HEADER TRANSFERASE 08-APR-15 4Z83 TITLE PKAB3 IN COMPLEX WITH PYRROLIDINE INHIBITOR 47A COMPND MOL_ID: 1; COMPND 2 MOLECULE: CAMP-DEPENDENT PROTEIN KINASE CATALYTIC SUBUNIT ALPHA; COMPND 3 CHAIN: E; COMPND 4 SYNONYM: PKA C-ALPHA; COMPND 5 EC: 2.7.11.11; COMPND 6 ENGINEERED: YES; COMPND 7 MUTATION: YES; COMPND 8 MOL_ID: 2; COMPND 9 MOLECULE: CAMP-DEPENDENT PROTEIN KINASE INHIBITOR ALPHA; COMPND 10 CHAIN: I; COMPND 11 SYNONYM: PKI-ALPHA,CAMP-DEPENDENT PROTEIN KINASE INHIBITOR, COMPND 12 MUSCLE/BRAIN ISOFORM; COMPND 13 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: BOS TAURUS; SOURCE 3 ORGANISM_COMMON: BOVINE; SOURCE 4 ORGANISM_TAXID: 9913; SOURCE 5 GENE: PRKACA; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_PLASMID: PT7-7; SOURCE 9 MOL_ID: 2; SOURCE 10 SYNTHETIC: YES; SOURCE 11 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 12 ORGANISM_COMMON: HUMAN; SOURCE 13 ORGANISM_TAXID: 9606 KEYWDS INHIBITOR, PROTEIN KINASE, STRUCTURE-GUIDED, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR B.A.LUND,K.A.ALAM,R.A.ENGH REVDAT 4 13-NOV-24 4Z83 1 REMARK REVDAT 3 10-JAN-24 4Z83 1 REMARK REVDAT 2 27-JAN-16 4Z83 1 JRNL REVDAT 1 02-DEC-15 4Z83 0 JRNL AUTH B.S.LAUBER,L.A.HARDEGGER,A.K.ASRAFUL,B.A.LUND,O.DUMELE, JRNL AUTH 2 M.HARDER,B.KUHN,R.A.ENGH,F.DIEDERICH JRNL TITL ADDRESSING THE GLYCINE-RICH LOOP OF PROTEIN KINASES BY A JRNL TITL 2 MULTI-FACETTED INTERACTION NETWORK: INHIBITION OF PKA AND A JRNL TITL 3 PKB MIMIC. JRNL REF CHEMISTRY V. 22 211 2016 JRNL REFN ISSN 0947-6539 JRNL PMID 26578105 JRNL DOI 10.1002/CHEM.201503552 REMARK 2 REMARK 2 RESOLUTION. 1.80 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.8.4_1496 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.80 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 35.61 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.330 REMARK 3 COMPLETENESS FOR RANGE (%) : 95.8 REMARK 3 NUMBER OF REFLECTIONS : 68972 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.182 REMARK 3 R VALUE (WORKING SET) : 0.180 REMARK 3 FREE R VALUE : 0.218 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.250 REMARK 3 FREE R VALUE TEST SET COUNT : 3620 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 35.6209 - 5.3254 0.87 2277 131 0.1786 0.2244 REMARK 3 2 5.3254 - 4.2291 0.89 2344 129 0.1347 0.1468 REMARK 3 3 4.2291 - 3.6952 0.90 2335 138 0.1351 0.1688 REMARK 3 4 3.6952 - 3.3576 0.92 2424 131 0.1550 0.2054 REMARK 3 5 3.3576 - 3.1171 0.95 2500 122 0.1591 0.1923 REMARK 3 6 3.1171 - 2.9334 0.96 2503 143 0.1633 0.2004 REMARK 3 7 2.9334 - 2.7866 