HEADER HYDROLASE 09-APR-15 4Z8S TITLE STRUCTURAL STUDIES ON A NON-TOXIC HOMOLOGUE OF TYPE II RIPS FROM TITLE 2 MOMORDICA CHARANTIA (BITTER GOURD)-NATIVE-1 COMPND MOL_ID: 1; COMPND 2 MOLECULE: RRNA N-GLYCOSIDASE; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: UNP RESIDUES 24-270; COMPND 5 EC: 3.2.2.22; COMPND 6 MOL_ID: 2; COMPND 7 MOLECULE: RRNA N-GLYCOSIDASE; COMPND 8 CHAIN: B; COMPND 9 FRAGMENT: UNP RESIDUES 287-547; COMPND 10 EC: 3.2.2.22 SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MOMORDICA CHARANTIA; SOURCE 3 ORGANISM_COMMON: BITTER GOURD; SOURCE 4 ORGANISM_TAXID: 3673; SOURCE 5 MOL_ID: 2; SOURCE 6 ORGANISM_SCIENTIFIC: MOMORDICA CHARANTIA; SOURCE 7 ORGANISM_COMMON: BITTER GOURD; SOURCE 8 ORGANISM_TAXID: 3673 KEYWDS BETA-TREFOIL, TYPE II RIPS, GALACTOSE BINDING LECTIN, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR T.CHANDRAN,A.SHARMA,M.VIJAYAN REVDAT 5 20-NOV-24 4Z8S 1 REMARK REVDAT 4 08-NOV-23 4Z8S 1 HETSYN LINK REVDAT 3 29-JUL-20 4Z8S 1 COMPND REMARK HETNAM SSBOND REVDAT 3 2 1 LINK SITE ATOM REVDAT 2 09-OCT-19 4Z8S 1 JRNL REMARK REVDAT 1 23-MAR-16 4Z8S 0 JRNL AUTH T.CHANDRAN,A.SHARMA,M.VIJAYAN JRNL TITL STRUCTURAL STUDIES ON A NON-TOXIC HOMOLOGUE OF TYPE II RIPS JRNL TITL 2 FROM BITTER GOURD: MOLECULAR BASIS OF NON-TOXICITY, JRNL TITL 3 CONFORMATIONAL SELECTION AND GLYCAN STRUCTURE. JRNL REF J.BIOSCI. V. 40 929 2015 JRNL REFN ISSN 0250-4774 JRNL PMID 26648038 JRNL DOI 10.1007/S12038-015-9573-X REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH A.SHARMA,G.POHLENTZ,K.B.BOBBILI,A.A.JEYAPRAKASH,T.CHANDRAN, REMARK 1 AUTH 2 M.MORMANN,M.J.SWAMY,M.VIJAYAN REMARK 1 TITL CRYSTALLIZATION AND PRELIMINARY X-RAY STUDIES OF A REMARK 1 TITL 2 GALACTOSE-SPECIFIC LECTIN FROM THE SEEDS OF BITTER GOURD REMARK 1 TITL 3 (MOMORDICA CHARANTIA). REMARK 1 REF ACTA CRYSTALLOGR. F BIOL. V. 66 1037 2010 REMARK 1 REF 2 CRYSTALLOGR. REMARK 1 REFN ESSN 1744-3091 REMARK 1 PMID 20823520 REMARK 1 DOI 10.1107/S174430911002659X REMARK 1 REFERENCE 2 REMARK 1 AUTH A.SHARMA,G.POHLENTZ,K.B.BOBBILI,A.A.JEYAPRAKASH,T.CHANDRAN, REMARK 1 AUTH 2 M.MORMANN,M.J.SWAMY,M.VIJAYAN REMARK 1 TITL THE SEQUENCE AND STRUCTURE OF SNAKE GOURD (TRICHOSANTHES REMARK 1 TITL 2 ANGUINA) SEED LECTIN, A THREE-CHAIN NONTOXIC HOMOLOGUE OF REMARK 1 TITL 3 TYPE II RIPS. REMARK 1 REF ACTA CRYSTALLOGR. D BIOL. V. 69 1493 2013 REMARK 1 REF 2 CRYSTALLOGR. REMARK 1 REFN ESSN 1399-0047 REMARK 1 PMID 23897472 REMARK 1 DOI 10.1107/S0907444913010020 REMARK 2 REMARK 2 RESOLUTION. 