HEADER HYDROLASE/IMMUNE SYSTEM 10-APR-15 4Z9K TITLE RICIN A CHAIN BOUND TO CAMELID NANOBODY (VHH2)(F5) COMPND MOL_ID: 1; COMPND 2 MOLECULE: RICIN; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: UNP RESIDUES 39-296; COMPND 5 EC: 3.2.2.22; COMPND 6 ENGINEERED: YES; COMPND 7 MOL_ID: 2; COMPND 8 MOLECULE: VHH2(F5) ANTIBODY; COMPND 9 CHAIN: B; COMPND 10 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: RICINUS COMMUNIS; SOURCE 3 ORGANISM_COMMON: CASTOR BEAN; SOURCE 4 ORGANISM_TAXID: 3988; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 8 MOL_ID: 2; SOURCE 9 ORGANISM_SCIENTIFIC: VICUGNA PACOS; SOURCE 10 ORGANISM_COMMON: ALPACA; SOURCE 11 ORGANISM_TAXID: 30538; SOURCE 12 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 13 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS RICIN TOXIN, NANOBODIES, HYDROLASE-IMMUNE SYSTEM COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR M.J.RUDOLPH REVDAT 4 11-DEC-19 4Z9K 1 REMARK REVDAT 3 13-SEP-17 4Z9K 1 REMARK REVDAT 2 12-APR-17 4Z9K 1 COMPND SOURCE JRNL REVDAT 1 20-JUL-16 4Z9K 0 JRNL AUTH M.J.RUDOLPH,D.J.VANCE,M.S.CASSIDY,Y.RONG,C.B.SHOEMAKER, JRNL AUTH 2 N.J.MANTIS JRNL TITL STRUCTURAL ANALYSIS OF NESTED NEUTRALIZING AND JRNL TITL 2 NON-NEUTRALIZING B CELL EPITOPES ON RICIN TOXIN'S ENZYMATIC JRNL TITL 3 SUBUNIT. JRNL REF PROTEINS V. 84 1162 2016 JRNL REFN ESSN 1097-0134 JRNL PMID 27159829 JRNL DOI 10.1002/PROT.25062 REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH M.J.RUDOLPH,D.J.VANCE,J.CHEUNG,M.C.FRANKLIN,F.BURSHTEYN, REMARK 1 AUTH 2 M.S.CASSIDY,E.N.GARY,C.HERRERA,C.B.SHOEMAKER,N.J.MANTIS REMARK 1 TITL CRYSTAL STRUCTURES OF RICIN TOXIN'S ENZYMATIC SUBUNIT (RTA) REMARK 1 TITL 2 IN COMPLEX WITH NEUTRALIZING AND NON-NEUTRALIZING REMARK 1 TITL 3 SINGLE-CHAIN ANTIBODIES. REMARK 1 REF TO BE PUBLISHED REMARK 1 REFN REMARK 2 REMARK 2 RESOLUTION. 1.50 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.50 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 55.07 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 0.060 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.6 REMARK 3 NUMBER OF REFLECTIONS : 75015 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.179 REMARK 3 R VALUE (WORKING SET) : 0.178 REMARK 3 FREE R VALUE : 0.195 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.990 REMARK 3 FREE R VALUE TEST SET COUNT : 3741 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 55.1023 - 4.6599 1.00 4638 229 0.1548 0.1703 REMARK 3 2 4.6599 - 3.6990 1.00 4579 234 0.1375 0.1452 REMARK 3 3 3.6990 - 3.2315 1.00 4639 254 0.1544 0.1692 REMARK 3 4 3.2315 - 2.9360 1.00 4576 277 0.1746 0.1829 REMARK 3 5 2.9360 - 2.7256 1.00 4629 247 0.1711 0.1976 REMARK 3 6 2.7256 - 2.5649 1.00 4599 256 0.1683 0.1990 REMARK 3 7 2.5649 - 2.4364 1.00 4596 235 0.1675 0.2141 REMARK 3 8 2.4364 - 2.3304 1.00 4607 265 0.1666 0.1668 REMARK 3 9 2.3304 - 2.2407 1.00 4597 232 0.1623 0.1875 REMARK 3 10 2.2407 - 2.1633 1.00 4687 185 0.1632 0.1603 REMARK 3 11 2.1633 - 2.0957 1.00 4602 262 0.1663 0.1841 REMARK 3 12 2.0957 - 2.0358 1.00 4577 250 0.1734 0.2040 REMARK 3 13 2.0358 - 1.9822 1.00 4649 215 0.1746 0.1945 REMARK 3 14 1.9822 - 1.9338 1.00 4642 208 0.1770 0.1809 REMARK 3 15 1.9338 - 1.8899 1.00 4554 273 0.1867 0.2043 REMARK 3 16 1.8899 - 1.8496 1.00 4595 230 0.1977 0.2237 REMARK 3 17 1.8496 - 1.8126 1.00 4631 248 0.2037 0.2240 REMARK 3 18 1.8126 - 1.7784 1.00 4596 248 0.2087 0.2414 REMARK 3 19 1.7784 - 1.7467 1.00 4536 230 0.2180 