data_4ZAI # _entry.id 4ZAI # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.333 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code PDB 4ZAI WWPDB D_1000208840 # _pdbx_database_PDB_obs_spr.id OBSLTE _pdbx_database_PDB_obs_spr.date 2020-10-07 _pdbx_database_PDB_obs_spr.pdb_id 7JNY _pdbx_database_PDB_obs_spr.replace_pdb_id 4ZAI _pdbx_database_PDB_obs_spr.details ? # _pdbx_database_related.db_name PDB _pdbx_database_related.details ;1O7Y was downloaded and modified to remove all waters and chains besides chain A. This monomer was then used for molecular replacement. ; _pdbx_database_related.db_id 1O7Y _pdbx_database_related.content_type unspecified # _pdbx_database_status.status_code OBS _pdbx_database_status.status_code_sf OBS _pdbx_database_status.status_code_mr ? _pdbx_database_status.entry_id 4ZAI _pdbx_database_status.recvd_initial_deposition_date 2015-04-13 _pdbx_database_status.SG_entry N _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_nmr_data ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Rosenberg Jr., E.M.' 1 'Rajasekaran, D.' 2 'Murphy, J.W.' 3 'Pantouris, G.' 4 'Lolis, E.J.' 5 # _citation.abstract ? _citation.abstract_id_CAS ? _citation.book_id_ISBN ? _citation.book_publisher ? _citation.book_publisher_city ? _citation.book_title ? _citation.coordinate_linkage ? _citation.country ? _citation.database_id_Medline ? _citation.details ? _citation.id primary _citation.journal_abbrev 'To Be Published' _citation.journal_id_ASTM ? _citation.journal_id_CSD 0353 _citation.journal_id_ISSN ? _citation.journal_full ? _citation.journal_issue ? _citation.journal_volume ? _citation.language ? _citation.page_first ? _citation.page_last ? _citation.title 'Crystal structure of CXCL13' _citation.year ? _citation.database_id_CSD ? _citation.pdbx_database_id_DOI ? _citation.pdbx_database_id_PubMed ? _citation.unpublished_flag ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Rosenberg Jr., E.M.' 1 ? primary 'Rajasekaran, D.' 2 ? primary 'Murphy, J.W.' 3 ? primary 'Pantouris, G.' 4 ? primary 'Lolis, E.J.' 5 ? # _cell.angle_alpha 90.000 _cell.angle_alpha_esd ? _cell.angle_beta 90.000 _cell.angle_beta_esd ? _cell.angle_gamma 120.000 _cell.angle_gamma_esd ? _cell.entry_id 4ZAI _cell.details ? _cell.formula_units_Z ? _cell.length_a 48.968 _cell.length_a_esd ? _cell.length_b 48.968 _cell.length_b_esd ? _cell.length_c 80.276 _cell.length_c_esd ? _cell.volume ? _cell.volume_esd ? _cell.Z_PDB 6 _cell.reciprocal_angle_alpha ? _cell.reciprocal_angle_beta ? _cell.reciprocal_angle_gamma ? _cell.reciprocal_angle_alpha_esd ? _cell.reciprocal_angle_beta_esd ? _cell.reciprocal_angle_gamma_esd ? _cell.reciprocal_length_a ? _cell.reciprocal_length_b ? _cell.reciprocal_length_c ? _cell.reciprocal_length_a_esd ? _cell.reciprocal_length_b_esd ? _cell.reciprocal_length_c_esd ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 4ZAI _symmetry.cell_setting ? _symmetry.Int_Tables_number 152 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 31 2 1' _symmetry.pdbx_full_space_group_name_H-M ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'C-X-C motif chemokine 13' 10466.571 1 ? ? 'UNP residues 23-109' ? 2 water nat water 18.015 37 ? ? ? ? # _entity_name_com.entity_id 1 _entity_name_com.name 'Angie,B cell-attracting chemokine 1,BCA-1,B lymphocyte chemoattractant,CXC chemokine BLC,Small-inducible cytokine B13' # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code ;MVLEVYYTSLRCRCVQESSVFIPRRFIDRIQILPRGNGCPRKEIIVWKKNKSIVCVDPQAEWIQRMMEVLRKRSSSTLPV PVFKRKIP ; _entity_poly.pdbx_seq_one_letter_code_can ;MVLEVYYTSLRCRCVQESSVFIPRRFIDRIQILPRGNGCPRKEIIVWKKNKSIVCVDPQAEWIQRMMEVLRKRSSSTLPV PVFKRKIP ; _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 MET n 1 2 VAL n 1 3 LEU n 1 4 GLU n 1 5 VAL n 1 6 TYR n 1 7 TYR n 1 8 THR n 1 9 SER n 1 10 LEU n 1 11 ARG n 1 12 CYS n 1 13 ARG n 1 