HEADER TRANSFERASE 10-APR-15 4Z9D TITLE ECPLTA COMPND MOL_ID: 1; COMPND 2 MOLECULE: PERTUSSIS TOXIN-LIKE SUBUNIT ARTA; COMPND 3 CHAIN: A, B, C, D; COMPND 4 FRAGMENT: UNP RESIDUES 19-190; COMPND 5 SYNONYM: PERTUSSIS TOXIN-LIKE SUBUNIT PLTA; COMPND 6 EC: 2.2.2.30; COMPND 7 ENGINEERED: YES; COMPND 8 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ESCHERICHIA COLI; SOURCE 3 ORGANISM_TAXID: 562; SOURCE 4 STRAIN: PA26B; SOURCE 5 GENE: PU15_14675, PU38_26245; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PET28-NKI KEYWDS UTEC, ESCHERICHIA COLI, PERTUSSIS LIKE, MEMBRANE GLYCOPROTEINS, KEYWDS 2 TOXIN, AB5, PERTUSSIS TOXIN, TYPHOID TOXIN, PLT, PLTAB, PLTA, KEYWDS 3 RIBOSYLTRANSFERASE, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR D.R.LITTLER,M.D.JOHNSON,R.J.SUMMERS,M.A.SCHEMBRI,J.ROSSJOHN,T.BEDDOE REVDAT 3 27-SEP-23 4Z9D 1 LINK REVDAT 2 09-AUG-17 4Z9D 1 JRNL REMARK REVDAT 1 12-OCT-16 4Z9D 0 JRNL AUTH D.R.LITTLER,S.Y.ANG,D.G.MORIEL,M.KOCAN,O.KLEIFELD, JRNL AUTH 2 M.D.JOHNSON,M.T.TRAN,A.W.PATON,J.C.PATON,R.SUMMERS, JRNL AUTH 3 M.SCHREMBRI,J.ROSSJOHN,T.T.BEDDOE JRNL TITL STRUCTURE AND FUNCTION ANALYSES OF A PERTUSSIS-LIKE TOXIN JRNL TITL 2 FROM PATHOGENIC ESCHERICHIA COLI REVEAL A DISTINCT MECHANISM JRNL TITL 3 OF INHIBITION OF TRIMERIC G PROTEINS. JRNL REF J. BIOL. CHEM. 2017 JRNL REFN ESSN 1083-351X JRNL PMID 28663369 JRNL DOI 10.1074/JBC.M117.796094 REMARK 2 REMARK 2 RESOLUTION. 1.80 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.8.2_1309 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.80 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 35.89 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.970 REMARK 3 COMPLETENESS FOR RANGE (%) : 88.5 REMARK 3 NUMBER OF REFLECTIONS : 55466 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.183 REMARK 3 R VALUE (WORKING SET) : 0.181 REMARK 3 FREE R VALUE : 0.227 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.080 REMARK 3 FREE R VALUE TEST SET COUNT : 2818 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 35.9011 - 4.8821 0.85 2517 143 0.1623 0.1768 REMARK 3 2 4.8821 - 3.8765 0.83 2478 137 0.1456 0.1720 REMARK 3 3 3.8765 - 3.3869 0.84 2479 146 0.1542 0.2043 REMARK 3 4 3.3869 - 3.0774 0.87 2588 147 0.1762 0.2209 REMARK 3 5 3.0774 - 2.8570 0.88 2635 137 0.1919 0.2360 REMARK 3 6 2.8570 - 2.6886 0.89 2628 137 0.1947 0.2583 REMARK 3 7 2.6886 - 2.5540 0.89 2671 139 0.1926 0.2586 REMARK 3 8 2.5540 - 2.4428 0.90 2666 128 0.1769 0.2249 REMARK 3 9 2.4428 - 2.3488 0.90 2674 135 0.1730 0.2098 REMARK 3 10 2.3488 - 2.2678 0.91 2748 135 0.1759 0.2394 REMARK 3 11 2.2678 - 2.1969 0.90 2687 137 0.1767 0.2355 REMARK 3 12 2.1969 - 