0.2278 REMARK 3 20 1.7467 - 1.7171 0.99 4650 251 0.2255 0.2605 REMARK 3 21 1.7171 - 1.6894 0.99 4544 242 0.2425 0.2706 REMARK 3 22 1.6894 - 1.6634 1.00 4592 246 0.2489 0.2654 REMARK 3 23 1.6634 - 1.6389 0.99 4596 263 0.2553 0.2659 REMARK 3 24 1.6389 - 1.6158 0.99 4565 230 0.2691 0.2619 REMARK 3 25 1.6158 - 1.5940 0.99 4606 236 0.2794 0.3070 REMARK 3 26 1.5940 - 1.5733 0.99 4530 245 0.2874 0.3216 REMARK 3 27 1.5733 - 1.5536 0.99 4555 264 0.2911 0.2972 REMARK 3 28 1.5536 - 1.5349 0.99 4596 221 0.2950 0.3073 REMARK 3 29 1.5349 - 1.5170 0.98 4585 232 0.3131 0.3214 REMARK 3 30 1.5170 - 1.5000 0.99 4538 239 0.3290 0.3534 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.170 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 21.520 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 18.56 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 27.81 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.019 3029 REMARK 3 ANGLE : 1.682 4117 REMARK 3 CHIRALITY : 0.101 455 REMARK 3 PLANARITY : 0.010 543 REMARK 3 DIHEDRAL : 13.933 1108 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 1 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: ALL REMARK 3 ORIGIN FOR THE GROUP (A): 32.9217 37.2273 2.2663 REMARK 3 T TENSOR REMARK 3 T11: 0.1136 T22: 0.1020 REMARK 3 T33: 0.1503 T12: -0.0089 REMARK 3 T13: -0.0074 T23: -0.0026 REMARK 3 L TENSOR REMARK 3 L11: 1.4188 L22: 0.8142 REMARK 3 L33: 2.4481 L12: 0.1783 REMARK 3 L13: 0.0210 L23: -0.2075 REMARK 3 S TENSOR REMARK 3 S11: 0.0256 S12: -0.1115 S13: -0.0751 REMARK 3 S21: 0.0161 S22: 0.0057 S23: 0.0208 REMARK 3 S31: 0.1295 S32: -0.2324 S33: -0.0263 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4Z9K COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 22-APR-15. REMARK 100 THE DEPOSITION ID IS D_1000208872. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 27-FEB-15 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 24-ID-E REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.98 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : AIMLESS 0.3.3 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 75050 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.500 REMARK 200 RESOLUTION RANGE LOW (A) : 111.940 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.6 REMARK 200 DATA REDUNDANCY : 6.400 REMARK 200 R MERGE (I) : 0.08300 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 12.0000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.50 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.53 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.0 REMARK 200 DATA REDUNDANCY IN SHELL : 6.60 REMARK 200 R MERGE FOR SHELL (I) : 1.49700 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.400 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER 2.5.6, PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 56.69 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.84 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 100 MM TRIS, 15% PEG 3000, 2 MM ZINC REMARK 280 ACETATE, 10 MM SULFOBETAINE, PH 8.5, VAPOR DIFFUSION, SITTING REMARK 280 DROP, TEMPERATURE 295K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 2 2 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -X,Y,-Z+1/2 REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 55.97200 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 55.97200 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 39.18800 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 