2.36 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0107 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.36 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 29.47 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 3 NUMBER OF REFLECTIONS : 34922 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.167 REMARK 3 R VALUE (WORKING SET) : 0.165 REMARK 3 FREE R VALUE : 0.201 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 1861 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.36 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.42 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2476 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 100.0 REMARK 3 BIN R VALUE (WORKING SET) : 0.2150 REMARK 3 BIN FREE R VALUE SET COUNT : 138 REMARK 3 BIN FREE R VALUE : 0.2380 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3944 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 112 REMARK 3 SOLVENT ATOMS : 407 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 27.00 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 28.97 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 2.47000 REMARK 3 B22 (A**2) : -1.82000 REMARK 3 B33 (A**2) : -0.65000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.202 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.173 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.121 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 5.227 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.952 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.936 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 4146 ; 0.012 ; 0.020 REMARK 3 BOND LENGTHS OTHERS (A): 3818 ; 0.002 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 5636 ; 1.617 ; 1.965 REMARK 3 BOND ANGLES OTHERS (DEGREES): 8773 ; 1.175 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 506 ; 6.671 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 186 ;34.982 ;25.054 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 663 ;13.522 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 18 ;16.376 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 660 ; 0.133 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 4692 ; 0.006 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 958 ; 0.002 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2030 ; 1.808 ; 2.730 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 2029 ; 1.807 ; 2.731 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2534 ; 2.878 ; 4.090 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 2535 ; 2.877 ; 4.090 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 2114 ; 2.548 ; 3.068 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 2115 ; 2.548 ; 3.070 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 3103 ; 4.085 ; 4.488 REMARK 3 LONG RANGE B REFINED ATOMS (A**2): 4995 ; 6.009 ;22.908 REMARK 3 LONG RANGE B OTHER ATOMS (A**2): 4996 ; 6.009 ;22.915 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 4Z8S COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 10-APR-15. REMARK 100 THE DEPOSITION ID IS D_1000208507. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 22-OCT-09 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.3 REMARK 200 NUMBER OF CRYSTALS USED : NULL REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : BRUKER AXS MICROSTAR REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.54179 REMARK 200 MONOCHROMATOR : MIRRORS POLAR 0.000 REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : MAR SCANNER 345 MM PLATE REMARK 200 INTENSITY-INTEGRATION SOFTWARE : NULL REMARK 200 DATA SCALING SOFTWARE : NULL REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 36839 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.360 REMARK 200 RESOLUTION RANGE LOW (A) : 29.470 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 6.000 REMARK 200 R MERGE (I) : 0.11000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 12.2000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.36 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.49 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 6.00 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 3.180 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: NULL REMARK 200 STARTING MODEL: 1HWM REMARK 200 REMARK 200 REMARK: ORTHORHOMBIC CRYSTALS, GLYCEROL USED AS CRYO-PROTECTANT REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 66.06 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.62 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1M HEPES, 20% W/V PEG 10000, PH 7.3, REMARK 280 VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X+1/2,Y+1/2,-Z REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 72.48500 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 67.10500 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 72.48500 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 67.10500 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: THE AUTHOR STATES THAT THE SYMMETRY RELATED HALVES ARE REMARK 300 COVALENTLY LINKED THROUGH A DISULPHIDE BRIDGE. THEREFORE, THE WHOLE REMARK 300 MOLECULE FORMALLY IS A MONOMER. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 5800 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 21030 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -1.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ILE A 129 CD1 REMARK 470 GLU B 2 OE1 OE2 REMARK 470 TYR B 80 CD1 CD2 CE1 CE2 CZ OH REMARK 470 ARG B 82 CG CD NE CZ NH1 NH2 REMARK 470 TYR B 83 CG CD1 CD2 CE1 CE2 CZ OH REMARK 470 LYS B 165 CE NZ REMARK 470 ASP B 250 CG OD1 OD2 REMARK 470 LYS B 251 CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 ND2 ASN A 108 O5 NAG A 301 1.70 REMARK 500 O4 NAG D 2 O5 BMA D 3 2.07 REMARK 500 O3 NAG D 1 C2 FUC D 5 2.08 REMARK 500 ND2 ASN B 97 O5 NAG C 1 2.12 REMARK 500 O2 BMA D 3 O5 XYP D 4 2.13 REMARK 500 CG ASN A 108 C1 NAG A 301 2.14 REMARK 500 O4 NAG D 2 C2 BMA D 3 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 ARG B 213 C TRP B 214 N 0.214 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ASN A 106 O - C - N ANGL. DEV. = -11.0 DEGREES REMARK 500 PHE A 107 C - N - CA ANGL. DEV. = 