2.1341 0.90 2681 143 0.1801 0.2231 REMARK 3 13 2.1341 - 2.0779 0.91 2721 144 0.1858 0.2505 REMARK 3 14 2.0779 - 2.0272 0.90 2676 132 0.1808 0.2454 REMARK 3 15 2.0272 - 1.9811 0.90 2682 147 0.1918 0.2230 REMARK 3 16 1.9811 - 1.9390 0.89 2644 156 0.1998 0.2301 REMARK 3 17 1.9390 - 1.9002 0.89 2659 158 0.2148 0.2732 REMARK 3 18 1.9002 - 1.8643 0.89 2609 146 0.2266 0.2883 REMARK 3 19 1.8643 - 1.8310 0.88 2614 135 0.2482 0.3261 REMARK 3 20 1.8310 - 1.8000 0.87 2591 136 0.2611 0.3155 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.200 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 23.420 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 10.60 REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.007 5926 REMARK 3 ANGLE : 1.179 8085 REMARK 3 CHIRALITY : 0.052 861 REMARK 3 PLANARITY : 0.006 1067 REMARK 3 DIHEDRAL : 16.385 2368 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4Z9D COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 14-APR-15. REMARK 100 THE DEPOSITION ID IS D_1000208824. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 30-OCT-13 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.5 REMARK 200 NUMBER OF CRYSTALS USED : NULL REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : AUSTRALIAN SYNCHROTRON REMARK 200 BEAMLINE : MX2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.95370 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : IMOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 55479 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.800 REMARK 200 RESOLUTION RANGE LOW (A) : 70.800 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 88.5 REMARK 200 DATA REDUNDANCY : 1.700 REMARK 200 R MERGE (I) : 0.06600 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 7.7000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.80 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.90 REMARK 200 COMPLETENESS FOR SHELL (%) : 87.7 REMARK 200 DATA REDUNDANCY IN SHELL : 1.60 REMARK 200 R MERGE FOR SHELL (I) : 0.30000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.600 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: PDB ENTRY 4Z9C REMARK 200 REMARK 200 REMARK: CLUSTERS OF PLATE-LIKE CRYSTALS THAT GREW WITHIN 2-3 DAYS REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 44.30 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.21 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: TREATED WITH 20 MM NAD+ FOR THIRTY REMARK 280 MINUTES PRIOR TO CRYSTALLIZATION, 1:1 PROTEIN TO 4-7% PEG, 0.1 M REMARK 280 TRIS, PH 8.5, 0.15 M LITHIUM SULFATE, VAPOR DIFFUSION, HANGING REMARK 280 DROP, TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2, 3, 4, 5, 6 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 3 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 4 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 5 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 4030 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 16850 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -27.