HEADER TRANSFERASE 08-APR-15 4Z84 TITLE PKAB3 IN COMPLEX WITH PYRROLIDINE INHIBITOR 34A COMPND MOL_ID: 1; COMPND 2 MOLECULE: CAMP-DEPENDENT PROTEIN KINASE CATALYTIC SUBUNIT ALPHA; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: PKA C-ALPHA; COMPND 5 EC: 2.7.11.11; COMPND 6 ENGINEERED: YES; COMPND 7 MUTATION: YES; COMPND 8 MOL_ID: 2; COMPND 9 MOLECULE: CAMP-DEPENDENT PROTEIN KINASE INHIBITOR ALPHA; COMPND 10 CHAIN: I; COMPND 11 SYNONYM: PKI-ALPHA,CAMP-DEPENDENT PROTEIN KINASE INHIBITOR, COMPND 12 MUSCLE/BRAIN ISOFORM; COMPND 13 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: BOS TAURUS; SOURCE 3 ORGANISM_COMMON: BOVINE; SOURCE 4 ORGANISM_TAXID: 9913; SOURCE 5 GENE: PRKACA; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PT7-7; SOURCE 10 MOL_ID: 2; SOURCE 11 SYNTHETIC: YES; SOURCE 12 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 13 ORGANISM_COMMON: HUMAN; SOURCE 14 ORGANISM_TAXID: 9606 KEYWDS INHIBITOR, PROTEIN KINASE, STRUCTURE-GUIDED, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR B.A.LUND,K.A.ALAM,R.A.ENGH REVDAT 3 10-JAN-24 4Z84 1 REMARK REVDAT 2 27-JAN-16 4Z84 1 JRNL REVDAT 1 02-DEC-15 4Z84 0 JRNL AUTH B.S.LAUBER,L.A.HARDEGGER,A.K.ASRAFUL,B.A.LUND,O.DUMELE, JRNL AUTH 2 M.HARDER,B.KUHN,R.A.ENGH,F.DIEDERICH JRNL TITL ADDRESSING THE GLYCINE-RICH LOOP OF PROTEIN KINASES BY A JRNL TITL 2 MULTI-FACETTED INTERACTION NETWORK: INHIBITION OF PKA AND A JRNL TITL 3 PKB MIMIC. JRNL REF CHEMISTRY V. 22 211 2016 JRNL REFN ISSN 0947-6539 JRNL PMID 26578105 JRNL DOI 10.1002/CHEM.201503552 REMARK 2 REMARK 2 RESOLUTION. 1.55 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.9_1692 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.55 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 19.61 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.339 REMARK 3 COMPLETENESS FOR RANGE (%) : 91.5 REMARK 3 NUMBER OF REFLECTIONS : 51501 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.209 REMARK 3 R VALUE (WORKING SET) : 0.208 REMARK 3 FREE R VALUE : 0.234 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 3.854 REMARK 3 FREE R VALUE TEST SET COUNT : 1985 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 19.6093 - 3.7380 0.99 4065 166 0.1642 0.1873 REMARK 3 2 3.7380 - 2.9703 0.99 3910 159 0.1800 0.1930 REMARK 3 3 2.9703 - 2.5958 0.99 3874 156 0.2007 0.2332 REMARK 3 4 2.5958 - 2.3589 1.00 3886 159 0.2031 0.2401 REMARK 3 5 2.3589 - 2.1901 0.99 3809 153 0.2125 0.2766 REMARK 3 6 2.1901 - 2.0611 1.00 3842 156 0.2138 0.2491 REMARK 3 7 2.0611 - 1.9580 1.00 3844 151 0.2255 0.2346 REMARK 3 8 1.9580 - 1.8728 0.98 3776 159 0.2701 0.3157 REMARK 3 9 1.8728 - 1.8008 1.00 3849 148 0.2711 0.3093 REMARK 3 10 1.8008 - 1.7387 0.98 3751 151 0.2838 0.2719 