HEADER HYDROLASE 10-APR-15 4Z9A TITLE CRYSTAL STRUCTURE OF LOW MOLECULAR WEIGHT PROTEIN TYROSINE PHOSPHATASE TITLE 2 ISOFORM A COMPLEXED WITH PHENYLMETHANESULFONIC ACID COMPND MOL_ID: 1; COMPND 2 MOLECULE: LOW MOLECULAR WEIGHT PHOSPHOTYROSINE PROTEIN PHOSPHATASE; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: LMW-PTPASE,ADIPOCYTE ACID PHOSPHATASE,LOW MOLECULAR WEIGHT COMPND 5 CYTOSOLIC ACID PHOSPHATASE,RED CELL ACID PHOSPHATASE 1; COMPND 6 EC: 3.1.3.48,3.1.3.2; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: ACP1; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21DE3; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET28A KEYWDS PROTEIN TYROSINE PHOSPHATASE, HYDROLASE, PROTEIN-LIGAND COMPLEX, KEYWDS 2 PHENYLMETHANESULFONIC ACID EXPDTA X-RAY DIFFRACTION AUTHOR D.B.B.TRIVELLA,E.M.B.FONSECA,V.SCORSATO,M.P.DIAS,R.APARICIO REVDAT 6 27-SEP-23 4Z9A 1 REMARK REVDAT 5 01-JAN-20 4Z9A 1 REMARK REVDAT 4 17-APR-19 4Z9A 1 REMARK REVDAT 3 17-JAN-18 4Z9A 1 JRNL REMARK REVDAT 2 05-AUG-15 4Z9A 1 JRNL REVDAT 1 15-JUL-15 4Z9A 0 JRNL AUTH E.M.FONSECA,D.B.TRIVELLA,V.SCORSATO,M.P.DIAS,N.L.BAZZO, JRNL AUTH 2 K.R.MANDAPATI,F.L.DE OLIVEIRA,C.V.FERREIRA-HALDER,R.A.PILLI, JRNL AUTH 3 P.C.MIRANDA,R.APARICIO JRNL TITL CRYSTAL STRUCTURES OF THE APO FORM AND A COMPLEX OF HUMAN JRNL TITL 2 LMW-PTP WITH A PHOSPHONIC ACID PROVIDE NEW EVIDENCE OF A JRNL TITL 3 SECONDARY SITE POTENTIALLY RELATED TO THE ANCHORAGE OF JRNL TITL 4 NATURAL SUBSTRATES. JRNL REF BIOORG.MED.CHEM. V. 23 4462 2015 JRNL REFN ESSN 1464-3391 JRNL PMID 26117648 JRNL DOI 10.1016/J.BMC.2015.06.017 REMARK 2 REMARK 2 RESOLUTION. 2.10 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0049 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.10 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 28.07 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 97.6 REMARK 3 NUMBER OF REFLECTIONS : 9846 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.183 REMARK 3 R VALUE (WORKING SET) : 0.179 REMARK 3 FREE R VALUE : 0.235 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 7.500 REMARK 3 FREE R VALUE TEST SET COUNT : 796 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.10 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.15 REMARK 3 REFLECTION IN BIN (WORKING SET) : 682 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 97.15 REMARK 3 BIN R VALUE (WORKING SET) : 0.2670 REMARK 3 BIN FREE R VALUE SET COUNT : 69 REMARK 3 BIN FREE R VALUE : 0.2910 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1230 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 27 REMARK 3 SOLVENT ATOMS : 88 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 41.70 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.45000 REMARK 3 B22 (A**2) : -0.18000 REMARK 3 B33 (A**2) : 0.63000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.216 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.190 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.154 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 11.831 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.961 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.941 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 1294 ; 0.014 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): 1208 ; 0.001 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 1748 ; 1.660 ; 1.974 REMARK 3 BOND ANGLES OTHERS (DEGREES): 2782 ; 0.873 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 157 ; 6.448 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 65 ;31.888 ;23.692 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 229 ;13.881 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 