0.97 2558 140 0.1664 0.2157 REMARK 3 8 2.7866 - 2.6653 0.98 2577 148 0.1760 0.2244 REMARK 3 9 2.6653 - 2.5627 0.98 2565 150 0.1699 0.2357 REMARK 3 10 2.5627 - 2.4743 0.99 2576 149 0.1635 0.2115 REMARK 3 11 2.4743 - 2.3970 0.99 2598 139 0.1640 0.2015 REMARK 3 12 2.3970 - 2.3285 0.99 2590 154 0.1689 0.2056 REMARK 3 13 2.3285 - 2.2672 0.99 2631 144 0.1726 0.2173 REMARK 3 14 2.2672 - 2.2119 0.89 2338 128 0.2054 0.2809 REMARK 3 15 2.2119 - 2.1616 0.98 2561 141 0.2135 0.2053 REMARK 3 16 2.1616 - 2.1156 1.00 2554 149 0.1928 0.2201 REMARK 3 17 2.1156 - 2.0733 0.99 2683 123 0.2026 0.2923 REMARK 3 18 2.0733 - 2.0342 0.98 2568 137 0.2240 0.2481 REMARK 3 19 2.0342 - 1.9978 1.00 2575 159 0.2243 0.2484 REMARK 3 20 1.9978 - 1.9640 1.00 2640 131 0.2455 0.2901 REMARK 3 21 1.9640 - 1.9323 0.98 2554 153 0.2897 0.3373 REMARK 3 22 1.9323 - 1.9026 0.91 2402 138 0.3175 0.3460 REMARK 3 23 1.9026 - 1.8746 0.98 2534 126 0.3330 0.3153 REMARK 3 24 1.8746 - 1.8482 0.99 2637 155 0.3274 0.3850 REMARK 3 25 1.8482 - 1.8232 0.99 2580 133 0.3552 0.3354 REMARK 3 26 1.8232 - 1.7995 0.85 2248 129 0.3203 0.3792 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.250 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 22.090 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.026 2996 REMARK 3 ANGLE : 1.013 4055 REMARK 3 CHIRALITY : 0.038 426 REMARK 3 PLANARITY : 0.007 545 REMARK 3 DIHEDRAL : 12.336 1113 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 12 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'E' AND (RESID 14 THROUGH 54 ) REMARK 3 ORIGIN FOR THE GROUP (A): -3.7919 -12.7561 -5.1847 REMARK 3 T TENSOR REMARK 3 T11: 0.2131 T22: 0.2928 REMARK 3 T33: 0.2841 T12: 0.0685 REMARK 3 T13: 0.0222 T23: 0.0227 REMARK 3 L TENSOR REMARK 3 L11: 1.2457 L22: 1.4513 REMARK 3 L33: 1.8309 L12: -0.2918 REMARK 3 L13: -0.6978 L23: 0.8480 REMARK 3 S TENSOR REMARK 3 S11: -0.1966 S12: -0.0495 S13: -0.2463 REMARK 3 S21: -0.1362 S22: 0.0391 S23: -0.3332 REMARK 3 S31: 0.3644 S32: 0.3978 S33: 0.0519 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'E' AND (RESID 55 THROUGH 81 ) REMARK 3 ORIGIN FOR THE GROUP (A): -9.1991 -20.4054 4.1462 REMARK 3 T TENSOR REMARK 3 T11: 0.4073 T22: 0.2625 REMARK 3 T33: 0.3448 T12: 0.1272 REMARK 3 T13: 0.0388 T23: 0.0689 REMARK 3 L TENSOR REMARK 3 L11: 2.1755 L22: 1.6852 REMARK 3 L33: 1.9073 L12: 0.0054 REMARK 3 L13: 0.4094 L23: 0.1407 REMARK 3 S TENSOR REMARK 3 S11: -0.0730 S12: -0.2365 S13: -0.5118 REMARK 3 S21: 0.3226 S22: 0.0822 S23: -0.1727 REMARK 3 S31: 0.7837 S32: 0.2775 S33: 0.0268 