REMARK 3 11 1.7387 - 1.6843 0.89 3410 139 0.3120 0.3362 REMARK 3 12 1.6843 - 1.6362 0.80 3027 120 0.3290 0.3504 REMARK 3 13 1.6362 - 1.5931 0.68 2618 97 0.3620 0.3578 REMARK 3 14 1.5931 - 1.5543 0.49 1855 71 0.3858 0.3894 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.231 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 29.183 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 20.71 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 29.92 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.010 3000 REMARK 3 ANGLE : 1.101 4068 REMARK 3 CHIRALITY : 0.045 433 REMARK 3 PLANARITY : 0.006 541 REMARK 3 DIHEDRAL : 13.623 1101 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 11 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 14 THROUGH 31 ) REMARK 3 ORIGIN FOR THE GROUP (A): -17.7054 -21.4026 1.8180 REMARK 3 T TENSOR REMARK 3 T11: 0.2787 T22: 0.2595 REMARK 3 T33: 0.2722 T12: -0.0079 REMARK 3 T13: -0.0543 T23: -0.0848 REMARK 3 L TENSOR REMARK 3 L11: 0.8249 L22: 0.5901 REMARK 3 L33: 0.3442 L12: -0.1014 REMARK 3 L13: 0.1316 L23: -0.0455 REMARK 3 S TENSOR REMARK 3 S11: 0.0236 S12: 0.0672 S13: -0.0335 REMARK 3 S21: -0.1220 S22: 0.0720 S23: -0.3186 REMARK 3 S31: 0.3425 S32: -0.0806 S33: 0.0868 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 32 THROUGH 54 ) REMARK 3 ORIGIN FOR THE GROUP (A): -36.7426 -12.7503 16.9252 REMARK 3 T TENSOR REMARK 3 T11: 0.2444 T22: 0.3776 REMARK 3 T33: 0.2814 T12: -0.1002 REMARK 3 T13: 0.0030 T23: 0.0038 REMARK 3 L TENSOR REMARK 3 L11: 0.2503 L22: 0.3060 REMARK 3 L33: 0.2141 L12: -0.0906 REMARK 3 L13: 0.1755 L23: 0.0959 REMARK 3 S TENSOR REMARK 3 S11: -0.0395 S12: -0.1257 S13: -0.0785 REMARK 3 S21: 0.0649 S22: -0.0972 S23: 0.1241 REMARK 3 S31: 0.0938 S32: -0.2198 S33: 0.0000 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 55 THROUGH 81 ) REMARK 3 ORIGIN FOR THE GROUP (A): -35.7987 -10.8956 18.8696 REMARK 3 T TENSOR REMARK 3 T11: 0.2221 T22: 0.3838 REMARK 3 T33: 0.2625 T12: -0.0710 REMARK 3 T13: 0.0089 T23: 0.0079 REMARK 3 L TENSOR REMARK 3 L11: 0.2427 L22: 0.0406 REMARK 3 L33: 0.4226 L12: -0.1017 REMARK 3 L13: 0.1501 L23: -0.0871 REMARK 3 S TENSOR REMARK 3 S11: 0.1307 S12: -0.3968 S13: -0.0230 REMARK 3 S21: 0.1431 S22: 0.0494 S23: 0.2234 REMARK 3 S31: 0.2214 S32: -0.3244 S33: 0.0206 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 82 THROUGH 111 ) REMARK 3 ORIGIN FOR THE GROUP (A): -26.9801 -11.5244 9.2484 REMARK 3 T TENSOR REMARK 3 T11: 0.1886 T22: 0.1632 REMARK 3 T33: 0.1792 T12: -0.0072 REMARK 3 T13: -0.0142 T23: -0.0087 REMARK 3 L TENSOR REMARK 3 L11: 0.4754 L22: 0.3795 REMARK 3 L33: 0.0009 L12: 0.3581 REMARK 3 L13: 0.0084 L23: 0.0102 REMARK 3 S TENSOR REMARK 3 S11: 0.0247 S12: 0.0229 S13: 0.0863 REMARK 