19.5 DEGREES REMARK 500 ARG B 213 CA - C - N ANGL. DEV. = -15.9 DEGREES REMARK 500 ARG B 213 O - C - N ANGL. DEV. = 15.0 DEGREES REMARK 500 TRP B 214 C - N - CA ANGL. DEV. = -29.7 DEGREES REMARK 500 TRP B 214 CA - C - N ANGL. DEV. = 23.9 DEGREES REMARK 500 TRP B 214 O - C - N ANGL. DEV. = -27.1 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LEU A 2 133.42 -37.04 REMARK 500 ALA A 79 -117.42 56.30 REMARK 500 ASP A 99 63.29 -100.51 REMARK 500 ASN A 106 58.53 -94.28 REMARK 500 VAL A 158 -63.70 -104.80 REMARK 500 TYR A 231 38.18 -97.44 REMARK 500 ASN A 238 -59.54 -123.21 REMARK 500 GLN A 245 -36.32 -131.13 REMARK 500 ASP B 17 19.22 58.36 REMARK 500 LYS B 125 0.70 -66.40 REMARK 500 ASN B 185 89.71 -152.28 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: MAIN CHAIN PLANARITY REMARK 500 REMARK 500 THE FOLLOWING RESIDUES HAVE A PSEUDO PLANARITY REMARK 500 TORSION ANGLE, C(I) - CA(I) - N(I+1) - O(I), GREATER REMARK 500 10.0 DEGREES. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 500 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 500 I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI ANGLE REMARK 500 TRP B 214 -12.73 REMARK 500 REMARK 500 REMARK: NULL REMARK 999 REMARK 999 SEQUENCE REMARK 999 THE 547 LONG POLYPEPTIDE CHAIN IS CLEAVED POST-TRANSLATIONALLY INTO REMARK 999 A AND B CHAINS. THE MISSING RESIDUES CORRESPOND TO THE LINKER REMARK 999 REGION. DBREF 4Z8S A 1 247 UNP B7X8M2 B7X8M2_MOMCH 24 270 DBREF 4Z8S B 1 261 UNP B7X8M2 B7X8M2_MOMCH 287 547 SEQRES 1 A 247 ASN LEU SER LEU SER GLN SER ASN PHE SER ALA ASP THR SEQRES 2 A 247 TYR LYS SER PHE ILE LYS ASN LEU ARG LYS GLN LEU THR SEQRES 3 A 247 ILE GLY ALA SER TYR GLY SER ALA GLY ILE PRO ILE LEU SEQRES 4 A 247 LYS HIS SER VAL PRO ILE CYS GLU ARG PHE LEU LEU VAL SEQRES 5 A 247 ASP LEU THR ASN GLY ASP ASN GLU THR ILE THR LEU ALA SEQRES 6 A 247 ILE ASN VAL GLU ASP ALA GLY PHE ALA ALA TYR ARG ALA SEQRES 7 A 247 ALA ASP ARG SER TYR PHE PHE GLN ASN ALA PRO PRO ILE SEQRES 8 A 247 ALA SER TYR VAL ILE PHE THR ASP THR ASN GLN ASN ILE SEQRES 9 A 247 MET ASN PHE ASN ASN THR PHE GLU SER ILE GLU ILE VAL SEQRES 10 A 247 GLY GLY THR THR ARG SER GLU THR PRO LEU GLY ILE MET SEQRES 11 A 247 HIS PHE GLU ALA SER ILE PHE HIS LEU PHE VAL HIS ASP SEQRES 12 A 247 GLU ASN TYR VAL PRO THR SER PHE LEU VAL LEU ILE GLN SEQRES 13 A 247 MET VAL LEU GLU ALA ALA LYS PHE LYS PHE ILE GLU GLN SEQRES 14 A 247 LYS VAL ILE HIS SER ILE MET ASP MET GLU ASP PHE THR SEQRES 15 A 247 PRO GLY LEU ALA MET LEU SER LEU GLU GLU ASN TRP THR SEQRES 16 A 247 GLN LEU SER LEU GLN LEU GLN ALA SER GLU SER LEU ASN SEQRES 17 A 247 GLY VAL PHE GLY ASP SER VAL SER LEU TYR ASN SER MET SEQRES 18 A 247 ASP GLU PRO ILE GLY VAL ASP SER MET TYR TYR PRO ILE SEQRES 19 A 247 LEU THR ALA ASN MET ALA PHE GLN LEU TYR GLN CYS PRO SEQRES 1 B 261 ASN GLU GLN CYS SER PRO GLN GLN ARG THR THR ARG ILE SEQRES 2 B 261 SER GLY ARG