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'E' AND (RESID 82 THROUGH 179 ) REMARK 3 ORIGIN FOR THE GROUP (A): -8.5478 -4.5896 1.9666 REMARK 3 T TENSOR REMARK 3 T11: 0.1861 T22: 0.2342 REMARK 3 T33: 0.2056 T12: 0.0160 REMARK 3 T13: -0.0021 T23: 0.0424 REMARK 3 L TENSOR REMARK 3 L11: 0.7145 L22: 1.2266 REMARK 3 L33: 1.4816 L12: -0.0738 REMARK 3 L13: -0.2058 L23: 0.5721 REMARK 3 S TENSOR REMARK 3 S11: -0.0744 S12: -0.0671 S13: -0.0922 REMARK 3 S21: 0.0495 S22: -0.0027 S23: -0.1060 REMARK 3 S31: 0.1591 S32: 0.2499 S33: 0.0682 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'E' AND (RESID 180 THROUGH 198 ) REMARK 3 ORIGIN FOR THE GROUP (A): -15.3184 -2.3949 -7.9210 REMARK 3 T TENSOR REMARK 3 T11: 0.2535 T22: 0.1981 REMARK 3 T33: 0.1891 T12: -0.0210 REMARK 3 T13: -0.0013 T23: 0.0157 REMARK 3 L TENSOR REMARK 3 L11: 2.3224 L22: 1.7088 REMARK 3 L33: 2.0169 L12: -0.1823 REMARK 3 L13: 0.0715 L23: 0.4660 REMARK 3 S TENSOR REMARK 3 S11: 0.0003 S12: 0.1087 S13: -0.0381 REMARK 3 S21: -0.1138 S22: -0.0983 S23: -0.0539 REMARK 3 S31: 0.0239 S32: 0.0975 S33: 0.1224 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'E' AND (RESID 199 THROUGH 233 ) REMARK 3 ORIGIN FOR THE GROUP (A): -19.7058 6.6594 -0.9401 REMARK 3 T TENSOR REMARK 3 T11: 0.1502 T22: 0.1540 REMARK 3 T33: 0.1783 T12: 0.0087 REMARK 3 T13: -0.0275 T23: 0.0257 REMARK 3 L TENSOR REMARK 3 L11: 1.7734 L22: 2.3558 REMARK 3 L33: 2.9970 L12: 0.6883 REMARK 3 L13: -0.1474 L23: 1.3513 REMARK 3 S TENSOR REMARK 3 S11: -0.0128 S12: 0.0157 S13: -0.0162 REMARK 3 S21: -0.0258 S22: -0.0062 S23: 0.1180 REMARK 3 S31: -0.0503 S32: -0.1069 S33: 0.0202 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'E' AND (RESID 234 THROUGH 252 ) REMARK 3 ORIGIN FOR THE GROUP (A): -28.8789 7.5353 6.6205 REMARK 3 T TENSOR REMARK 3 T11: 0.2063 T22: 0.3506 REMARK 3 T33: 0.2786 T12: -0.0086 REMARK 3 T13: 0.0237 T23: -0.0365 REMARK 3 L TENSOR REMARK 3 L11: 3.2681 L22: 3.0009 REMARK 3 L33: 4.4513 L12: 0.2146 REMARK 3 L13: 0.3586 L23: 0.7013 REMARK 3 S TENSOR REMARK 3 S11: -0.0555 S12: -0.1076 S13: -0.1006 REMARK 3 S21: 0.1559 S22: -0.1350 S23: 0.5691 REMARK 3 S31: 0.0911 S32: -0.9422 S33: 0.1532 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'E' AND (RESID 253 THROUGH 279 ) REMARK 3 ORIGIN FOR THE GROUP (A): -17.7724 18.5321 3.9825 REMARK 3 T TENSOR REMARK 3 T11: 0.2527 T22: 0.1848 REMARK 3 T33: 0.2825 T12: -0.0004 REMARK 3 T13: -0.0284 T23: -0.0080 REMARK 3 L TENSOR REMARK 3 L11: 3.1181 L22: 2.6854 REMARK 3 L33: 4.3655 L12: -0.3094 REMARK 3 L13: 0.0639 L23: 0.5868 REMARK 3 S TENSOR REMARK 3 