3 S21: -0.0650 S22: 0.0167 S23: 0.0754 REMARK 3 S31: 0.1050 S32: -0.1396 S33: -0.0001 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 112 THROUGH 179 ) REMARK 3 ORIGIN FOR THE GROUP (A): -16.9036 -12.1136 19.9008 REMARK 3 T TENSOR REMARK 3 T11: 0.1888 T22: 0.1776 REMARK 3 T33: 0.1382 T12: -0.0044 REMARK 3 T13: -0.0041 T23: 0.0153 REMARK 3 L TENSOR REMARK 3 L11: 0.3916 L22: 0.4460 REMARK 3 L33: 0.3053 L12: -0.0065 REMARK 3 L13: 0.2065 L23: 0.2839 REMARK 3 S TENSOR REMARK 3 S11: 0.0494 S12: -0.0987 S13: -0.0817 REMARK 3 S21: 0.0774 S22: 0.0225 S23: 0.0327 REMARK 3 S31: 0.1613 S32: -0.1099 S33: 0.0015 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 180 THROUGH 233 ) REMARK 3 ORIGIN FOR THE GROUP (A): -12.4823 -2.4538 11.4452 REMARK 3 T TENSOR REMARK 3 T11: 0.1690 T22: 0.1438 REMARK 3 T33: 0.1446 T12: -0.0041 REMARK 3 T13: -0.0002 T23: 0.0082 REMARK 3 L TENSOR REMARK 3 L11: 0.4226 L22: 0.1023 REMARK 3 L33: 0.1431 L12: -0.0401 REMARK 3 L13: 0.1909 L23: 0.0745 REMARK 3 S TENSOR REMARK 3 S11: -0.0328 S12: 0.0959 S13: 0.0763 REMARK 3 S21: -0.0336 S22: 0.0230 S23: -0.0252 REMARK 3 S31: -0.0424 S32: 0.0470 S33: 0.0000 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 234 THROUGH 272 ) REMARK 3 ORIGIN FOR THE GROUP (A): -1.6594 1.9409 21.9561 REMARK 3 T TENSOR REMARK 3 T11: 0.1914 T22: 0.1791 REMARK 3 T33: 0.1946 T12: 0.0104 REMARK 3 T13: -0.0130 T23: -0.0014 REMARK 3 L TENSOR REMARK 3 L11: 0.5519 L22: 0.3524 REMARK 3 L33: 0.3075 L12: 0.2163 REMARK 3 L13: 0.3699 L23: 0.0062 REMARK 3 S TENSOR REMARK 3 S11: -0.0433 S12: -0.0473 S13: 0.0750 REMARK 3 S21: 0.0888 S22: -0.0376 S23: -0.1759 REMARK 3 S31: -0.1434 S32: 0.1823 S33: -0.0006 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 273 THROUGH 317 ) REMARK 3 ORIGIN FOR THE GROUP (A): -2.8806 -15.2143 15.3830 REMARK 3 T TENSOR REMARK 3 T11: 0.1745 T22: 0.1650 REMARK 3 T33: 0.1973 T12: 0.0443 REMARK 3 T13: 0.0136 T23: -0.0283 REMARK 3 L TENSOR REMARK 3 L11: 0.9300 L22: 0.7425 REMARK 3 L33: 0.9087 L12: -0.0572 REMARK 3 L13: 0.8884 L23: 0.1343 REMARK 3 S TENSOR REMARK 3 S11: 0.0201 S12: 0.1762 S13: -0.1458 REMARK 3 S21: -0.1547 S22: 0.0308 S23: -0.1713 REMARK 3 S31: 0.1110 S32: 0.1305 S33: 0.0016 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 318 THROUGH 350 ) REMARK 3 ORIGIN FOR THE GROUP (A): -36.4563 -7.4186 19.2973 REMARK 3 T TENSOR REMARK 3 T11: 0.2611 T22: 0.4103 REMARK 3 T33: 0.2640 T12: -0.0189 REMARK 3 T13: 0.0176 T23: -0.0199 REMARK 3 L TENSOR REMARK 3 L11: 0.5385 L22: 0.5753 REMARK 3 L33: 0.0596 L12: 0.4913 REMARK 3 L13: -0.0412 L23: -0.1258 REMARK 3 S TENSOR REMARK 3 S11: 0.0999 S12: -0.2384 S13: 0.1212 REMARK 3 S21: 0.1504 S22: -0.1725 S23: -0.0350 REMARK 3 S31: 0.1808 S32: -0.0748 S33: 0.0002 