ASP GLY LEU CYS VAL ASP VAL TYR GLY ALA SEQRES 3 B 261 LEU THR ALA ASP GLY SER ARG VAL ILE LEU TYR PRO CYS SEQRES 4 B 261 GLY GLN GLN GLN ASN GLN GLN TRP THR PHE TYR PRO ASP SEQRES 5 B 261 ASN THR ILE ARG SER LEU GLY LYS CYS LEU ALA THR SER SEQRES 6 B 261 ALA LEU SER SER GLY SER ASN VAL VAL ILE THR ASN CYS SEQRES 7 B 261 ASP TYR LEU ARG TYR ASP ASP GLY TRP MET VAL SER SER SEQRES 8 B 261 SER GLY THR MET MET ASN LYS SER SER HIS LEU VAL LEU SEQRES 9 B 261 THR ALA ASN ALA ALA THR SER ARG THR ASN LEU THR GLY SEQRES 10 B 261 GLU ASN ASN VAL PHE ALA ALA LYS GLN ALA TRP ARG ILE SEQRES 11 B 261 GLY ASN TYR VAL GLU PRO ILE VAL THR THR ILE ILE GLY SEQRES 12 B 261 LEU ARG HIS MET CYS LEU GLU ALA THR ASP ASN ASP THR SEQRES 13 B 261 ASN VAL TRP LEU GLU SER CYS VAL LYS ASN LYS THR LYS SEQRES 14 B 261 GLN TYR TRP ALA LEU TYR SER ASP ASP THR ILE ARG VAL SEQRES 15 B 261 ASN ASN ASN ARG ASN LEU CYS VAL SER SER SER THR ASP SEQRES 16 B 261 SER SER SER LYS LEU ILE VAL ILE ARG ARG CYS ASP GLY SEQRES 17 B 261 SER ILE ASN GLN ARG TRP VAL PHE THR PRO GLN GLY THR SEQRES 18 B 261 ILE SER ASN PRO GLY TYR GLU ALA VAL MET ASP VAL ALA SEQRES 19 B 261 GLN ASN ASP VAL TYR LEU LYS LYS ILE VAL LEU SER SER SEQRES 20 B 261 ALA THR ASP LYS GLY ASN GLY GLN GLN TRP THR VAL PHE SEQRES 21 B 261 TYR HET NAG C 1 14 HET NAG C 2 14 HET NAG D 1 14 HET NAG D 2 14 HET BMA D 3 11 HET XYP D 4 9 HET FUC D 5 10 HET NAG A 301 14 HET GOL B 301 6 HET GOL B 302 6 HETNAM NAG 2-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE HETNAM BMA BETA-D-MANNOPYRANOSE HETNAM XYP BETA-D-XYLOPYRANOSE HETNAM FUC ALPHA-L-FUCOPYRANOSE HETNAM GOL GLYCEROL HETSYN NAG N-ACETYL-BETA-D-GLUCOSAMINE; 2-ACETAMIDO-2-DEOXY-BETA- HETSYN 2 NAG D-GLUCOSE; 2-ACETAMIDO-2-DEOXY-D-GLUCOSE; 2-ACETAMIDO- HETSYN 3 NAG 2-DEOXY-GLUCOSE; N-ACETYL-D-GLUCOSAMINE HETSYN BMA BETA-D-MANNOSE; D-MANNOSE; MANNOSE HETSYN XYP BETA-D-XYLOSE; D-XYLOSE; XYLOSE HETSYN FUC ALPHA-L-FUCOSE; 6-DEOXY-ALPHA-L-GALACTOPYRANOSE; L- HETSYN 2 FUC FUCOSE; FUCOSE HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 3 NAG 5(C8 H15 N O6) FORMUL 4 BMA C6 H12 O6 FORMUL 4 XYP C5 H10 O5 FORMUL 4 FUC C6 H12 O5 FORMUL 6 GOL 2(C3 H8 O3) FORMUL 8 HOH *407(H2 O) HELIX 1 AA1 SER A 7 PHE A 9 5 3 HELIX 2 AA2 SER A 10 THR A 26 1 17 HELIX 3 AA3 PRO A 44 GLU A 47 5 4 HELIX 4 AA4 ILE A 91 VAL A 95 5 5 HELIX 5 AA5 THR A 110 GLY A 119 1 10 HELIX 6 AA6 THR A 121 THR A 125 5 5 HELIX 7 AA7 GLY A 128 VAL A 141 1 14 HELIX 8 AA8 TYR A 146 PHE A 164 1 19 HELIX 9 AA9 PHE A 164 ASP A 177 1 14 HELIX 10 AB1 GLY A 184 SER A 204 1 21 HELIX 11 AB2 GLU A 205 LEU A 207 5 3 HELIX 12 AB3 TYR A 232 ALA A 237 1 6 HELIX 13 AB4 ASN B 1 SER B 5 5 5 HELIX 14 AB5 GLY B 15 LEU B 19 5 5 HELIX 15 AB6 GLY B 25 LEU B 27 5 3 HELIX 16 AB7 GLN B 42 GLN B 46 5 5 HELIX 17 AB8 ASN B 77 ARG B 82 5 6 HELIX 18 AB9 ALA B 123 ALA B 127 5 5 HELIX 19 AC1 LEU B 144 HIS B 146 5 3 HELIX 20 AC2 LYS B 