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 6 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 4120 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 17180 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -22.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: B, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 THR A 175 REMARK 465 GLY B 1 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 385 O HOH A 412 2.03 REMARK 500 OE2 GLU A 16 O HOH A 301 2.07 REMARK 500 O HOH A 305 O HOH B 401 2.08 REMARK 500 O HOH D 331 O HOH D 417 2.09 REMARK 500 NH1 ARG C 13 O HOH C 301 2.14 REMARK 500 OE2 GLU D 16 O HOH D 301 2.19 REMARK 500 O HOH A 376 O HOH A 438 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ARG A 30 31.97 -94.65 REMARK 500 ASP A 47 13.35 -140.24 REMARK 500 ASN A 85 -157.36 -143.27 REMARK 500 GLU A 123 -55.98 69.71 REMARK 500 ARG B 30 34.39 -95.82 REMARK 500 CYS B 41 -162.56 -101.51 REMARK 500 ASP B 47 15.21 -141.15 REMARK 500 ASN B 85 -156.99 -144.84 REMARK 500 GLU B 123 -49.72 68.46 REMARK 500 ARG C 30 31.83 -95.05 REMARK 500 CYS C 41 -159.29 -100.67 REMARK 500 ASP C 47 14.45 -140.16 REMARK 500 ASN C 85 -158.89 -141.35 REMARK 500 GLU C 123 -55.36 68.94 REMARK 500 ARG D 30 32.16 -92.87 REMARK 500 CYS D 41 -158.87 -99.79 REMARK 500 ASP D 47 11.91 -140.72 REMARK 500 ASN D 85 -157.55 -141.91 REMARK 500 GLU D 123 -54.80 69.00 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 442 DISTANCE = 5.84 ANGSTROMS REMARK 525 HOH B 452 DISTANCE = 5.83 ANGSTROMS REMARK 525 HOH B 453 DISTANCE = 5.96 ANGSTROMS REMARK 525 HOH B 454 DISTANCE = 6.32 ANGSTROMS REMARK 525 HOH B 455 DISTANCE = 7.08 ANGSTROMS REMARK 525 HOH D 463 DISTANCE = 5.84 ANGSTROMS REMARK 525 HOH D 464 DISTANCE = 5.92 ANGSTROMS REMARK 525 HOH D 465 DISTANCE = 6.11 ANGSTROMS REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA A 201 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH A 381 O REMARK 620 2 HOH A 393 O 89.3 REMARK 620 3 HOH A 402 O 91.4 92.6 REMARK 620 4 HOH D 370 O 83.8 170.9 81.7 REMARK 620 5 HOH D 409 O 80.7 93.3 170.1 91.4 REMARK 620 6 HOH D 421 O 170.2 90.3 98.4 97.5 89.6 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA B 201 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH B 343 O REMARK 620 2 HOH B 370 O 