REMARK 3 TLS GROUP : 10 REMARK 3 SELECTION: CHAIN 'I' AND (RESID 65 THROUGH 73 ) REMARK 3 ORIGIN FOR THE GROUP (A): -6.5866 4.4696 34.4508 REMARK 3 T TENSOR REMARK 3 T11: 0.2194 T22: 0.2593 REMARK 3 T33: 0.2070 T12: 0.0046 REMARK 3 T13: 0.0047 T23: -0.0156 REMARK 3 L TENSOR REMARK 3 L11: 0.0609 L22: 0.0208 REMARK 3 L33: 0.0528 L12: 0.0090 REMARK 3 L13: 0.0167 L23: -0.0159 REMARK 3 S TENSOR REMARK 3 S11: -0.0015 S12: 0.2035 S13: -0.0931 REMARK 3 S21: 0.0109 S22: 0.0919 S23: -0.0495 REMARK 3 S31: -0.2077 S32: 0.1914 S33: 0.0003 REMARK 3 TLS GROUP : 11 REMARK 3 SELECTION: CHAIN 'I' AND (RESID 123 THROUGH 329 ) REMARK 3 ORIGIN FOR THE GROUP (A): -18.4702 3.9089 23.2268 REMARK 3 T TENSOR REMARK 3 T11: 0.2067 T22: 0.2501 REMARK 3 T33: 0.1927 T12: 0.0092 REMARK 3 T13: 0.0014 T23: -0.0222 REMARK 3 L TENSOR REMARK 3 L11: 0.0301 L22: 0.1086 REMARK 3 L33: 0.0906 L12: -0.0345 REMARK 3 L13: 0.0522 L23: -0.0416 REMARK 3 S TENSOR REMARK 3 S11: 0.0809 S12: 0.1834 S13: 0.1364 REMARK 3 S21: 0.0149 S22: -0.1314 S23: 0.1545 REMARK 3 S31: 0.0646 S32: -0.1568 S33: 0.0000 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4Z84 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 08-APR-15. REMARK 100 THE DEPOSITION ID IS D_1000208790. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 24-NOV-12 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7 REMARK 200 NUMBER OF CRYSTALS USED : NULL REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : BESSY REMARK 200 BEAMLINE : 14.1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.91841 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 225 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS JANUARY 10, 2014 REMARK 200 DATA SCALING SOFTWARE : XDS JANUARY 10, 2014 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 51501 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.554 REMARK 200 RESOLUTION RANGE LOW (A) : 19.608 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 91.5 REMARK 200 DATA REDUNDANCY : 3.400 REMARK 200 R MERGE (I) : 0.12700 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 5.9400 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.55 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.59 REMARK 200 COMPLETENESS FOR SHELL (%) : 0.5 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER 2.5.5 REMARK 200 STARTING MODEL: 1Q61 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 46.83 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.31 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: THE DROPLETS, CONTAINING 16 MG/ML REMARK 280 PROTEIN 25 MM BIS-TRIS-HCL, PH 7.0, 150 MM KCL, 1.5MM OCTANOYL-N- REMARK 280 METHYLGLUCAMIDE, 0.8 MM PKI PEPTIDE AND 1MM OF THE PYRROLIDINE REMARK 280 INHIBITOR 