14 CYS n 1 15 VAL n 1 16 GLN n 1 17 GLU n 1 18 SER n 1 19 SER n 1 20 VAL n 1 21 PHE n 1 22 ILE n 1 23 PRO n 1 24 ARG n 1 25 ARG n 1 26 PHE n 1 27 ILE n 1 28 ASP n 1 29 ARG n 1 30 ILE n 1 31 GLN n 1 32 ILE n 1 33 LEU n 1 34 PRO n 1 35 ARG n 1 36 GLY n 1 37 ASN n 1 38 GLY n 1 39 CYS n 1 40 PRO n 1 41 ARG n 1 42 LYS n 1 43 GLU n 1 44 ILE n 1 45 ILE n 1 46 VAL n 1 47 TRP n 1 48 LYS n 1 49 LYS n 1 50 ASN n 1 51 LYS n 1 52 SER n 1 53 ILE n 1 54 VAL n 1 55 CYS n 1 56 VAL n 1 57 ASP n 1 58 PRO n 1 59 GLN n 1 60 ALA n 1 61 GLU n 1 62 TRP n 1 63 ILE n 1 64 GLN n 1 65 ARG n 1 66 MET n 1 67 MET n 1 68 GLU n 1 69 VAL n 1 70 LEU n 1 71 ARG n 1 72 LYS n 1 73 ARG n 1 74 SER n 1 75 SER n 1 76 SER n 1 77 THR n 1 78 LEU n 1 79 PRO n 1 80 VAL n 1 81 PRO n 1 82 VAL n 1 83 PHE n 1 84 LYS n 1 85 ARG n 1 86 LYS n 1 87 ILE n 1 88 PRO n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type 'Biological sequence' _entity_src_gen.pdbx_beg_seq_num 1 _entity_src_gen.pdbx_end_seq_num 88 _entity_src_gen.gene_src_common_name Human _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene 'CXCL13, BCA1, BLC, SCYB13' _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Homo sapiens' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 9606 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 562 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain ? _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type Plasmid _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name pET-22b _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code CXL13_HUMAN _struct_ref.pdbx_db_accession O43927 _struct_ref.pdbx_db_isoform ? _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ;VLEVYYTSLRCRCVQESSVFIPRRFIDRIQILPRGNGCPRKEIIVWKKNKSIVCVDPQAEWIQRMMEVLRKRSSSTLPVP VFKRKIP ; _struct_ref.pdbx_align_begin 23 # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 4ZAI _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 2 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 88 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession O43927 _struct_ref_seq.db_align_beg 23 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 109 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 1 _struct_ref_seq.pdbx_auth_seq_align_end 87 # _struct_ref_seq_dif.align_id 1 _struct_ref_seq_dif.pdbx_pdb_id_code 4ZAI _struct_ref_seq_dif.mon_id MET _struct_ref_seq_dif.pdbx_pdb_strand_id A _struct_ref_seq_dif.seq_num 1 _struct_ref_seq_dif.pdbx_pdb_ins_code ? _struct_ref_seq_dif.pdbx_seq_db_name UNP _struct_ref_seq_dif.pdbx_seq_db_accession_code O43927 _struct_ref_seq_dif.db_mon_id ? _struct_ref_seq_dif.pdbx_seq_db_seq_num ? _struct_ref_seq_dif.details 'expression tag' _struct_ref_seq_dif.pdbx_auth_seq_num 0 _struct_ref_seq_dif.pdbx_ordinal 1 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.absorpt_coefficient_mu ? _exptl.absorpt_correction_T_max ? _exptl.absorpt_correction_T_min ? _exptl.absorpt_correction_type ? _exptl.absorpt_process_details ? _exptl.entry_id 4ZAI _exptl.crystals_number 1 _exptl.details ? _exptl.method 'X-RAY DIFFRACTION' _exptl.method_details ? # _exptl_crystal.colour ? _exptl_crystal.density_diffrn ? _exptl_crystal.density_Matthews 2.65 _exptl_crystal.density_method ? _exptl_crystal.density_percent_sol 57.95 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.id 1 _exptl_crystal.preparation ? _exptl_crystal.size_max ? _exptl_crystal.size_mid ? _exptl_crystal.size_min ? _exptl_crystal.size_rad ? _exptl_crystal.colour_lustre ? _exptl_crystal.colour_modifier ? _exptl_crystal.colour_primary ? _exptl_crystal.density_meas ? _exptl_crystal.density_meas_esd ? _exptl_crystal.density_meas_gt ? _exptl_crystal.density_meas_lt ? _exptl_crystal.density_meas_temp ? _exptl_crystal.density_meas_temp_esd ? _exptl_crystal.density_meas_temp_gt ? _exptl_crystal.density_meas_temp_lt ? _exptl_crystal.pdbx_crystal_image_url ? _exptl_crystal.pdbx_crystal_image_format ? _exptl_crystal.pdbx_mosaicity ? _exptl_crystal.pdbx_mosaicity_esd ? # _exptl_crystal_grow.apparatus ? _exptl_crystal_grow.atmosphere ? _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.details ? _exptl_crystal_grow.method 'VAPOR DIFFUSION, HANGING DROP' _exptl_crystal_grow.method_ref ? _exptl_crystal_grow.pH 9.0 _exptl_crystal_grow.pressure ? _exptl_crystal_grow.pressure_esd ? _exptl_crystal_grow.seeding ? _exptl_crystal_grow.seeding_ref ? _exptl_crystal_grow.temp 295 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.temp_esd ? _exptl_crystal_grow.time ? _exptl_crystal_grow.pdbx_details ;0.1 M Sodium chloride 0.1 M BIS-TRIS propane pH 9.0, 25% w/v Polyethylene glycol 1,500 Crystals formed within a couple days ; _exptl_crystal_grow.pdbx_pH_range ? # _diffrn.ambient_environment ? _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.ambient_temp_esd ? _diffrn.crystal_id 1 _diffrn.crystal_support ? _diffrn.crystal_treatment ? _diffrn.details ? _diffrn.id 1 _diffrn.ambient_pressure ? _diffrn.ambient_pressure_esd ? _diffrn.ambient_pressure_gt ? _diffrn.ambient_pressure_lt ? _diffrn.ambient_temp_gt ? _diffrn.ambient_temp_lt ? # _diffrn_detector.details ? _diffrn_detector.detector PIXEL _diffrn_detector.diffrn_id 1 _diffrn_detector.type 'DECTRIS PILATUS 200K' _diffrn_detector.area_resol_mean ? _diffrn_detector.dtime ? _diffrn_detector.pdbx_frames_total ? _diffrn_detector.pdbx_collection_time_total ? _diffrn_detector.pdbx_collection_date 2015-02-14 # _diffrn_radiation.collimation ? _diffrn_radiation.diffrn_id 1 _diffrn_radiation.filter_edge ? _diffrn_radiation.inhomogeneity ? _diffrn_radiation.monochromator ? _diffrn_radiation.polarisn_norm ? _diffrn_radiation.polarisn_ratio ? _diffrn_radiation.probe ? _diffrn_radiation.type ? _diffrn_radiation.xray_symbol ? _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.pdbx_wavelength_list ? _diffrn_radiation.pdbx_wavelength ? _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_analyzer ? _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 1.54 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.current ? _diffrn_source.details ? _diffrn_source.diffrn_id 1 _diffrn_source.power ? _diffrn_source.size ? _diffrn_source.source 'ROTATING ANODE' _diffrn_source.target ? _diffrn_source.type RIGAKU _diffrn_source.voltage ? _diffrn_source.take-off_angle ? _diffrn_source.pdbx_wavelength_list 1.54 _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_synchrotron_beamline ? _diffrn_source.pdbx_synchrotron_site ? # _reflns.B_iso_Wilson_estimate ? _reflns.entry_id 4ZAI _reflns.data_reduction_details ? _reflns.data_reduction_method ? _reflns.d_resolution_high 1.950 _reflns.d_resolution_low 50.000 _reflns.details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.number_all ? _reflns.number_obs 8527 _reflns.observed_criterion ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.observed_criterion_I_max ? _reflns.observed_criterion_I_min ? _reflns.observed_criterion_sigma_F ? _reflns.observed_criterion_sigma_I ? _reflns.percent_possible_obs 99.700 _reflns.R_free_details ? _reflns.Rmerge_F_all ? _reflns.Rmerge_F_obs ? _reflns.Friedel_coverage ? _reflns.number_gt ? _reflns.threshold_expression ? _reflns.pdbx_redundancy 4.900 _reflns.pdbx_Rmerge_I_obs 0.055 _reflns.pdbx_Rmerge_I_all ? _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_av_sigmaI 23.250 _reflns.pdbx_netI_over_sigmaI 15.000 _reflns.pdbx_res_netI_over_av_sigmaI_2 ? _reflns.pdbx_res_netI_over_sigmaI_2 ? _reflns.pdbx_chi_squared 1.021 _reflns.pdbx_scaling_rejects ? _reflns.pdbx_d_res_high_opt ? _reflns.pdbx_d_res_low_opt ? _reflns.pdbx_d_res_opt_method ? _reflns.phase_calculation_details ? _reflns.pdbx_Rrim_I_all 0.061 _reflns.pdbx_Rpim_I_all 0.025 _reflns.pdbx_d_opt ? _reflns.pdbx_number_measured_all 41504 _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 _reflns.pdbx_CC_half ? _reflns.pdbx_R_split ? # loop_ _reflns_shell.d_res_high _reflns_shell.d_res_low _reflns_shell.meanI_over_sigI_all _reflns_shell.meanI_over_sigI_obs _reflns_shell.number_measured_all _reflns_shell.number_measured_obs _reflns_shell.number_possible _reflns_shell.number_unique_all _reflns_shell.number_unique_obs _reflns_shell.percent_possible_all _reflns_shell.percent_possible_obs _reflns_shell.Rmerge_F_all _reflns_shell.Rmerge_F_obs _reflns_shell.Rmerge_I_all _reflns_shell.Rmerge_I_obs _reflns_shell.meanI_over_sigI_gt _reflns_shell.meanI_over_uI_all _reflns_shell.meanI_over_uI_gt _reflns_shell.number_measured_gt _reflns_shell.number_unique_gt _reflns_shell.percent_possible_gt _reflns_shell.Rmerge_F_gt _reflns_shell.Rmerge_I_gt _reflns_shell.pdbx_redundancy _reflns_shell.pdbx_Rsym_value _reflns_shell.pdbx_chi_squared _reflns_shell.pdbx_netI_over_sigmaI_all _reflns_shell.pdbx_netI_over_sigmaI_obs _reflns_shell.pdbx_Rrim_I_all _reflns_shell.pdbx_Rpim_I_all _reflns_shell.pdbx_rejects _reflns_shell.pdbx_ordinal _reflns_shell.pdbx_diffrn_id _reflns_shell.pdbx_CC_half _reflns_shell.pdbx_R_split 1.950 1.980 ? ? ? ? ? 396 ? 99.200 ? ? ? ? 0.456 ? ? ? ? ? ? ? ? 3.200 ? 1.076 ? ? 0.545 0.292 0 1 1 0.854 ? 1.980 2.020 ? ? ? ? ? 417 ? 98.600 ? ? ? ? 0.385 ? ? ? ? ? ? ? ? 3.300 ? 1.012 ? ? 0.457 0.242 0 2 1 0.876 ? 2.020 2.060 ? ? ? ? ? 413 ? 99.500 ? ? ? ? 0.323 ? ? ? ? ? ? ? ? 3.600 ? 1.013 ? ? 0.380 0.196 0 3 1 0.929 ? 2.060 2.100 ? ? ? ? ? 401 ? 99.500 ? ? ? ? 0.288 ? ? ? ? ? ? ? ? 3.600 ? 1.002 ? ? 0.338 0.174 0 4 1 0.927 ? 2.100 2.150 ? ? ? ? ? 430 ? 99.500 ? ? ? ? 0.265 ? ? ? ? ? ? ? ? 3.700 ? 0.930 ? ? 0.310 0.157 0 5 1 0.953 ? 2.150 2.200 ? ? ? ? ? 403 ? 99.800 ? ? ? ? 0.226 ? ? ? ? ? ? ? ? 3.900 ? 0.935 ? ? 0.263 0.132 0 6 1 0.961 ? 2.200 2.250 ? ? ? ? ? 427 ? 99.800 ? ? ? ? 0.183 ? ? ? ? ? ? ? ? 3.900 ? 0.990 ? ? 0.212 0.107 0 7 1 0.974 ? 2.250 2.310 ? ? ? ? ? 423 ? 100.000 ? ? ? ? 0.170 ? ? ? ? ? ? ? ? 4.100 ? 1.081 ? ? 0.196 0.095 0 8 1 0.979 ? 2.310 2.380 ? ? ? ? ? 420 ? 100.000 ? ? ? ? 0.173 ? ? ? ? ? ? ? ? 4.200 ? 0.949 ? ? 0.198 0.095 0 9 1 0.982 ? 2.380 2.460 ? ? ? ? ? 428 ? 100.000 ? ? ? ? 0.139 ? ? ? ? ? ? ? ? 4.300 ? 0.991 ? ? 0.159 0.075 0 10 1 0.990 ? 2.460 2.540 ? ? ? ? ? 424 ? 99.800 ? ? ? ? 0.117 ? ? ? ? ? ? ? ? 4.500 ? 0.996 ? ? 0.132 0.061 0 11 1 0.993 ? 2.540 2.650 ? ? ? ? ? 414 ? 99.800 ? ? ? ? 0.115 ? ? ? ? ? ? ? ? 4.700 ? 0.994 ? ? 0.130 0.059 0 12 1 0.990 ? 2.650 2.770 ? ? ? ? ? 433 ? 99.800 ? ? ? ? 0.089 ? ? ? ? ? ? ? ? 4.900 ? 1.031 ? ? 0.100 0.044 0 13 1 0.995 ? 2.770 2.910 ? ? ? ? ? 412 ? 100.000 ? ? ? ? 0.079 ? ? ? ? ? ? ? ? 5.100 ? 1.124 ? ? 0.087 0.038 0 14 1 0.996 ? 2.910 3.100 ? ? ? ? ? 435 ? 100.000 ? ? ? ? 0.063 ? ? ? ? ? ? ? ? 5.600 ? 1.022 ? ? 0.070 0.029 0 15 1 0.997 ? 3.100 3.330 ? ? ? ? ? 431 ? 100.000 ? ? ? ? 0.050 ? ? ? ? ? ? ? ? 5.800 ? 0.999 ? ? 0.055 0.023 0 16 1 0.998 ? 3.330 3.670 ? ? ? ? ? 439 ? 100.000 ? ? ? ? 0.043 ? ? ? ? ? ? ? ? 6.200 ? 1.063 ? ? 0.047 0.019 0 17 1 0.999 ? 3.670 4.200 ? ? ? ? ? 437 ? 100.000 ? ? ? ? 0.040 ? ? ? ? ? ? ? ? 6.700 ? 1.148 ? ? 0.043 0.017 0 18 1 0.998 ? 4.200 5.290 ? ? ? ? ? 451 ? 99.800 ? ? ? ? 0.038 ? ? ? ? ? ? ? ? 6.500 ? 1.009 ? ? 0.042 0.016 0 19 1 0.999 ? 5.290 50.000 ? ? ? ? ? 493 ? 99.600 ? ? ? ? 0.043 ? ? ? ? ? ? ? ? 8.500 ? 0.977 ? ? 