90.8 REMARK 620 3 HOH B 400 O 89.7 91.3 REMARK 620 4 HOH C 355 O 169.5 87.3 80.0 REMARK 620 5 HOH C 375 O 103.3 82.2 165.5 86.7 REMARK 620 6 HOH C 392 O 94.3 174.3 91.5 88.2 94.0 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue NA A 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue NAD A 202 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue NA B 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue NAD B 202 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue NAD C 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue NAD D 201 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4Z9C RELATED DB: PDB DBREF1 4Z9D A 4 175 UNP A0A0B1KWV6_ECOLX DBREF2 4Z9D A A0A0B1KWV6 19 190 DBREF1 4Z9D B 4 175 UNP A0A0B1KWV6_ECOLX DBREF2 4Z9D B A0A0B1KWV6 19 190 DBREF1 4Z9D C 4 175 UNP A0A0B1KWV6_ECOLX DBREF2 4Z9D C A0A0B1KWV6 19 190 DBREF1 4Z9D D 4 175 UNP A0A0B1KWV6_ECOLX DBREF2 4Z9D D A0A0B1KWV6 19 190 SEQADV 4Z9D GLY A 1 UNP A0A0B1KWV EXPRESSION TAG SEQADV 4Z9D PRO A 2 UNP A0A0B1KWV EXPRESSION TAG SEQADV 4Z9D GLY A 3 UNP A0A0B1KWV EXPRESSION TAG SEQADV 4Z9D ASP A 116 UNP A0A0B1KWV GLN 131 ENGINEERED MUTATION SEQADV 4Z9D ASP A 118 UNP A0A0B1KWV GLU 133 ENGINEERED MUTATION SEQADV 4Z9D GLY B 1 UNP A0A0B1KWV EXPRESSION TAG SEQADV 4Z9D PRO B 2 UNP A0A0B1KWV EXPRESSION TAG SEQADV 4Z9D GLY B 3 UNP A0A0B1KWV EXPRESSION TAG SEQADV 4Z9D ASP B 116 UNP A0A0B1KWV GLN 131 ENGINEERED MUTATION SEQADV 4Z9D ASP B 118 UNP A0A0B1KWV GLU 133 ENGINEERED MUTATION SEQADV 4Z9D GLY C 1 UNP A0A0B1KWV EXPRESSION TAG SEQADV 4Z9D PRO C 2 UNP A0A0B1KWV EXPRESSION TAG SEQADV 4Z9D GLY C 3 UNP A0A0B1KWV EXPRESSION TAG SEQADV 4Z9D ASP C 116 UNP A0A0B1KWV GLN 131 ENGINEERED MUTATION SEQADV 4Z9D ASP C 118 UNP A0A0B1KWV GLU 133 ENGINEERED MUTATION SEQADV 4Z9D GLY D 1 UNP A0A0B1KWV EXPRESSION TAG SEQADV 4Z9D PRO D 2 UNP A0A0B1KWV EXPRESSION TAG SEQADV 4Z9D GLY D 3 UNP A0A0B1KWV EXPRESSION TAG SEQADV 4Z9D ASP D 116 UNP A0A0B1KWV GLN 131 ENGINEERED MUTATION SEQADV 4Z9D ASP D 118 UNP A0A0B1KWV GLU 133 ENGINEERED MUTATION SEQRES 1 A 175 GLY PRO GLY THR ASP PHE VAL TYR ARG VAL ASP SER ARG SEQRES 2 A 175 PRO PRO GLU GLU ILE PHE ARG ASP GLY PHE ARG SER HIS SEQRES 3 A 175 GLY PHE ASN ARG ASN LEU GLN GLN HIS LEU ARG GLY ASP SEQRES 4 A 175 SER CYS ALA ALA GLY SER ARG ASP SER ALA PHE ILE ALA SEQRES 5 A 175 THR THR THR SER LEU ILE GLU THR TYR ASN ILE ALA ARG SEQRES 6 A 175 GLN TYR TYR SER SER SER GLY PHE HIS GLY ARG LEU TYR SEQRES 7 A 175 ARG TYR ARG ILE ARG ALA ASN ASN ILE PHE TYR PRO ILE SEQRES 8 A 175 GLN PRO SER VAL ASN TYR LEU THR GLN ARG GLY ILE THR SEQRES 9 A 175 PHE SER GLY PHE GLU ARG ILE MET MET ARG GLU ASP ASN SEQRES 