34A, WERE EQUILIBRATED AGAINST 12-26 % (V/V) METHANOL., REMARK 280 VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 30.92600 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 39.75300 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 39.21550 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 39.75300 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 30.92600 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 39.21550 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2240 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 15190 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -7.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, I REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 0 REMARK 465 GLY A 1 REMARK 465 ASN A 2 REMARK 465 ALA A 3 REMARK 465 ALA A 4 REMARK 465 ALA A 5 REMARK 465 ALA A 6 REMARK 465 LYS A 7 REMARK 465 LYS A 8 REMARK 465 GLY A 9 REMARK 465 SER A 10 REMARK 465 GLU A 11 REMARK 465 GLN A 12 REMARK 465 GLU A 13 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 16 CE NZ REMARK 470 GLU A 17 CG CD OE1 OE2 REMARK 470 LYS A 21 CD CE NZ REMARK 470 LYS A 23 CE NZ REMARK 470 GLU A 24 CG CD OE1 OE2 REMARK 470 LYS A 28 CD CE NZ REMARK 470 LYS A 213 CD CE NZ REMARK 470 GLN A 242 CG CD OE1 NE2 REMARK 470 GLN A 245 NE2 REMARK 470 LYS A 254 CD CE NZ REMARK 470 LYS A 285 CG CD CE NZ REMARK 470 LYS A 295 CE NZ REMARK 470 LYS A 309 CE NZ REMARK 470 GLU A 311 CG CD OE1 OE2 REMARK 470 LYS A 317 CG CD CE NZ REMARK 470 PHE A 318 CG CD1 CD2 CE1 CE2 CZ REMARK 470 LYS A 319 CG CD CE NZ REMARK 470 GLU A 331 CG CD OE1 OE2 REMARK 470 GLU A 333 CG CD OE1 OE2 REMARK 470 GLU A 334 CG CD OE1 OE2 REMARK 470 ARG A 336 CG CD NE CZ NH1 NH2 REMARK 470 LYS A 345 NZ REMARK 470 ASP I 329 C O OD1 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 HD21 ASN A 293 O HOH A 508 1.57 REMARK 500 NH2 ARG A 137 O HOH A 501 2.05 REMARK 500 O HOH A 505 O HOH A 773 2.09 REMARK 500 O HOH A 577 O HOH A 845 2.09 REMARK 500 O HOH A 687 O HOH A 778 2.09 REMARK 500 O HOH I 409 O HOH I 420 2.10 REMARK 500 O HOH A 745 O HOH A 841 2.13 REMARK 500 O HOH A 823 O HOH A 881 2.14 REMARK 500 O HOH A 680 O HOH A 770 2.14 REMARK 500 O HOH A 872 O HOH A 901 2.15 REMARK 500 O HOH A 576 O HOH A 764 2.18 REMARK 500 O VAL A 251 O HOH A 502 2.19 REMARK 500 O HOH A 758 O HOH A 853 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LYS A 16 -53.70 -131.07 REMARK 500 ILE A 46 -55.88 -125.62 REMARK 500 PHE A 54 36.08 -144.66 REMARK 500 PHE A 110 -179.93 -171.06 REMARK 500 ASP A 166 44.28 -152.93 REMARK 500 ASP A 184 72.13 61.84 REMARK 500 ASP A 184 72.13 64.09 REMARK 500 LYS A 319 165.81 173.99 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 902 DISTANCE = 5.85 ANGSTROMS