0.045 0.016 0 20 1 0.998 ? # _refine.aniso_B[1][1] 0.9200 _refine.aniso_B[1][2] 0.4600 _refine.aniso_B[1][3] 0.0000 _refine.aniso_B[2][2] 0.9200 _refine.aniso_B[2][3] -0.0000 _refine.aniso_B[3][3] -2.9800 _refine.B_iso_max 76.930 _refine.B_iso_mean 35.4460 _refine.B_iso_min 18.970 _refine.correlation_coeff_Fo_to_Fc 0.9420 _refine.correlation_coeff_Fo_to_Fc_free 0.9300 _refine.details 'HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS U VALUES : REFINED INDIVIDUALLY' _refine.diff_density_max ? _refine.diff_density_max_esd ? _refine.diff_density_min ? _refine.diff_density_min_esd ? _refine.diff_density_rms ? _refine.diff_density_rms_esd ? _refine.entry_id 4ZAI _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.ls_abs_structure_details ? _refine.ls_abs_structure_Flack ? _refine.ls_abs_structure_Flack_esd ? _refine.ls_abs_structure_Rogers ? _refine.ls_abs_structure_Rogers_esd ? _refine.ls_d_res_high 1.9500 _refine.ls_d_res_low 42.4100 _refine.ls_extinction_coef ? _refine.ls_extinction_coef_esd ? _refine.ls_extinction_expression ? _refine.ls_extinction_method ? _refine.ls_goodness_of_fit_all ? _refine.ls_goodness_of_fit_all_esd ? _refine.ls_goodness_of_fit_obs ? _refine.ls_goodness_of_fit_obs_esd ? _refine.ls_hydrogen_treatment ? _refine.ls_matrix_type ? _refine.ls_number_constraints ? _refine.ls_number_parameters ? _refine.ls_number_reflns_all ? _refine.ls_number_reflns_obs 8037 _refine.ls_number_reflns_R_free 465 _refine.ls_number_reflns_R_work ? _refine.ls_number_restraints ? _refine.ls_percent_reflns_obs 99.5200 _refine.ls_percent_reflns_R_free 5.5000 _refine.ls_R_factor_all ? _refine.ls_R_factor_obs 0.2328 _refine.ls_R_factor_R_free 0.2532 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_R_factor_R_work 0.2316 _refine.ls_R_Fsqd_factor_obs ? _refine.ls_R_I_factor_obs ? _refine.ls_redundancy_reflns_all ? _refine.ls_redundancy_reflns_obs ? _refine.ls_restrained_S_all ? _refine.ls_restrained_S_obs ? _refine.ls_shift_over_esd_max ? _refine.ls_shift_over_esd_mean ? _refine.ls_structure_factor_coef ? _refine.ls_weighting_details ? _refine.ls_weighting_scheme ? _refine.ls_wR_factor_all ? _refine.ls_wR_factor_obs ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.occupancy_max ? _refine.occupancy_min ? _refine.solvent_model_details MASK _refine.solvent_model_param_bsol ? _refine.solvent_model_param_ksol ? _refine.ls_R_factor_gt ? _refine.ls_goodness_of_fit_gt ? _refine.ls_goodness_of_fit_ref ? _refine.ls_shift_over_su_max ? _refine.ls_shift_over_su_max_lt ? _refine.ls_shift_over_su_mean ? _refine.ls_shift_over_su_mean_lt ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F 0.000 _refine.pdbx_ls_sigma_Fsqd ? _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_starting_model 1O7Y _refine.pdbx_stereochemistry_target_values 'MAXIMUM LIKELIHOOD' _refine.pdbx_R_Free_selection_details RANDOM _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_overall_ESU_R 0.1680 _refine.pdbx_overall_ESU_R_Free 0.1480 _refine.pdbx_solvent_vdw_probe_radii 1.2000 _refine.pdbx_solvent_ion_probe_radii 0.8000 _refine.pdbx_solvent_shrinkage_radii 0.8000 _refine.pdbx_real_space_R ? _refine.pdbx_density_correlation ? _refine.pdbx_pd_number_of_powder_patterns ? _refine.pdbx_pd_number_of_points ? _refine.pdbx_pd_meas_number_of_points ? _refine.pdbx_pd_proc_ls_prof_R_factor ? _refine.pdbx_pd_proc_ls_prof_wR_factor ? _refine.pdbx_pd_Marquardt_correlation_coeff ? _refine.pdbx_pd_Fsqrd_R_factor ? _refine.pdbx_pd_ls_matrix_band_width ? _refine.pdbx_overall_phase_error ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_diffrn_id 1 _refine.overall_SU_B ? _refine.overall_SU_ML ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_average_fsc_overall ? _refine.pdbx_average_fsc_work ? _refine.pdbx_average_fsc_free ? # _refine_hist.cycle_id final _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.d_res_high 1.9500 _refine_hist.d_res_low 42.4100 _refine_hist.pdbx_number_atoms_ligand 0 _refine_hist.number_atoms_solvent 38 _refine_hist.number_atoms_total 698 _refine_hist.pdbx_number_residues_total 80 _refine_hist.pdbx_B_iso_mean_solvent 32.15 _refine_hist.pdbx_number_atoms_protein 660 _refine_hist.pdbx_number_atoms_nucleic_acid 0 # loop_ _refine_ls_restr.pdbx_refine_id _refine_ls_restr.criterion _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.number _refine_ls_restr.rejects _refine_ls_restr.type _refine_ls_restr.weight _refine_ls_restr.pdbx_restraint_function 'X-RAY DIFFRACTION' ? 