S11: -0.0454 S12: 0.0458 S13: 0.2949 REMARK 3 S21: -0.1175 S22: -0.1053 S23: 0.1822 REMARK 3 S31: -0.5385 S32: -0.1600 S33: 0.0876 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN 'E' AND (RESID 280 THROUGH 307 ) REMARK 3 ORIGIN FOR THE GROUP (A): -3.8066 14.6753 -1.3402 REMARK 3 T TENSOR REMARK 3 T11: 0.2155 T22: 0.2662 REMARK 3 T33: 0.2757 T12: -0.0780 REMARK 3 T13: 0.0085 T23: 0.0371 REMARK 3 L TENSOR REMARK 3 L11: 2.7869 L22: 2.5061 REMARK 3 L33: 1.2041 L12: -0.3728 REMARK 3 L13: -0.6793 L23: 0.8086 REMARK 3 S TENSOR REMARK 3 S11: -0.0236 S12: 0.0239 S13: 0.3761 REMARK 3 S21: -0.2188 S22: 0.0182 S23: -0.4088 REMARK 3 S31: -0.3430 S32: 0.3397 S33: -0.0545 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: CHAIN 'E' AND (RESID 308 THROUGH 327 ) REMARK 3 ORIGIN FOR THE GROUP (A): -0.1050 -3.9528 15.6060 REMARK 3 T TENSOR REMARK 3 T11: 0.3934 T22: 0.5333 REMARK 3 T33: 0.3772 T12: 0.0446 REMARK 3 T13: -0.1106 T23: 0.0559 REMARK 3 L TENSOR REMARK 3 L11: 1.0443 L22: 1.8046 REMARK 3 L33: 0.5473 L12: 0.6047 REMARK 3 L13: -0.5553 L23: 0.2842 REMARK 3 S TENSOR REMARK 3 S11: 0.0878 S12: -0.4723 S13: -0.1898 REMARK 3 S21: 0.9119 S22: -0.1075 S23: -0.6815 REMARK 3 S31: 0.1360 S32: 0.6756 S33: 0.1838 REMARK 3 TLS GROUP : 10 REMARK 3 SELECTION: CHAIN 'E' AND (RESID 328 THROUGH 350 ) REMARK 3 ORIGIN FOR THE GROUP (A): -17.1206 -24.3874 -0.1482 REMARK 3 T TENSOR REMARK 3 T11: 0.4635 T22: 0.2558 REMARK 3 T33: 0.4527 T12: 0.0060 REMARK 3 T13: 0.1315 T23: 0.0273 REMARK 3 L TENSOR REMARK 3 L11: 0.4618 L22: 2.7186 REMARK 3 L33: 0.9279 L12: 0.1445 REMARK 3 L13: 0.1539 L23: 1.1943 REMARK 3 S TENSOR REMARK 3 S11: -0.1623 S12: -0.0645 S13: -0.3729 REMARK 3 S21: 0.2252 S22: -0.1964 S23: 0.3150 REMARK 3 S31: 0.6440 S32: -0.1822 S33: 0.3317 REMARK 3 TLS GROUP : 11 REMARK 3 SELECTION: CHAIN 'I' AND (RESID 1 THROUGH 8 ) REMARK 3 ORIGIN FOR THE GROUP (A): -25.7089 8.2256 19.4900 REMARK 3 T TENSOR REMARK 3 T11: 0.2898 T22: 0.2660 REMARK 3 T33: 0.1853 T12: -0.0140 REMARK 3 T13: -0.0193 T23: 0.0278 REMARK 3 L TENSOR REMARK 3 L11: 2.1036 L22: 5.5062 REMARK 3 L33: 3.2319 L12: -0.3335 REMARK 3 L13: 0.0576 L23: 1.4945 REMARK 3 S TENSOR REMARK 3 S11: -0.1600 S12: 0.0821 S13: 0.2116 REMARK 3 S21: 0.4523 S22: 0.0773 S23: -0.2450 REMARK 3 S31: -0.1044 S32: 0.0048 S33: 0.0544 REMARK 3 TLS GROUP : 12 REMARK 3 SELECTION: CHAIN 'I' AND (RESID 9 THROUGH 20 ) REMARK 3 ORIGIN FOR THE GROUP (A): -24.5927 -3.4436 7.6144 REMARK 3 T TENSOR REMARK 3 T11: 0.3386 T22: 0.2945 REMARK 3 T33: 0.2462 T12: -0.0513 REMARK 3 T13: -0.0155 T23: 0.0012 