLU LEU VAL SEQRES 18 B 238 THR GLY SER THR PRO THR ALA GLN PRO SER PRO GLN PRO SEQRES 19 B 238 THR GLN GLN GLY HET MSE A 181 8 HET MSE A 184 13 HET MSE A 218 8 HET MSE B 181 8 HET MSE B 184 13 HET MSE B 218 8 HET 3CX A 501 15 HET 3CX B 501 15 HETNAM MSE SELENOMETHIONINE HETNAM 3CX (2S)-3-(CYCLOHEXYLAMINO)-2-HYDROXYPROPANE-1-SULFONIC HETNAM 2 3CX ACID FORMUL 1 MSE 6(C5 H11 N O2 SE) FORMUL 3 3CX 2(C9 H19 N O4 S) FORMUL 5 HOH *451(H2 O) HELIX 1 AA1 ALA A 88 GLY A 92 5 5 HELIX 2 AA2 THR A 123 ALA A 128 5 6 HELIX 3 AA3 CYS A 139 ASP A 159 1 21 HELIX 4 AA4 GLN A 174 ALA A 191 1 18 HELIX 5 AA5 GLN A 194 LYS A 213 1 20 HELIX 6 AA6 THR A 219 VAL A 230 1 12 HELIX 7 AA7 PRO A 233 ALA A 238 1 6 HELIX 8 AA8 LYS A 239 ASP A 247 1 9 HELIX 9 AA9 TYR A 249 ARG A 263 1 15 HELIX 10 AB1 ASP A 279 LEU A 283 5 5 HELIX 11 AB2 THR A 287 GLY A 295 1 9 HELIX 12 AB3 ALA B 88 GLY B 92 5 5 HELIX 13 AB4 CYS B 139 ASP B 159 1 21 HELIX 14 AB5 GLN B 174 ALA B 191 1 18 HELIX 15 AB6 GLN B 194 LYS B 213 1 20 HELIX 16 AB7 THR B 219 VAL B 230 1 12 HELIX 17 AB8 PRO B 233 ALA B 238 1 6 HELIX 18 AB9 LYS B 239 ASP B 247 1 9 HELIX 19 AC1 TYR B 249 ARG B 263 1 15 HELIX 20 AC2 ASP B 279 LEU B 283 5 5 HELIX 21 AC3 THR B 287 GLY B 295 1 9 SHEET 1 AA1 5 TRP A 113 TYR A 115 0 SHEET 2 AA1 5 THR A 163 PRO A 168 -1 O LEU A 166 N TRP A 113 SHEET 3 AA1 5 VAL A 130 PHE A 135 1 N ILE A 133 O HIS A 167 SHEET 4 AA1 5 THR A 270 PHE A 273 -1 O THR A 270 N TYR A 134 SHEET 5 AA1 5 GLU A 276 LYS A 277 -1 O GLU A 276 N PHE A 273 SHEET 1 AA2 5 TRP B 113 TYR B 115 0 SHEET 2 AA2 5 THR B 163 PRO B 168 -1 O LEU B 166 N TRP B 113 SHEET 3 AA2 5 VAL B 130 PHE B 135 1 N LEU B 131 O THR B 163 SHEET 4 AA2 5 THR B 270 PHE B 273 -1 O THR B 270 N TYR B 134 SHEET 5 AA2 5 GLU B 276 LYS B 277 -1 O GLU B 276 N PHE B 273 LINK C VAL A 180 N MSE A 181 1555 1555 1.35 LINK C MSE A 181 N ASN A 182 1555 1555 1.32 LINK C ALA A 183 N MSE A 184 1555 1555 1.32 LINK C MSE A 184 N GLY A 185 1555 1555 1.34 LINK C ASN A 217 N MSE A 218 1555 1555 1.33 LINK C MSE A 218 N THR A 219 1555 1555 1.34 LINK C VAL B 180 N MSE B 181 1555 1555 1.34 LINK C MSE B 181 N ASN B 182 1555 1555 1.34 LINK C ALA B 183 N MSE B 184 1555 1555 1.32 LINK C MSE B 184 N GLY B 185 1555 1555 1.33 LINK C ASN B 217 N MSE B 218 1555 1555 1.33 LINK C MSE B 218 N THR B 219 1555 1555 1.32 CISPEP 1 THR A 268 PRO A 269 0 -11.81 CISPEP 2 THR B 268 PRO B 269 0 -7.60 SITE 1 AC1 9 GLN A 106 THR A 114 TYR A 115 GLY A 116 SITE 2 AC1 9 GLU A 117 GLY A 118 PRO A 192 SER A 195 SITE 3 AC1 9 HOH A 662 SITE 1 AC2 9 GLN B 106 THR B 114 TYR B 115 GLY B 116 SITE 2 AC2 9 GLU B 117 GLY B 118 LEU B 188 PRO B 192 SITE 3 AC2 9 SER B 195 CRYST1 46.880 66.860 256.169 90.00 90.00 90.00 C 2 2 21 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.021331 0.000000 0.000000 0.00000 SCALE2 0.000000 0.014957 0.000000 0.00000 SCALE3 0.000000 0.000000 0.003904 0.00000