12 ;18.317 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 189 ; 0.101 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 1464 ; 0.007 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 310 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 619 ; 2.304 ; 3.110 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 618 ; 2.258 ; 3.103 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 773 ; 3.288 ; 4.642 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 774 ; 3.294 ; 4.650 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 675 ; 2.813 ; 3.505 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 676 ; 2.812 ; 3.507 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 974 ; 4.204 ; 5.151 REMARK 3 LONG RANGE B REFINED ATOMS (A**2): 1516 ; 6.413 ;25.768 REMARK 3 LONG RANGE B OTHER ATOMS (A**2): 1517 ; 6.411 ;25.783 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 1 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 4 A 157 REMARK 3 ORIGIN FOR THE GROUP (A): 3.0116 4.9277 11.3402 REMARK 3 T TENSOR REMARK 3 T11: 0.0982 T22: 0.0775 REMARK 3 T33: 0.0378 T12: 0.0460 REMARK 3 T13: -0.0408 T23: -0.0409 REMARK 3 L TENSOR REMARK 3 L11: 0.8448 L22: 0.2997 REMARK 3 L33: 1.6205 L12: 0.4947 REMARK 3 L13: -0.0151 L23: -0.0172 REMARK 3 S TENSOR REMARK 3 S11: 0.1052 S12: 0.0565 S13: 0.0006 REMARK 3 S21: 0.0632 S22: 0.0619 S23: -0.0127 REMARK 3 S31: 0.3014 S32: 0.0488 S33: -0.1671 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 4Z9A COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 10-APR-15. REMARK 100 THE DEPOSITION ID IS D_1000208387. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 12-MAY-11 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : NULL REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : LNLS REMARK 200 BEAMLINE : W01B-MX2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.459 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 225 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALA VERSION 3.3.16 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 10699 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.100 REMARK 200 RESOLUTION RANGE LOW (A) : 32.600 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.2 REMARK 200 DATA REDUNDANCY : 4.000 REMARK 200 R MERGE (I) : 0.08500 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 9.2000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.10 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.21 REMARK 200 COMPLETENESS FOR SHELL (%) : 97.3 REMARK 200 DATA REDUNDANCY IN SHELL : 4.00 REMARK 200 R MERGE FOR SHELL (I) : 0.50800 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.200 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 5PNT REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 49.97 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.46 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 26% (W/V) PEG 5000, 0.2 M AMMONIUM REMARK 280 SULFATE, 0.2 M MES BUFFER PH 6.5, VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 291K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 16.37500 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 48.90000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 27.61500 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 48.90000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 16.37500 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 27.61500 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A -6 REMARK 465 SER A -5 REMARK 465 HIS A -4 REMARK 465 MET A -3 REMARK 465 GLU A -2 REMARK 465 PHE A -1 REMARK 465 MET A 0 REMARK 465 ALA A 1 REMARK 465 GLU A 2 REMARK 465 GLN A 3 