0.021 0.019 674 ? r_bond_refined_d ? ? 'X-RAY DIFFRACTION' ? 0.000 0.020 683 ? r_bond_other_d ? ? 'X-RAY DIFFRACTION' ? 2.053 1.972 908 ? r_angle_refined_deg ? ? 'X-RAY DIFFRACTION' ? 3.497 3.000 1566 ? r_angle_other_deg ? ? 'X-RAY DIFFRACTION' ? 5.869 5.000 79 ? r_dihedral_angle_1_deg ? ? 'X-RAY DIFFRACTION' ? 24.925 21.034 29 ? r_dihedral_angle_2_deg ? ? 'X-RAY DIFFRACTION' ? 14.077 15.000 135 ? r_dihedral_angle_3_deg ? ? 'X-RAY DIFFRACTION' ? 20.116 15.000 10 ? r_dihedral_angle_4_deg ? ? 'X-RAY DIFFRACTION' ? 0.114 0.200 101 ? r_chiral_restr ? ? 'X-RAY DIFFRACTION' ? 0.011 0.021 722 ? r_gen_planes_refined ? ? 'X-RAY DIFFRACTION' ? 0.015 0.020 156 ? r_gen_planes_other ? ? 'X-RAY DIFFRACTION' ? 3.468 3.143 319 ? r_mcbond_it ? ? 'X-RAY DIFFRACTION' ? 3.458 3.132 318 ? r_mcbond_other ? ? 'X-RAY DIFFRACTION' ? 4.735 4.672 397 ? r_mcangle_it ? ? # _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_ls_shell.d_res_high 1.9500 _refine_ls_shell.d_res_low 2.0000 _refine_ls_shell.number_reflns_all 589 _refine_ls_shell.number_reflns_obs ? _refine_ls_shell.number_reflns_R_free 30 _refine_ls_shell.number_reflns_R_work 559 _refine_ls_shell.percent_reflns_obs 95.9300 _refine_ls_shell.percent_reflns_R_free ? _refine_ls_shell.R_factor_all ? _refine_ls_shell.R_factor_obs ? _refine_ls_shell.R_factor_R_free 0.3320 _refine_ls_shell.R_factor_R_free_error ? _refine_ls_shell.R_factor_R_work 0.2800 _refine_ls_shell.redundancy_reflns_all ? _refine_ls_shell.redundancy_reflns_obs ? _refine_ls_shell.wR_factor_all ? _refine_ls_shell.wR_factor_obs ? _refine_ls_shell.wR_factor_R_free ? _refine_ls_shell.wR_factor_R_work ? _refine_ls_shell.pdbx_total_number_of_bins_used 20 _refine_ls_shell.pdbx_phase_error ? _refine_ls_shell.pdbx_fsc_work ? _refine_ls_shell.pdbx_fsc_free ? # _struct.entry_id 4ZAI _struct.title 'Crystal structure of CXCL13' _struct.pdbx_descriptor CXCL13 _struct.pdbx_model_details ? _struct.pdbx_formula_weight ? _struct.pdbx_formula_weight_method ? _struct.pdbx_model_type_details ? _struct.pdbx_CASP_flag ? # _struct_keywords.entry_id 4ZAI _struct_keywords.text 'Chemokine, CXCL13, CYTOKINE' _struct_keywords.pdbx_keywords CYTOKINE # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? # _struct_biol.details ;Author stated the following: There is substantial evidence that chemokines dimerize in solution. However, it has not yet been demonstrated that CXCL13 homodimerizes. We do believe that to be the case (especially due to the symmetry mates in the crystal structure), but we have not yet performed the experiments to prove it. These experiments will be conducted and included in a subsequent manuscript. As such, it is likely that CXCL13 forms a dimer; however, the structure we have provided is that of a monomer. ; _struct_biol.id 1 _struct_biol.pdbx_aggregation_state ? _struct_biol.pdbx_assembly_method ? _struct_biol.pdbx_formula_weight ? _struct_biol.pdbx_formula_weight_method ? _struct_biol.pdbx_parent_biol_id ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 AA1 PRO A 23 ? ARG A 25 ? PRO A 22 ARG A 24 5 ? 3 HELX_P HELX_P2 AA2 ALA A 60 ? ARG A 73 ? ALA A 59 ARG A 72 1 ? 14 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role disulf1 disulf ? ? A CYS 12 SG ? ? ? 1_555 A CYS 39 SG ? ? A CYS 11 A CYS 38 1_555 ? ? ? ? ? ? ? 2.065 ? ? disulf2 disulf ? ? A CYS 14 SG ? ? ? 1_555 A CYS 55 SG ? ? A CYS 13 A CYS 54 1_555 ? ? ? ? ? ? ? 