REMARK 3 L TENSOR REMARK 3 L11: 3.6232 L22: 2.7319 REMARK 3 L33: 3.0591 L12: -1.4438 REMARK 3 L13: -0.8755 L23: -1.1727 REMARK 3 S TENSOR REMARK 3 S11: 0.0908 S12: 0.2876 S13: -0.3231 REMARK 3 S21: -0.3753 S22: 0.0147 S23: 0.1965 REMARK 3 S31: 0.4069 S32: -0.3609 S33: 0.0320 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4Z83 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 08-APR-15. REMARK 100 THE DEPOSITION ID IS D_1000208753. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 24-NOV-12 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7 REMARK 200 NUMBER OF CRYSTALS USED : NULL REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : BESSY REMARK 200 BEAMLINE : 14.1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.918410 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 225 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS NOVEMBER 11, 2013 REMARK 200 DATA SCALING SOFTWARE : NULL REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 37443 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.800 REMARK 200 RESOLUTION RANGE LOW (A) : 35.614 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.6 REMARK 200 DATA REDUNDANCY : 3.900 REMARK 200 R MERGE (I) : 0.08579 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 10.7800 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.80 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.82 REMARK 200 COMPLETENESS FOR SHELL (%) : 0.9 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER 2.5.5 REMARK 200 STARTING MODEL: 1RDQ REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 47.28 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.33 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: THE DROPLETS, CONTAINING 16 MG/ML REMARK 280 PKAB3, 25 MM BIS-TRIS-HCL, PH 7.0, 150 MM KCL, 1.5MM OCTANOYL-N- REMARK 280 METHYLGLUCAMIDE AND 0.8 MM PKI PEPTIDE, WERE EQUILIBRATED REMARK 280 AGAINST 12-26 % (V/V) METHANOL., VAPOR DIFFUSION, SITTING DROP, REMARK 280 TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 41.28750 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 39.47400 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 30.74550 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 39.47400 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 41.28750 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 30.74550 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1900 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 15710 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -3.