53.54250 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 39.18800 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 53.54250 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 55.97200 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 39.18800 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 53.54250 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 55.97200 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 39.18800 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 53.54250 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2490 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 16130 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -45.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH B 270 LIES ON A SPECIAL POSITION. REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OH TYR A 244 O HOH A 401 1.72 REMARK 500 NZ LYS B 43 O HOH B 201 1.92 REMARK 500 O HOH B 240 O HOH B 265 1.98 REMARK 500 ND2 ASN A 137 O2 EDO A 302 2.00 REMARK 500 OG1 THR A 23 O HOH A 402 2.06 REMARK 500 O HOH A 530 O HOH A 630 2.07 REMARK 500 O HOH A 595 O HOH A 633 2.10 REMARK 500 O HOH A 403 O HOH A 606 2.14 REMARK 500 O HOH A 489 O HOH A 613 2.16 REMARK 500 OG SER A 156 O HOH A 403 2.16 REMARK 500 O HOH A 586 O HOH A 594 2.19 REMARK 500 O HOH A 574 O HOH A 589 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 ND2 ASN A 137 O1 EDO A 302 4565 1.96 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 VAL B 40 CG1 - CB - CG2 ANGL. DEV. = 11.2 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLU A 42 -2.05 78.40 REMARK 500 LYS B 43 -153.39 -115.55 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 303 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 103 OE2 REMARK 620 2 HIS A 107 NE2 113.6 REMARK 620 3 HIS A 66 NE2 92.5 23.7 REMARK 620 N 1 2 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 302 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN A 303 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CL A 304 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CL A 305 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4LGP RELATED DB: PDB REMARK 900 RELATED ID: 4LGR RELATED DB: PDB REMARK 900 RELATED ID: 4LHJ RELATED DB: PDB REMARK 900 RELATED ID: 4LHQ RELATED DB: PDB REMARK 900 RELATED ID: 4LGS RELATED DB: PDB REMARK 900 RELATED ID: 5BOZ RELATED DB: PDB DBREF 4Z9K A 5 262 UNP P02879 RICI_RICCO 39 296 DBREF 4Z9K B 2 117 PDB 4Z9K 4Z9K 2 117 SEQRES 1 A 258 LYS GLN TYR PRO ILE ILE ASN PHE THR THR ALA GLY ALA SEQRES 2 A 258 THR VAL GLN SER TYR THR ASN PHE ILE ARG ALA VAL ARG SEQRES 3 A 258 GLY ARG LEU THR THR GLY ALA ASP VAL ARG HIS GLU ILE SEQRES 4 A 258 PRO VAL LEU PRO ASN ARG VAL GLY LEU PRO ILE ASN GLN SEQRES 5 A 258 ARG PHE ILE LEU VAL GLU LEU SER ASN HIS ALA GLU LEU SEQRES 6 A 258 SER VAL THR LEU ALA LEU ASP VAL THR ASN ALA TYR VAL SEQRES 7 A 258 VAL GLY TYR ARG ALA GLY ASN SER ALA TYR PHE PHE HIS SEQRES 8 A 258 PRO ASP ASN GLN GLU ASP ALA GLU ALA ILE THR HIS LEU SEQRES 9 A 258 PHE THR ASP VAL GLN ASN ARG TYR THR PHE ALA PHE GLY SEQRES 10 A 258 GLY ASN TYR ASP ARG LEU GLU GLN LEU ALA GLY ASN LEU SEQRES 11 A 258 ARG GLU ASN ILE GLU LEU GLY ASN GLY PRO LEU GLU GLU SEQRES 12 A 258 ALA ILE SER ALA LEU TYR TYR TYR SER THR GLY GLY THR SEQRES 13 A 258 GLN LEU PRO THR LEU ALA ARG SER PHE ILE ILE CYS ILE SEQRES 14 A 258 GLN MET ILE SER GLU ALA ALA ARG PHE GLN TYR ILE GLU SEQRES 15 A 258 GLY GLU MET ARG THR ARG ILE ARG TYR ASN ARG ARG