167 GLN B 170 5 4 HELIX 21 AC3 SER B 209 ARG B 213 5 5 HELIX 22 AC4 GLN B 235 LYS B 241 5 7 HELIX 23 AC5 GLY B 252 GLN B 256 5 5 SHEET 1 AA1 6 LEU A 2 SER A 5 0 SHEET 2 AA1 6 PHE A 49 THR A 55 1 O ASP A 53 N LEU A 2 SHEET 3 AA1 6 THR A 61 ASN A 67 -1 O LEU A 64 N VAL A 52 SHEET 4 AA1 6 GLY A 72 ALA A 78 -1 O ALA A 75 N ALA A 65 SHEET 5 AA1 6 ARG A 81 PHE A 84 -1 O ARG A 81 N ALA A 78 SHEET 6 AA1 6 ASN A 101 ILE A 104 1 O ASN A 103 N PHE A 84 SHEET 1 AA2 2 VAL A 210 TYR A 218 0 SHEET 2 AA2 2 PRO A 224 SER A 229 -1 O VAL A 227 N VAL A 215 SHEET 1 AA3 7 ARG B 9 THR B 11 0 SHEET 2 AA3 7 TRP B 47 PHE B 49 -1 O TRP B 47 N THR B 11 SHEET 3 AA3 7 ILE B 55 SER B 57 -1 O ARG B 56 N THR B 48 SHEET 4 AA3 7 LYS B 60 THR B 64 -1 O LEU B 62 N ILE B 55 SHEET 5 AA3 7 VAL B 73 THR B 76 -1 O VAL B 74 N ALA B 63 SHEET 6 AA3 7 SER B 32 TYR B 37 -1 N VAL B 34 O VAL B 73 SHEET 7 AA3 7 CYS B 20 VAL B 23 -1 N ASP B 22 O ILE B 35 SHEET 1 AA4 2 ILE B 13 SER B 14 0 SHEET 2 AA4 2 ARG B 129 ILE B 130 -1 O ARG B 129 N SER B 14 SHEET 1 AA5 2 TRP B 87 VAL B 89 0 SHEET 2 AA5 2 MET B 95 ASN B 97 -1 O MET B 96 N MET B 88 SHEET 1 AA6 2 VAL B 103 THR B 105 0 SHEET 2 AA6 2 THR B 116 GLU B 118 -1 O GLU B 118 N VAL B 103 SHEET 1 AA7 7 ASN B 157 GLU B 161 0 SHEET 2 AA7 7 MET B 147 THR B 152 -1 N CYS B 148 O GLU B 161 SHEET 3 AA7 7 ILE B 137 GLY B 143 -1 N GLY B 143 O MET B 147 SHEET 4 AA7 7 TRP B 172 LEU B 174 -1 O LEU B 174 N ILE B 137 SHEET 5 AA7 7 ILE B 180 VAL B 182 -1 O ARG B 181 N ALA B 173 SHEET 6 AA7 7 ASN B 185 SER B 191 -1 O VAL B 190 N ILE B 180 SHEET 7 AA7 7 VAL B 202 ARG B 205 -1 O VAL B 202 N SER B 191 SHEET 1 AA8 4 ASN B 157 GLU B 161 0 SHEET 2 AA8 4 MET B 147 THR B 152 -1 N CYS B 148 O GLU B 161 SHEET 3 AA8 4 ILE B 137 GLY B 143 -1 N GLY B 143 O MET B 147 SHEET 4 AA8 4 THR B 258 PHE B 260 -1 O THR B 258 N ILE B 142 SHEET 1 AA9 4 VAL B 215 PHE B 216 0 SHEET 2 AA9 4 ILE B 222 ASN B 224 -1 O SER B 223 N VAL B 215 SHEET 3 AA9 4 ALA B 229 VAL B 233 -1 O ALA B 229 N ASN B 224 SHEET 4 AA9 4 ILE B 243 SER B 246 -1 O SER B 246 N VAL B 230 SSBOND 1 CYS A 46 CYS A 46 1555 2665 2.05 SSBOND 2 CYS A 246 CYS B 4 1555 1555 2.09 SSBOND 3 CYS B 20 CYS B 39 1555 1555 2.06 SSBOND 4 CYS B 61 CYS B 78 1555 1555 2.06 SSBOND 5 CYS B 148 CYS B 163 1555 1555 2.09 SSBOND 6 CYS B 189 CYS B 206 1555 1555 2.01 LINK ND2 ASN A 108 C1 NAG A 301 1555 1555 1.16 LINK ND2 ASN B 97 C1 NAG C 1 1555 1555 1.26 LINK ND2 ASN B 114 C1 NAG D 1 1555 1555 1.51 LINK O4 NAG C 1 C1 NAG C 2 1555 1555 1.43 LINK O4 NAG D 1 C1 NAG D 2 1555 1555 1.38 LINK O3 NAG D 1 C1 FUC D 5 1555 1555 1.37 LINK O4 NAG D 2 C1 BMA D 3 1555 1555 1.36 LINK O2 BMA D 3 C1 XYP D 4 1555 1555 1.13 CRYST1 144.970 134.210 44.670 90.00 90.00 90.00 P 21 21 2 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.006898 0.000000 0.000000 0.00000 SCALE2 0.000000 0.007451 0.000000 0.00000 SCALE3 0.000000 0.000000 0.022386 0.00000