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: E, I REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY E 1 REMARK 465 ASN E 2 REMARK 465 ALA E 3 REMARK 465 ALA E 4 REMARK 465 ALA E 5 REMARK 465 ALA E 6 REMARK 465 LYS E 7 REMARK 465 LYS E 8 REMARK 465 GLY E 9 REMARK 465 SER E 10 REMARK 465 GLU E 11 REMARK 465 GLN E 12 REMARK 465 GLU E 13 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS E 16 CG CD CE NZ REMARK 470 LYS E 21 CG CD CE NZ REMARK 470 GLU E 24 CD OE1 OE2 REMARK 470 LYS E 81 CD CE NZ REMARK 470 LYS E 83 CE NZ REMARK 470 GLN E 176 CG CD OE1 NE2 REMARK 470 LYS E 254 CE NZ REMARK 470 ARG E 256 CZ NH1 NH2 REMARK 470 LYS E 285 NZ REMARK 470 LYS E 295 CD CE NZ REMARK 470 LYS E 317 CG CD CE NZ REMARK 470 PHE E 318 CG CD1 CD2 CE1 CE2 CZ REMARK 470 LYS E 319 CG CD CE NZ REMARK 470 GLU E 333 CD OE1 OE2 REMARK 470 GLU E 334 CG CD OE1 OE2 REMARK 470 ASN I 16 CG OD1 ND2 REMARK 470 ASP I 20 C O REMARK 480 REMARK 480 ZERO OCCUPANCY ATOM REMARK 480 THE FOLLOWING RESIDUES HAVE ATOMS MODELED WITH ZERO REMARK 480 OCCUPANCY. THE LOCATION AND PROPERTIES OF THESE ATOMS REMARK 480 MAY NOT BE RELIABLE. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 480 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 480 M RES C SSEQI ATOMS REMARK 480 GLN E 177 CD REMARK 480 ARG E 308 CZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 HD21 ASN E 32 O HOH E 514 1.58 REMARK 500 HE1 TRP E 196 O HOH E 516 1.58 REMARK 500 C5 4L7 E 402 O HOH E 681 1.69 REMARK 500 O HOH E 770 O HOH E 810 1.82 REMARK 500 O HOH E 510 O HOH E 743 1.84 REMARK 500 O HOH E 752 O HOH E 792 1.96 REMARK 500 NH2 ARG E 308 O HOH E 501 1.98 REMARK 500 O HOH E 525 O HOH E 629 2.01 REMARK 500 NZ LYS E 279 O HOH E 502 2.02 REMARK 500 O HOH E 511 O HOH E 608 2.07 REMARK 500 O HOH E 595 O HOH E 811 2.10 REMARK 500 NZ LYS E 345 O HOH E 503 2.10 REMARK 500 O HOH E 827 O HOH I 130 2.11 REMARK 500 O HOH E 756 O HOH E 826 2.11 REMARK 500 O HOH E 771 O HOH E 834 2.13 REMARK 500 O HOH E 775 O HOH E 812 2.14 REMARK 500 O HOH E 681 O HOH E 805 2.16 REMARK 500 OG SER E 259 O HOH E 504 2.17 REMARK 500 O HOH E 615 O HOH E 784 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH E 813 O HOH E 832 4445 1.88 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP E 166 47.25 -145.97 REMARK 500 ASP E 184 73.80 52.50 REMARK 500 LEU E 273 49.76 -83.60 REMARK 500 LYS E 319 47.50 -84.76 REMARK 500 HIS I 19 -1.24 -156.56 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH E 841 DISTANCE = 6.15 ANGSTROMS REMARK 525 HOH E 842 DISTANCE = 6.48 ANGSTROMS REMARK 525 HOH E 843 