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 457 O HOH A 466 2.17 REMARK 500 NH1 ARG A 97 O HOH A 401 2.17 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ASP A 42 CB - CG - OD1 ANGL. DEV. = 6.9 DEGREES REMARK 500 ARG A 75 NE - CZ - NH1 ANGL. DEV. = 3.2 DEGREES REMARK 500 ARG A 97 NE - CZ - NH1 ANGL. DEV. = 3.2 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 CYS A 17 -62.24 -103.02 REMARK 500 GLN A 122 13.14 -68.43 REMARK 500 ASN A 134 -157.78 -134.98 REMARK 500 LYS A 155 109.21 -162.81 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL A 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 302 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 303 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PMS A 304 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 5PNT RELATED DB: PDB REMARK 900 5PNT CONTAINS THE SAME PROTEIN IN COMPLEX WITH MES REMARK 900 RELATED ID: 3N8I RELATED DB: PDB REMARK 900 3N8I CONTAINS THE SAME PROTEIN IN COMPLEX WITH NLA IN A SECONDARY REMARK 900 BINDING SITE REMARK 900 RELATED ID: 4Z9B RELATED DB: PDB REMARK 900 RELATED ID: 4Z99 RELATED DB: PDB DBREF 4Z9A A 0 157 UNP P24666 PPAC_HUMAN 1 158 SEQADV 4Z9A GLY A -6 UNP P24666 EXPRESSION TAG SEQADV 4Z9A SER A -5 UNP P24666 EXPRESSION TAG SEQADV 4Z9A HIS A -4 UNP P24666 EXPRESSION TAG SEQADV 4Z9A MET A -3 UNP P24666 EXPRESSION TAG SEQADV 4Z9A GLU A -2 UNP P24666 EXPRESSION TAG SEQADV 4Z9A PHE A -1 UNP P24666 EXPRESSION TAG SEQRES 1 A 164 GLY SER HIS MET GLU PHE MET ALA GLU GLN ALA THR LYS SEQRES 2 A 164 SER VAL LEU PHE VAL CYS LEU GLY ASN ILE CYS ARG SER SEQRES 3 A 164 PRO ILE ALA GLU ALA VAL PHE ARG LYS LEU VAL THR ASP SEQRES 4 A 164 GLN ASN ILE SER GLU ASN TRP ARG VAL ASP SER ALA ALA SEQRES 5 A 164 THR SER GLY TYR GLU ILE GLY ASN PRO PRO ASP TYR ARG SEQRES 6 A 164 GLY GLN SER CYS MET LYS ARG HIS GLY ILE PRO MET SER SEQRES 7 A 164 HIS VAL ALA ARG GLN ILE THR LYS GLU ASP PHE ALA THR SEQRES 8 A 164 PHE ASP TYR ILE LEU CYS MET ASP GLU SER ASN LEU ARG SEQRES 9 A 164 ASP LEU ASN ARG LYS SER ASN GLN VAL LYS THR CYS LYS SEQRES 10 A 164 ALA LYS ILE GLU LEU LEU GLY SER TYR ASP PRO GLN LYS SEQRES 11 A 164 GLN LEU ILE ILE GLU ASP PRO TYR TYR GLY ASN ASP SER SEQRES 12 A 164 ASP PHE GLU THR VAL TYR GLN GLN CYS VAL ARG CYS CYS SEQRES 13 A 164 ARG ALA PHE LEU GLU LYS ALA HIS HET GOL A 301 6 HET SO4 A 302 5 HET SO4 A 303 5 HET PMS A 304 11 HETNAM GOL GLYCEROL HETNAM SO4 SULFATE ION HETNAM PMS PHENYLMETHANESULFONIC ACID HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 2 GOL C3 H8 O3 FORMUL 3 SO4 2(O4 S 2-) FORMUL 5 PMS C7 H8 O3 S FORMUL 6 HOH *88(H2 O) HELIX 1 AA1 CYS A 17 GLN A 33 1 17 HELIX 2 AA2 ILE A 35 GLU A 37 5 3 HELIX 3 AA3 ASP A 56 HIS A 66 1 11 HELIX 4 AA4 THR A 78 PHE A 85 1 8 HELIX 5 AA5 ASP A 92 ASN A 104 1 13 HELIX 6 AA6 GLY A 117 ASP A 120 5 4 HELIX 7 AA7 ASN A 134 LYS A 155 1 22 SHEET 1 AA1 4 TRP A 39 ALA A 45 0 SHEET 2 AA1 4 LYS A 6 CYS A 12 1 N LYS A 6 O ARG A 40 SHEET 3 AA1 4 TYR A 87 CYS A 90 1 O LEU A 89 N VAL A 11 SHEET 4 AA1 4 LYS A 112 LEU A 115 1 O LYS A 112 N ILE A 88 SITE 1 AC1 6 TYR A 49 LYS A 64 ASP A 92 GLU A 93 SITE 2 AC1 6 SER A 94 ARG A 97 SITE 1 AC2 5 ARG A 101 LYS A 102 GLN A 105 HOH A 407 SITE 2 AC2 5 HOH A 454 SITE 1 AC3 6 ARG A 27 TRP A 39 ARG A 40 VAL A 41 SITE 2 AC3 6 HOH A 428 HOH A 452 SITE 1 AC4 10 CYS A 12 LEU A 13 GLY A 14 ASN A 15 SITE 2 AC4 10 ILE A 16 CYS A 17 ARG A 18 ARG A 97 SITE 3 AC4 10 ASP A 129 HOH A 401 CRYST1 32.750 55.230 97.800 90.00 90.00 90.00 P 21 21 21 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.030534 0.000000 0.000000 0.00000 SCALE2 0.000000 0.018106 0.000000 0.00000 SCALE3 0.000000 0.000000 0.010225 0.00000