10 A 175 ASP ILE VAL ALA VAL GLU HIS ILE PRO GLY GLU ASN ILE SEQRES 11 A 175 VAL GLU ALA VAL GLU LEU THR TYR ASP ARG PHE ASN SER SEQRES 12 A 175 GLN VAL SER ASP GLY PRO GLY THR THR ASN ALA ARG TYR SEQRES 13 A 175 VAL PRO GLY SER THR PHE VAL ASN PRO GLY VAL ILE PRO SEQRES 14 A 175 GLN LEU VAL VAL PRO THR SEQRES 1 B 175 GLY PRO GLY THR ASP PHE VAL TYR ARG VAL ASP SER ARG SEQRES 2 B 175 PRO PRO GLU GLU ILE PHE ARG ASP GLY PHE ARG SER HIS SEQRES 3 B 175 GLY PHE ASN ARG ASN LEU GLN GLN HIS LEU ARG GLY ASP SEQRES 4 B 175 SER CYS ALA ALA GLY SER ARG ASP SER ALA PHE ILE ALA SEQRES 5 B 175 THR THR THR SER LEU ILE GLU THR TYR ASN ILE ALA ARG SEQRES 6 B 175 GLN TYR TYR SER SER SER GLY PHE HIS GLY ARG LEU TYR SEQRES 7 B 175 ARG TYR ARG ILE ARG ALA ASN ASN ILE PHE TYR PRO ILE SEQRES 8 B 175 GLN PRO SER VAL ASN TYR LEU THR GLN ARG GLY ILE THR SEQRES 9 B 175 PHE SER GLY PHE GLU ARG ILE MET MET ARG GLU ASP ASN SEQRES 10 B 175 ASP ILE VAL ALA VAL GLU HIS ILE PRO GLY GLU ASN ILE SEQRES 11 B 175 VAL GLU ALA VAL GLU LEU THR TYR ASP ARG PHE ASN SER SEQRES 12 B 175 GLN VAL SER ASP GLY PRO GLY THR THR ASN ALA ARG TYR SEQRES 13 B 175 VAL PRO GLY SER THR PHE VAL ASN PRO GLY VAL ILE PRO SEQRES 14 B 175 GLN LEU VAL VAL PRO THR SEQRES 1 C 175 GLY PRO GLY THR ASP PHE VAL TYR ARG VAL ASP SER ARG SEQRES 2 C 175 PRO PRO GLU GLU ILE PHE ARG ASP GLY PHE ARG SER HIS SEQRES 3 C 175 GLY PHE ASN ARG ASN LEU GLN GLN HIS LEU ARG GLY ASP SEQRES 4 C 175 SER CYS ALA ALA GLY SER ARG ASP SER ALA PHE ILE ALA SEQRES 5 C 175 THR THR THR SER LEU ILE GLU THR TYR ASN ILE ALA ARG SEQRES 6 C 175 GLN TYR TYR SER SER SER GLY PHE HIS GLY ARG LEU TYR SEQRES 7 C 175 ARG TYR ARG ILE ARG ALA ASN ASN ILE PHE TYR PRO ILE SEQRES 8 C 175 GLN PRO SER VAL ASN TYR LEU THR GLN ARG GLY ILE THR SEQRES 9 C 175 PHE SER GLY PHE GLU ARG ILE MET MET ARG GLU ASP ASN SEQRES 10 C 175 ASP ILE VAL ALA VAL GLU HIS ILE PRO GLY GLU ASN ILE SEQRES 11 C 175 VAL GLU ALA VAL GLU LEU THR TYR ASP ARG PHE ASN SER SEQRES 12 C 175 GLN VAL SER ASP GLY PRO GLY THR THR ASN ALA ARG TYR SEQRES 13 C 175 VAL PRO GLY SER THR PHE VAL ASN PRO GLY VAL ILE PRO SEQRES 14 C 175 GLN LEU VAL VAL PRO THR SEQRES 1 D 175 GLY PRO GLY THR ASP PHE VAL TYR ARG VAL ASP SER ARG SEQRES 2 D 175 PRO PRO GLU GLU ILE PHE ARG ASP GLY PHE ARG SER HIS SEQRES 3 D 175 GLY PHE ASN ARG ASN LEU GLN GLN HIS LEU ARG GLY ASP SEQRES 4 D 175 SER CYS ALA ALA GLY SER ARG ASP SER ALA PHE ILE ALA SEQRES 5 D 175 THR THR THR SER LEU ILE GLU THR TYR ASN ILE ALA ARG SEQRES 6 D 175 GLN TYR TYR SER SER SER GLY PHE HIS GLY ARG LEU TYR SEQRES 7 D 175 ARG TYR ARG ILE ARG ALA ASN ASN ILE PHE TYR PRO ILE SEQRES 8 D 175 GLN PRO SER VAL ASN