SER SEQRES 16 A 258 ALA PRO ASP PRO SER VAL ILE THR LEU GLU ASN SER TRP SEQRES 17 A 258 GLY ARG LEU SER THR ALA ILE GLN GLU SER ASN GLN GLY SEQRES 18 A 258 ALA PHE ALA SER PRO ILE GLN LEU GLN ARG ARG ASN GLY SEQRES 19 A 258 SER LYS PHE SER VAL TYR ASP VAL SER ILE LEU ILE PRO SEQRES 20 A 258 ILE ILE ALA LEU MET VAL TYR ARG CYS ALA PRO SEQRES 1 B 116 VAL GLN LEU VAL GLU SER GLY GLY GLY LEU VAL GLN PRO SEQRES 2 B 116 GLY GLY SER LEU ARG LEU SER CYS ALA ALA SER GLY PHE SEQRES 3 B 116 THR LEU ASP ASP TYR ALA ILE GLY TRP PHE ARG GLN VAL SEQRES 4 B 116 PRO GLY LYS GLU ARG GLU GLY VAL ALA CYS VAL LYS ASP SEQRES 5 B 116 GLY SER THR TYR TYR ALA ASP SER VAL LYS GLY ARG PHE SEQRES 6 B 116 THR ILE SER ARG ASP ASN GLY ALA VAL TYR LEU GLN MET SEQRES 7 B 116 ASN SER LEU LYS PRO GLU ASP THR ALA VAL TYR TYR CYS SEQRES 8 B 116 ALA SER ARG PRO CYS PHE LEU GLY VAL PRO LEU ILE ASP SEQRES 9 B 116 PHE GLY SER TRP GLY GLN GLY THR GLN VAL THR VAL HET EDO A 301 4 HET EDO A 302 4 HET ZN A 303 1 HET CL A 304 1 HET CL A 305 1 HETNAM EDO 1,2-ETHANEDIOL HETNAM ZN ZINC ION HETNAM CL CHLORIDE ION HETSYN EDO ETHYLENE GLYCOL FORMUL 3 EDO 2(C2 H6 O2) FORMUL 5 ZN ZN 2+ FORMUL 6 CL 2(CL 1-) FORMUL 8 HOH *330(H2 O) HELIX 1 AA1 THR A 18 THR A 34 1 17 HELIX 2 AA2 PRO A 53 GLN A 56 5 4 HELIX 3 AA3 ASN A 98 THR A 106 1 9 HELIX 4 AA4 ASN A 123 GLY A 132 1 10 HELIX 5 AA5 LEU A 134 ILE A 138 5 5 HELIX 6 AA6 GLY A 141 SER A 156 1 16 HELIX 7 AA7 GLN A 161 PHE A 182 1 22 HELIX 8 AA8 PHE A 182 TYR A 195 1 14 HELIX 9 AA9 ASP A 202 GLU A 221 1 20 HELIX 10 AB1 SER A 247 ILE A 250 5 4 HELIX 11 AB2 ASP B 60 LYS B 63 5 4 HELIX 12 AB3 LYS B 83 THR B 87 5 5 SHEET 1 AA1 6 ILE A 9 THR A 13 0 SHEET 2 AA1 6 PHE A 58 SER A 64 1 O LEU A 60 N ILE A 10 SHEET 3 AA1 6 SER A 70 ASP A 76 -1 O LEU A 73 N VAL A 61 SHEET 4 AA1 6 VAL A 82 ALA A 87 -1 O VAL A 83 N ALA A 74 SHEET 5 AA1 6 SER A 90 PHE A 93 -1 O SER A 90 N ALA A 87 SHEET 6 AA1 6 ASN A 114 THR A 117 1 O TYR A 116 N PHE A 93 SHEET 1 AA2 2 VAL A 39 ARG A 40 0 SHEET 2 AA2 2 ILE A 43 PRO A 44 -1 O ILE A 43 N ARG A 40 SHEET 1 AA3 2 ALA A 226 GLN A 234 0 SHEET 2 AA3 2 LYS A 240 ASP A 245 -1 O PHE A 241 N LEU A 233 SHEET 1 AA4 4 VAL B 5 SER B 7 0 SHEET 2 AA4 4 LEU B 18 ALA B 23 -1 O ALA B 23 N VAL B 5 SHEET 3 AA4 4 ALA B 74 MET B 79 -1 O MET B 79 N LEU B 18 SHEET 4 AA4 4 PHE B 66 ASP B 71 -1 N THR B 67 O GLN B 78 SHEET 1 AA5 6 GLY B 10 LEU B 11 0 SHEET 2 AA5 6 THR B 113 THR B 116 1 O THR B 116 N GLY B 10 SHEET 3 AA5 6 ALA B 88 ALA B 93 -1 N TYR B 90 O THR B 113 SHEET 4 AA5 6 ILE B 34 GLN B 39 -1 N PHE B 37 O TYR B 91 SHEET 5 AA5 6 GLU B 46 LYS B 52 -1 O GLU B 46 N ARG B 38 SHEET 6 AA5 6 SER B 55 TYR B 58 -1 O SER B 55 N LYS B 52 SSBOND 1 CYS B 22 CYS B 92 1555 1555 2.08 SSBOND 2 CYS B 50 CYS B 97 1555 1555 2.15 LINK OE2 GLU A 103 ZN ZN A 303 1555 1555 1.96 LINK NE2 HIS A 107 ZN ZN A 303 1555 1555 2.02 LINK NE2 HIS A 66 ZN ZN A 303 1555 8555 2.02 SITE 1 AC1 6 ARG A 115 HOH A 424 HOH A 433 ALA B 93 SITE 2 AC1 6 SER B 94 ARG B 95 SITE 1 AC2 4 GLY A 132 ASN A 133 LEU A 134 ASN A 137 SITE 1 AC3 4 HIS A 66 GLU A 103 HIS A 107 CL A 304 SITE 1 AC4 5 GLY A 16 HIS A 66 GLU A 103 HIS A 107 SITE 2 AC4 5 ZN A 303 SITE 1 AC5 5 LEU A 134 ARG A 135 GLU A 136 ILE A 206 SITE 2 AC5 5 HOH A 530 CRYST1 78.376 107.085 111.944 90.00 90.00 90.00 C 2 2 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.012759 0.000000 0.000000 0.00000 SCALE2 0.000000 0.009338 0.000000 0.00000 SCALE3 0.000000 0.000000 0.008933 0.00000