REMARK 525 HOH A 903 DISTANCE = 6.23 ANGSTROMS REMARK 525 HOH A 904 DISTANCE = 6.40 ANGSTROMS REMARK 525 HOH A 905 DISTANCE = 6.44 ANGSTROMS REMARK 525 HOH A 906 DISTANCE = 6.64 ANGSTROMS REMARK 525 HOH A 907 DISTANCE = 6.71 ANGSTROMS REMARK 525 HOH A 908 DISTANCE = 6.89 ANGSTROMS REMARK 525 HOH A 909 DISTANCE = 7.29 ANGSTROMS REMARK 525 HOH A 910 DISTANCE = 7.57 ANGSTROMS REMARK 525 HOH A 911 DISTANCE = 7.94 ANGSTROMS REMARK 525 HOH A 912 DISTANCE = 8.23 ANGSTROMS REMARK 525 HOH A 913 DISTANCE = 8.42 ANGSTROMS REMARK 525 HOH A 914 DISTANCE = 9.73 ANGSTROMS REMARK 525 HOH A 915 DISTANCE = 10.29 ANGSTROMS REMARK 525 HOH A 916 DISTANCE = 12.56 ANGSTROMS REMARK 525 HOH I 441 DISTANCE = 6.60 ANGSTROMS REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue NVX A 401 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1Q61 RELATED DB: PDB REMARK 900 1Q61 CONTAINS THE APO-FORM REMARK 900 RELATED ID: 4Z83 RELATED DB: PDB REMARK 900 4Z83 CONTAINS THE PYRROLIDINE INHIBITOR 47A DBREF 4Z84 A 0 350 UNP P00517 KAPCA_BOVIN 1 351 DBREF 4Z84 I 65 329 UNP P61925 IPKA_HUMAN 6 25 SEQADV 4Z84 ALA A 123 UNP P00517 VAL 124 ENGINEERED MUTATION SEQADV 4Z84 MET A 173 UNP P00517 LEU 174 ENGINEERED MUTATION SEQADV 4Z84 LYS A 181 UNP P00517 GLN 182 ENGINEERED MUTATION SEQRES 1 A 351 MET GLY ASN ALA ALA ALA ALA LYS LYS GLY SER GLU GLN SEQRES 2 A 351 GLU SER VAL LYS GLU PHE LEU ALA LYS ALA LYS GLU ASP SEQRES 3 A 351 PHE LEU LYS LYS TRP GLU ASN PRO ALA GLN ASN THR ALA SEQRES 4 A 351 HIS LEU ASP GLN PHE GLU ARG ILE LYS THR LEU GLY THR SEQRES 5 A 351 GLY SER PHE GLY ARG VAL MET LEU VAL LYS HIS MET GLU SEQRES 6 A 351 THR GLY ASN HIS TYR ALA MET LYS ILE LEU ASP LYS GLN SEQRES 7 A 351 LYS VAL VAL LYS LEU LYS GLN ILE GLU HIS THR LEU ASN SEQRES 8 A 351 GLU LYS ARG ILE LEU GLN ALA VAL ASN PHE PRO PHE LEU SEQRES 9 A 351 VAL LYS LEU GLU PHE SER PHE LYS ASP ASN SER ASN LEU SEQRES 10 A 351 TYR MET VAL MET GLU TYR ALA PRO GLY GLY GLU MET PHE SEQRES 11 A 351 SER HIS LEU ARG ARG ILE GLY ARG PHE SER GLU PRO HIS SEQRES 12 A 351 ALA ARG PHE TYR ALA ALA GLN ILE VAL LEU THR PHE GLU SEQRES 13 A 351 TYR LEU HIS SER LEU ASP LEU ILE TYR ARG ASP LEU LYS SEQRES 14 A 351 PRO GLU ASN LEU MET ILE ASP GLN GLN GLY TYR ILE LYS SEQRES 15 A 351 VAL THR ASP PHE GLY PHE ALA LYS ARG VAL LYS GLY ARG SEQRES 16 A 351 THR TRP TPO LEU CYS GLY THR PRO GLU TYR LEU ALA PRO SEQRES 17 A 351 GLU ILE ILE LEU SER LYS GLY TYR ASN LYS ALA VAL ASP SEQRES 18 A 351 TRP TRP ALA LEU GLY VAL LEU ILE TYR GLU MET ALA ALA SEQRES 19 A 351 GLY TYR PRO PRO PHE PHE ALA ASP GLN PRO ILE GLN ILE SEQRES 20 A 351 TYR GLU LYS ILE VAL SER GLY LYS VAL ARG PHE PRO SER SEQRES 21 A 351 HIS PHE SER SER ASP LEU LYS ASP LEU LEU ARG ASN LEU SEQRES 22 A 351 LEU GLN VAL