TYR LEU THR GLN ARG GLY ILE THR SEQRES 9 D 175 PHE SER GLY PHE GLU ARG ILE MET MET ARG GLU ASP ASN SEQRES 10 D 175 ASP ILE VAL ALA VAL GLU HIS ILE PRO GLY GLU ASN ILE SEQRES 11 D 175 VAL GLU ALA VAL GLU LEU THR TYR ASP ARG PHE ASN SER SEQRES 12 D 175 GLN VAL SER ASP GLY PRO GLY THR THR ASN ALA ARG TYR SEQRES 13 D 175 VAL PRO GLY SER THR PHE VAL ASN PRO GLY VAL ILE PRO SEQRES 14 D 175 GLN LEU VAL VAL PRO THR HET NA A 201 1 HET NAD A 202 44 HET NA B 201 1 HET NAD B 202 44 HET NAD C 201 44 HET NAD D 201 44 HETNAM NA SODIUM ION HETNAM NAD NICOTINAMIDE-ADENINE-DINUCLEOTIDE FORMUL 5 NA 2(NA 1+) FORMUL 6 NAD 4(C21 H27 N7 O14 P2) FORMUL 11 HOH *598(H2 O) HELIX 1 AA1 PRO A 14 GLY A 22 1 9 HELIX 2 AA2 ASN A 31 GLY A 38 1 8 HELIX 3 AA3 SER A 56 SER A 69 1 14 HELIX 4 AA4 ILE A 91 ARG A 101 1 11 HELIX 5 AA5 SER A 106 MET A 113 1 8 HELIX 6 AA6 PRO A 126 GLU A 128 5 3 HELIX 7 AA7 PRO B 14 GLY B 22 1 9 HELIX 8 AA8 ASN B 31 ARG B 37 1 7 HELIX 9 AA9 SER B 56 SER B 69 1 14 HELIX 10 AB1 ILE B 91 ARG B 101 1 11 HELIX 11 AB2 SER B 106 ARG B 114 1 9 HELIX 12 AB3 PRO B 126 GLU B 128 5 3 HELIX 13 AB4 PRO C 14 GLY C 22 1 9 HELIX 14 AB5 ASN C 31 GLY C 38 1 8 HELIX 15 AB6 SER C 56 SER C 69 1 14 HELIX 16 AB7 ILE C 91 ARG C 101 1 11 HELIX 17 AB8 SER C 106 MET C 113 1 8 HELIX 18 AB9 PRO C 126 GLU C 128 5 3 HELIX 19 AC1 PRO D 14 GLY D 22 1 9 HELIX 20 AC2 ASN D 31 GLY D 38 1 8 HELIX 21 AC3 SER D 56 SER D 69 1 14 HELIX 22 AC4 ILE D 91 ARG D 101 1 11 HELIX 23 AC5 SER D 106 ARG D 114 1 9 HELIX 24 AC6 PRO D 126 GLU D 128 5 3 SHEET 1 AA1 4 PHE A 6 ASP A 11 0 SHEET 2 AA1 4 LEU A 77 ARG A 83 -1 O ILE A 82 N VAL A 7 SHEET 3 AA1 4 ILE A 130 ASP A 139 -1 O LEU A 136 N LEU A 77 SHEET 4 AA1 4 GLN A 144 THR A 152 -1 O GLY A 148 N GLU A 135 SHEET 1 AA2 2 PHE A 23 ARG A 24 0 SHEET 2 AA2 2 HIS A 124 ILE A 125 -1 O ILE A 125 N PHE A 23 SHEET 1 AA3 3 PHE A 50 THR A 54 0 SHEET 2 AA3 3 ASP A 118 VAL A 122 -1 O ALA A 121 N ILE A 51 SHEET 3 AA3 3 PHE A 88 PRO A 90 -1 N TYR A 89 O VAL A 120 SHEET 1 AA4 4 PHE B 6 ASP B 11 0 SHEET 2 AA4 4 LEU B 77 ARG B 83 -1 O ILE B 82 N VAL B 7 SHEET 3 AA4 4 ILE B 130 ASP B 139 -1 O VAL B 134 N ARG B 79 SHEET 4 AA4 4 GLN B 144 THR B 152 -1 O GLY B 148 N GLU B 135 SHEET 1 AA5 2 PHE B 23 ARG B 24 0 SHEET 2 AA5 2 HIS B 124 ILE B 125 -1 O ILE B 125 N PHE B 23 SHEET 1 AA6 3 PHE B 50 THR B 54 0 SHEET 2 AA6 3 ASP B 118 VAL B 122 -1 O ALA B 121 N ILE B 51 SHEET 3 AA6 3 PHE B 88 PRO B 90 -1 N TYR B 89 O VAL B 120 SHEET 1 AA7 4 PHE C 6 ASP C 11 0 SHEET 2 AA7 4 LEU C 77 ARG C 83 -1 O ILE C 82 N VAL C 7 SHEET 3 AA7 4 ILE C 130 ASP C 139 -1 O VAL C 134 N ARG C 79 SHEET 4 AA7 4 GLN C 144 THR C 152 -1 O GLY C 148 N GLU C 135 