DISTANCE = 6.52 ANGSTROMS REMARK 525 HOH E 844 DISTANCE = 7.29 ANGSTROMS REMARK 525 HOH E 845 DISTANCE = 7.96 ANGSTROMS REMARK 610 REMARK 610 MISSING HETEROATOM REMARK 610 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 610 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 610 I=INSERTION CODE): REMARK 610 M RES C SSEQI REMARK 610 4L7 E 402 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue 4L7 E 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue 4L7 E 402 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1Q61 RELATED DB: PDB REMARK 900 1Q61 CONTAINS THE APO-FORM DBREF 4Z83 E 1 350 UNP P00517 KAPCA_BOVIN 2 351 DBREF 4Z83 I 1 20 UNP P61925 IPKA_HUMAN 6 25 SEQADV 4Z83 ALA E 123 UNP P00517 VAL 124 ENGINEERED MUTATION SEQADV 4Z83 MET E 173 UNP P00517 LEU 174 ENGINEERED MUTATION SEQADV 4Z83 LYS E 181 UNP P00517 GLN 182 ENGINEERED MUTATION SEQRES 1 E 350 GLY ASN ALA ALA ALA ALA LYS LYS GLY SER GLU GLN GLU SEQRES 2 E 350 SER VAL LYS GLU PHE LEU ALA LYS ALA LYS GLU ASP PHE SEQRES 3 E 350 LEU LYS LYS TRP GLU ASN PRO ALA GLN ASN THR ALA HIS SEQRES 4 E 350 LEU ASP GLN PHE GLU ARG ILE LYS THR LEU GLY THR GLY SEQRES 5 E 350 SER PHE GLY ARG VAL MET LEU VAL LYS HIS MET GLU THR SEQRES 6 E 350 GLY ASN HIS TYR ALA MET LYS ILE LEU ASP LYS GLN LYS SEQRES 7 E 350 VAL VAL LYS LEU LYS GLN ILE GLU HIS THR LEU ASN GLU SEQRES 8 E 350 LYS ARG ILE LEU GLN ALA VAL ASN PHE PRO PHE LEU VAL SEQRES 9 E 350 LYS LEU GLU PHE SER PHE LYS ASP ASN SER ASN LEU TYR SEQRES 10 E 350 MET VAL MET GLU TYR ALA PRO GLY GLY GLU MET PHE SER SEQRES 11 E 350 HIS LEU ARG ARG ILE GLY ARG PHE SER GLU PRO HIS ALA SEQRES 12 E 350 ARG PHE TYR ALA ALA GLN ILE VAL LEU THR PHE GLU TYR SEQRES 13 E 350 LEU HIS SER LEU ASP LEU ILE TYR ARG ASP LEU LYS PRO SEQRES 14 E 350 GLU ASN LEU MET ILE ASP GLN GLN GLY TYR ILE LYS VAL SEQRES 15 E 350 THR ASP PHE GLY PHE ALA LYS ARG VAL LYS GLY ARG THR SEQRES 16 E 350 TRP TPO LEU CYS GLY THR PRO GLU TYR LEU ALA PRO GLU SEQRES 17 E 350 ILE ILE LEU SER LYS GLY TYR ASN LYS ALA VAL ASP TRP SEQRES 18 E 350 TRP ALA LEU GLY VAL LEU ILE TYR GLU MET ALA ALA GLY SEQRES 19 E 350 TYR PRO PRO PHE PHE ALA ASP GLN PRO ILE GLN ILE TYR SEQRES 20 E 350 GLU LYS ILE VAL SER GLY LYS VAL ARG PHE PRO SER HIS SEQRES 21 E 350 PHE SER SER ASP LEU LYS ASP LEU LEU ARG ASN LEU LEU SEQRES 22 E 350 GLN VAL ASP LEU THR LYS ARG PHE GLY ASN LEU LYS ASN SEQRES 23 E 350 GLY VAL ASN ASP ILE LYS ASN HIS LYS TRP PHE ALA THR SEQRES 24 E 350 THR ASP TRP ILE ALA ILE TYR GLN ARG LYS VAL GLU ALA SEQRES 25 E 350 PRO PHE ILE PRO LYS PHE LYS GLY PRO GLY