ASP LEU THR LYS ARG PHE GLY ASN LEU LYS SEQRES 23 A 351 ASN GLY VAL ASN ASP ILE LYS ASN HIS LYS TRP PHE ALA SEQRES 24 A 351 THR THR ASP TRP ILE ALA ILE TYR GLN ARG LYS VAL GLU SEQRES 25 A 351 ALA PRO PHE ILE PRO LYS PHE LYS GLY PRO GLY ASP THR SEQRES 26 A 351 SER ASN PHE ASP ASP TYR GLU GLU GLU GLU ILE ARG VAL SEQRES 27 A 351 SEP ILE ASN GLU LYS CYS GLY LYS GLU PHE SER GLU PHE SEQRES 1 I 20 THR THR TYR ALA ASP PHE ILE ALA SER GLY ARG THR GLY SEQRES 2 I 20 ARG ARG ASN ALA ILE HIS ASP MODRES 4Z84 TPO A 197 THR MODIFIED RESIDUE MODRES 4Z84 SEP A 338 SER MODIFIED RESIDUE HET TPO A 197 11 HET SEP A 338 10 HET NVX A 401 41 HET MOH A 402 6 HET MOH A 403 6 HETNAM TPO PHOSPHOTHREONINE HETNAM SEP PHOSPHOSERINE HETNAM NVX 7-[(3S,4R)-4-(3-CHLOROPHENYL)CARBONYLPYRROLIDIN-3-YL]- HETNAM 2 NVX 3H-QUINAZOLIN-4-ONE HETNAM MOH METHANOL HETSYN TPO PHOSPHONOTHREONINE HETSYN SEP PHOSPHONOSERINE FORMUL 1 TPO C4 H10 N O6 P FORMUL 1 SEP C3 H8 N O6 P FORMUL 3 NVX C19 H16 CL N3 O2 FORMUL 4 MOH 2(C H4 O) FORMUL 6 HOH *457(H2 O) HELIX 1 AA1 LYS A 16 ASN A 32 1 17 HELIX 2 AA2 HIS A 39 ASP A 41 5 3 HELIX 3 AA3 LYS A 76 LEU A 82 1 7 HELIX 4 AA4 GLN A 84 VAL A 98 1 15 HELIX 5 AA5 GLU A 127 GLY A 136 1 10 HELIX 6 AA6 SER A 139 LEU A 160 1 22 HELIX 7 AA7 LYS A 168 GLU A 170 5 3 HELIX 8 AA8 THR A 201 LEU A 205 5 5 HELIX 9 AA9 ALA A 206 LEU A 211 1 6 HELIX 10 AB1 LYS A 217 GLY A 234 1 18 HELIX 11 AB2 GLN A 242 GLY A 253 1 12 HELIX 12 AB3 SER A 262 LEU A 273 1 12 HELIX 13 AB4 VAL A 288 ASN A 293 1 6 HELIX 14 AB5 HIS A 294 ALA A 298 5 5 HELIX 15 AB6 ASP A 301 GLN A 307 1 7 HELIX 16 AB7 THR I 66 ALA I 123 1 7 SHEET 1 AA1 5 PHE A 43 GLY A 52 0 SHEET 2 AA1 5 GLY A 55 HIS A 62 -1 O LEU A 59 N LYS A 47 SHEET 3 AA1 5 HIS A 68 ASP A 75 -1 O MET A 71 N MET A 58 SHEET 4 AA1 5 ASN A 115 GLU A 121 -1 O MET A 118 N LYS A 72 SHEET 5 AA1 5 LEU A 106 LYS A 111 -1 N GLU A 107 O VAL A 119 SHEET 1 AA2 2 LEU A 162 ILE A 163 0 SHEET 2 AA2 2 LYS A 189 ARG A 190 -1 O LYS A 189 N ILE A 163 SHEET 1 AA3 2 LEU A 172 ILE A 174 0 SHEET 2 AA3 2 ILE A 180 VAL A 182 -1 O LYS A 181 N MET A 173 LINK C TRP A 196 N TPO A 197 1555 1555 1.33 LINK C TPO A 197 N LEU A 198 1555 1555 1.33 LINK C VAL A 337 N SEP A 338 1555 1555 1.33 LINK C SEP A 338 N ILE A 339 1555 1555 1.34 SITE 1 AC1 19 GLY A 50 THR A 51 GLY A 52 GLY A 55 SITE 2 AC1 19 ARG A 56 VAL A 57 ALA A 70 LYS A 72 SITE 3 AC1 19 MET A 120 GLU A 121 TYR A 122 ALA A 123 SITE 4 AC1 19 GLU A 127 GLU A 170 ASN A 171 MET A 173 SITE 5 AC1 19 THR A 183 ASP A 184 HOH A 512 CRYST1 61.852 78.431 79.506 90.00 90.00 90.00 P 21 21 21 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.016168 0.000000 0.000000 0.00000 SCALE2 0.000000 0.012750 0.000000 0.00000 SCALE3 0.000000 0.000000 0.012578 0.00000