SHEET 1 AA8 2 PHE C 23 ARG C 24 0 SHEET 2 AA8 2 HIS C 124 ILE C 125 -1 O ILE C 125 N PHE C 23 SHEET 1 AA9 3 PHE C 50 THR C 54 0 SHEET 2 AA9 3 ASP C 118 VAL C 122 -1 O ALA C 121 N ILE C 51 SHEET 3 AA9 3 PHE C 88 PRO C 90 -1 N TYR C 89 O VAL C 120 SHEET 1 AB1 4 PHE D 6 ASP D 11 0 SHEET 2 AB1 4 LEU D 77 ARG D 83 -1 O ILE D 82 N VAL D 7 SHEET 3 AB1 4 ILE D 130 ASP D 139 -1 O LEU D 136 N LEU D 77 SHEET 4 AB1 4 GLN D 144 THR D 152 -1 O GLY D 148 N GLU D 135 SHEET 1 AB2 2 PHE D 23 ARG D 24 0 SHEET 2 AB2 2 HIS D 124 ILE D 125 -1 O ILE D 125 N PHE D 23 SHEET 1 AB3 3 PHE D 50 THR D 54 0 SHEET 2 AB3 3 ASP D 118 VAL D 122 -1 O ALA D 121 N ILE D 51 SHEET 3 AB3 3 PHE D 88 PRO D 90 -1 N TYR D 89 O VAL D 120 LINK NA NA A 201 O HOH A 381 1555 1555 2.45 LINK NA NA A 201 O HOH A 393 1555 1555 2.77 LINK NA NA A 201 O HOH A 402 1555 1555 2.37 LINK NA NA A 201 O HOH D 370 1555 1555 2.43 LINK NA NA A 201 O HOH D 409 1555 1555 2.50 LINK NA NA A 201 O HOH D 421 1555 1555 2.75 LINK NA NA B 201 O HOH B 343 1555 1555 2.81 LINK NA NA B 201 O HOH B 370 1555 1555 2.44 LINK NA NA B 201 O HOH B 400 1555 1555 2.57 LINK NA NA B 201 O HOH C 355 1555 1555 2.56 LINK NA NA B 201 O HOH C 375 1555 1555 2.47 LINK NA NA B 201 O HOH C 392 1555 1555 3.16 SITE 1 AC1 6 HOH A 381 HOH A 393 HOH A 402 HOH D 370 SITE 2 AC1 6 HOH D 409 HOH D 421 SITE 1 AC2 22 ARG A 9 VAL A 10 ASP A 11 SER A 12 SITE 2 AC2 22 ARG A 13 ARG A 24 SER A 25 HIS A 26 SITE 3 AC2 22 HIS A 35 LEU A 36 GLY A 38 CYS A 41 SITE 4 AC2 22 ALA A 42 ALA A 52 THR A 53 ILE A 63 SITE 5 AC2 22 TYR A 67 HOH A 310 HOH A 335 HOH A 337 SITE 6 AC2 22 HOH A 341 HOH A 366 SITE 1 AC3 5 HOH B 343 HOH B 370 HOH B 400 HOH C 355 SITE 2 AC3 5 HOH C 375 SITE 1 AC4 20 ARG B 9 VAL B 10 ASP B 11 SER B 12 SITE 2 AC4 20 ARG B 13 ARG B 24 SER B 25 HIS B 26 SITE 3 AC4 20 HIS B 35 LEU B 36 GLY B 38 CYS B 41 SITE 4 AC4 20 ALA B 42 ALA B 52 ILE B 63 TYR B 67 SITE 5 AC4 20 HOH B 316 HOH B 338 HOH B 346 HOH B 372 SITE 1 AC5 18 ARG C 9 VAL C 10 ASP C 11 SER C 12 SITE 2 AC5 18 ARG C 13 ARG C 24 SER C 25 HIS C 26 SITE 3 AC5 18 HIS C 35 LEU C 36 CYS C 41 ALA C 42 SITE 4 AC5 18 ALA C 52 ILE C 63 TYR C 67 HOH C 312 SITE 5 AC5 18 HOH C 322 HOH C 358 SITE 1 AC6 20 ARG D 9 VAL D 10 SER D 12 HIS D 26 SITE 2 AC6 20 HIS D 35 LEU D 36 GLY D 38 ALA D 42 SITE 3 AC6 20 ALA D 52 ILE D 63 TYR D 67 SER D 70 SITE 4 AC6 20 PHE D 73 ASP D 118 HOH D 346 HOH D 354 SITE 5 AC6 20 HOH D 379 HOH D 381 HOH D 390 HOH D 405 CRYST1 44.520 55.660 73.060 90.06 104.07 96.17 P 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.022462 0.002428 0.005700 0.00000 SCALE2 0.000000 0.018071 0.000509 0.00000 SCALE3 0.000000 0.000000 0.014116 0.00000