ASP THR SER SEQRES 26 E 350 ASN PHE ASP ASP TYR GLU GLU GLU GLU ILE ARG VAL SEP SEQRES 27 E 350 ILE ASN GLU LYS CYS GLY LYS GLU PHE SER GLU PHE SEQRES 1 I 20 THR THR TYR ALA ASP PHE ILE ALA SER GLY ARG THR GLY SEQRES 2 I 20 ARG ARG ASN ALA ILE HIS ASP MODRES 4Z83 TPO E 197 THR MODIFIED RESIDUE MODRES 4Z83 SEP E 338 SER MODIFIED RESIDUE HET TPO E 197 17 HET SEP E 338 14 HET 4L7 E 401 39 HET 4L7 E 402 11 HETNAM TPO PHOSPHOTHREONINE HETNAM SEP PHOSPHOSERINE HETNAM 4L7 7-{(3S,4R)-4-[(5-BROMOTHIOPHEN-2-YL) HETNAM 2 4L7 CARBONYL]PYRROLIDIN-3-YL}QUINAZOLIN-4(3H)-ONE HETSYN TPO PHOSPHONOTHREONINE HETSYN SEP PHOSPHONOSERINE FORMUL 1 TPO C4 H10 N O6 P FORMUL 1 SEP C3 H8 N O6 P FORMUL 3 4L7 2(C17 H14 BR N3 O2 S) FORMUL 5 HOH *375(H2 O) HELIX 1 AA1 SER E 14 ASN E 32 1 19 HELIX 2 AA2 HIS E 39 ASP E 41 5 3 HELIX 3 AA3 LYS E 76 LEU E 82 1 7 HELIX 4 AA4 GLN E 84 GLN E 96 1 13 HELIX 5 AA5 GLU E 127 GLY E 136 1 10 HELIX 6 AA6 SER E 139 LEU E 160 1 22 HELIX 7 AA7 LYS E 168 GLU E 170 5 3 HELIX 8 AA8 THR E 201 LEU E 205 5 5 HELIX 9 AA9 ALA E 206 LEU E 211 1 6 HELIX 10 AB1 LYS E 217 GLY E 234 1 18 HELIX 11 AB2 GLN E 242 GLY E 253 1 12 HELIX 12 AB3 SER E 262 LEU E 273 1 12 HELIX 13 AB4 VAL E 288 ASN E 293 1 6 HELIX 14 AB5 HIS E 294 ALA E 298 5 5 HELIX 15 AB6 ASP E 301 GLN E 307 1 7 HELIX 16 AB7 THR I 2 ALA I 8 1 7 SHEET 1 AA1 5 PHE E 43 GLY E 52 0 SHEET 2 AA1 5 GLY E 55 HIS E 62 -1 O VAL E 57 N LEU E 49 SHEET 3 AA1 5 HIS E 68 ASP E 75 -1 O ILE E 73 N ARG E 56 SHEET 4 AA1 5 ASN E 115 GLU E 121 -1 O MET E 118 N LYS E 72 SHEET 5 AA1 5 LEU E 106 LYS E 111 -1 N PHE E 110 O TYR E 117 SHEET 1 AA2 2 LEU E 162 ILE E 163 0 SHEET 2 AA2 2 LYS E 189 ARG E 190 -1 O LYS E 189 N ILE E 163 SHEET 1 AA3 2 LEU E 172 ILE E 174 0 SHEET 2 AA3 2 ILE E 180 VAL E 182 -1 O LYS E 181 N MET E 173 LINK C TRP E 196 N TPO E 197 1555 1555 1.33 LINK C TPO E 197 N LEU E 198 1555 1555 1.32 LINK C VAL E 337 N SEP E 338 1555 1555 1.33 LINK C SEP E 338 N ILE E 339 1555 1555 1.33 SITE 1 AC1 20 GLY E 50 THR E 51 GLY E 52 SER E 53 SITE 2 AC1 20 PHE E 54 GLY E 55 VAL E 57 ALA E 70 SITE 3 AC1 20 LEU E 74 VAL E 104 MET E 120 GLU E 121 SITE 4 AC1 20 TYR E 122 ALA E 123 GLU E 127 GLU E 170 SITE 5 AC1 20 MET E 173 THR E 183 ASP E 184 HOH E 535 SITE 1 AC2 8 VAL E 15 PHE E 18 PHE E 100 LEU E 152 SITE 2 AC2 8 GLU E 155 TYR E 306 HOH E 681 HOH E 805 CRYST1 82.575 61.491 78.948 90.00 90.00 90.00 P 21 21 21 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.012110 0.000000 0.000000 0.00000 SCALE2 0.000000 0.016263 0.000000 0.00000 SCALE3 0.000000 0.000000 0.012667 0.00000