2.084 ? ? # _struct_conn_type.id disulf _struct_conn_type.criteria ? _struct_conn_type.reference ? # _struct_sheet.id AA1 _struct_sheet.type ? _struct_sheet.number_strands 4 _struct_sheet.details ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense AA1 1 2 ? parallel AA1 2 3 ? anti-parallel AA1 3 4 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id AA1 1 VAL A 2 ? VAL A 5 ? VAL A 1 VAL A 4 AA1 2 ILE A 27 ? LEU A 33 ? ILE A 26 LEU A 32 AA1 3 GLU A 43 ? LYS A 48 ? GLU A 42 LYS A 47 AA1 4 ILE A 53 ? VAL A 56 ? ILE A 52 VAL A 55 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id AA1 1 2 N GLU A 4 ? N GLU A 3 O ILE A 32 ? O ILE A 31 AA1 2 3 N ARG A 29 ? N ARG A 28 O TRP A 47 ? O TRP A 46 AA1 3 4 N ILE A 44 ? N ILE A 43 O VAL A 56 ? O VAL A 55 # _atom_sites.entry_id 4ZAI _atom_sites.fract_transf_matrix[1][1] 0.020422 _atom_sites.fract_transf_matrix[1][2] 0.011790 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] -0.000000 _atom_sites.fract_transf_matrix[2][2] 0.023581 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] -0.000000 _atom_sites.fract_transf_matrix[3][3] 0.012457 _atom_sites.fract_transf_vector[1] 0.000000 _atom_sites.fract_transf_vector[2] 0.000000 _atom_sites.fract_transf_vector[3] 0.000000 # loop_ _atom_type.symbol C N O S # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 MET 1 0 0 MET MET A . n A 1 2 VAL 2 1 1 VAL VAL A . n A 1 3 LEU 3 2 2 LEU LEU A . n A 1 4 GLU 4 3 3 GLU GLU A . n A 1 5 VAL 5 4 4 VAL VAL A . n A 1 6 TYR 6 5 5 TYR TYR A . n A 1 7 TYR 7 6 6 TYR TYR A . n A 1 8 THR 8 7 7 THR THR A . n A 1 9 SER 9 8 8 SER SER A . n A 1 10 LEU 10 9 9 LEU LEU A . n A 1 11 ARG 11 10 10 ARG ARG A . n A 1 12 CYS 12 11 11 CYS CYS A . n A 1 13 ARG 13 12 12 ARG ARG A . n A 1 14 CYS 14 13 13 CYS CYS A . n A 1 15 VAL 15 14 14 VAL VAL A . n A 1 16 GLN 16 15 15 GLN GLN A . n A 1 17 GLU 17 16 16 GLU GLU A . n A 1 18 SER 18 17 17 SER SER A . n A 1 19 SER 19 18 18 SER SER A . n A 1 20 VAL 20 19 19 VAL VAL A . n A 1 21 PHE 21 20 20 PHE PHE A . n A 1 22 ILE 22 21 21 ILE ILE A . n A 1 23 PRO 23 22 22 PRO PRO A . n A 1 24 ARG 24 23 23 ARG ARG A . n A 1 25 ARG 25 24 24 ARG ARG A . n A 1 26 PHE 26 25 25 PHE PHE A . n A 1 27 ILE 27 26 26 ILE ILE A . n A 1 28 ASP 28 27 27 ASP ASP A . n A 1 29 ARG 29 28 28 ARG ARG A . n A 1 30 ILE 30 29 29 ILE ILE A . n A 1 31 GLN 31 30 30 GLN GLN A . n A 1 32 ILE 32 31 31 ILE ILE A . n A 1 33 LEU 33 32 32 LEU LEU A . n A 1 34 PRO 34 33 33 PRO PRO A . n A 1 35 ARG 35 34 34 ARG ARG A . n A 1 36 GLY 36 35 35 GLY GLY A . n A 1 37 ASN 37 36 36 ASN ASN A . n A 1 38 GLY 38 37 37 GLY GLY A . n A 1 39 CYS 39 38 38 CYS CYS A . n A 1 40 PRO 40 39 39 PRO PRO A . n A 1 41 ARG 41 40 40 ARG ARG A . n A 1 42 LYS 42 41 41 LYS LYS A . n A 1 43 GLU 43 42 42 GLU GLU A . n A 1 44 ILE 44 43 43 ILE ILE A . n A 1 45 ILE 45 44 44 ILE ILE A . n A 1 46 VAL 46 45 45 VAL VAL A . n A 1 47 TRP 47 46 46 TRP TRP A . n A 1 48 LYS 48 47 47 LYS LYS A . n A 1 49 LYS 49 48 48 LYS LYS A . n A 1 50 ASN 50 49 49 ASN ASN A . n A 1 51 LYS 51 50 50 LYS LYS A . n A 1 52 SER 52 51 51 SER SER A . n A 1 53 ILE 53 52 52 ILE ILE A . n A 1 54 VAL 54 53 53 VAL VAL A . n A 1 55 CYS 55 54 54 CYS CYS A . n A 1 56 VAL 56 55 55 VAL VAL A . n A 1 57 ASP 57 56 56 ASP ASP A . n A 1 58 PRO 58 57 57 PRO PRO A . n A 1 59 GLN 59 58 58 GLN GLN A . n A 1 60 ALA 60 59 59 ALA ALA A . n A 1 61 GLU 61 60 60 GLU GLU A . n A 1 62 TRP 62 61 61 TRP TRP A . n A 1 63 ILE 63 62 62 ILE ILE A . n A 1 64 GLN 64 63 63 GLN GLN A . n A 1 65 ARG 65 64 64 ARG ARG A . n A 1 66 MET 66 65 65 MET MET A . n A 1 67 MET 67 66 66 MET MET A . n A 1 68 GLU 68 67 67 GLU GLU A . n A 1 69 VAL 69 68 68 VAL VAL A . n A 1 70 LEU 70 69 69 LEU LEU A . n A 1 71 ARG 71 70 70 ARG ARG A . n A 1 72 LYS 72 71 71 LYS LYS A . n A 1 73 ARG 73 72 72 ARG ARG A . n A 1 74 SER 74 73 73 SER SER A . n A 1 75 SER 75 74 74 SER SER A . n A 1 76 SER 76 75 75 SER SER A . n A 1 77 THR 77 76 76 THR THR A . n A 1 78 LEU 78 77 77 LEU LEU A . n A 1 79 PRO 79 78 78 PRO PRO A . n A 1 80 VAL 80 79 79 VAL VAL A . n A 1 81 PRO 81 80 ? ? ? A . n A 1 82 VAL 82 81 ? ? ? A . n A 1 83 PHE 83 82 ? ? ? A . n A 1 84 LYS 84 83 ? ? ? A . n A 1 85 ARG 85 84 ? ? ? A . n A 1 86 LYS 86 85 ? ? ? A . n A 1 87 ILE 87 86 ? ? ? A . n A 1 88 PRO 88 87 ? ? ? A . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 HOH 1 101 14 HOH HOH A . B 2 HOH 2 102 34 HOH HOH A . B 2 HOH 3 103 37 HOH HOH A . B 2 HOH 4 104 30 HOH HOH A . B 2 HOH 5 105 11 HOH HOH A . B 2 HOH 6 106 22 HOH HOH A . B 2 HOH 7 107 23 HOH HOH A . B 2 HOH 8 108 21 HOH HOH A . B 2 HOH 9 109 17 HOH HOH A . B 2 HOH 10 110 29 HOH HOH A . B 2 HOH 11 111 20 HOH HOH A . B 2 HOH 12 112 18 HOH HOH A . B 2 HOH 13 113 35 HOH HOH A . B 2 HOH 14 114 1 HOH HOH A . B 2 HOH 15 115 8 HOH HOH A . B 2 HOH 16 116 3 HOH HOH A . B 2 HOH 17 117 5 HOH HOH A . B 2 HOH 18 118 19 HOH HOH A . B 2 HOH 19 119 32 HOH HOH A . B 2 HOH 20 120 6 HOH HOH A . B 2 HOH 21 121 2 HOH HOH A . B 2 HOH 22 122 13 HOH HOH A . B 2 HOH 23 123 4 HOH HOH A . B 2 HOH 24 124 9 HOH HOH A . B 2 HOH 25 125 33 HOH HOH A . B 2 HOH 26 126 10 HOH HOH A . B 2 HOH 27 127 15 HOH HOH A . B 2 HOH 28 128 26 HOH HOH A . B 2 HOH 29 129 7 HOH HOH A . B 2 HOH 30 130 31 HOH HOH A . B 2 HOH 31 131 28 HOH HOH A . B 2 HOH 32 132 12 HOH HOH A . B 2 HOH 33 133 25 HOH HOH A . B 2 HOH 34 134 16 HOH HOH A . B 2 HOH 35 135 36 HOH HOH A . B 2 HOH 36 136 24 HOH HOH A . B 2 HOH 37 137 27 HOH HOH A . # loop_ _pdbx_struct_assembly.id _pdbx_struct_assembly.details _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count 1 author_defined_assembly ? monomeric 1 2 software_defined_assembly PISA dimeric 2 # loop_ _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression _pdbx_struct_assembly_gen.asym_id_list 1 1 A,B 2 1,2 A,B # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 2 'ABSA (A^2)' 1940 ? 2 MORE -9 ? 2 'SSA (A^2)' 9990 ? # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 2 'crystal symmetry operation' 5_554 x-y,-y,-z-1/3 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 -1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 -1.0000000000 -26.7586666667 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2015-07-15 2 'Structure model' 1 1 2017-08-09 3 'Structure model' 1 2 2017-09-20 4 'Structure model' 1 3 2019-12-11 5 'Structure model' 1 4 2020-10-07 # loop_ _pdbx_audit_revision_details.ordinal _pdbx_audit_revision_details.revision_ordinal _pdbx_audit_revision_details.data_content_type _pdbx_audit_revision_details.provider _pdbx_audit_revision_details.type _pdbx_audit_revision_details.description _pdbx_audit_revision_details.details 1 1 'Structure model' repository 'Initial release' ? ? 2 5 'Structure model' repository Obsolete ? ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Derived calculations' 2 2 'Structure model' 'Source and taxonomy' 3 2 'Structure model' 'Structure summary' 4 3 'Structure model' 'Author supporting evidence' 5 4 'Structure model' 'Author supporting evidence' 6 5 'Structure model' Advisory 7 5 'Structure model' Other # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 2 'Structure model' entity_src_gen 2 2 'Structure model' pdbx_struct_assembly 3 2 'Structure model' pdbx_struct_assembly_prop 4 2 'Structure model' pdbx_struct_oper_list 5 2 'Structure model' struct_keywords 6 3 'Structure model' pdbx_audit_support 7 4 'Structure model' pdbx_audit_support 8 5 'Structure model' pdbx_database_PDB_obs_spr 9 5 'Structure model' pdbx_database_status # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 2 'Structure model' '_entity_src_gen.pdbx_alt_source_flag' 2 2 'Structure model' '_pdbx_struct_assembly.oligomeric_details' 3 2 'Structure model' '_pdbx_struct_assembly_prop.type' 4 2 'Structure model' '_pdbx_struct_assembly_prop.value' 5 2 'Structure model' '_pdbx_struct_oper_list.symmetry_operation' 6 2 'Structure model' '_struct_keywords.text' 7 3 'Structure model' '_pdbx_audit_support.funding_organization' 8 4 'Structure model' '_pdbx_audit_support.funding_organization' 9 5 'Structure model' '_pdbx_database_status.status_code' 10 5 'Structure model' '_pdbx_database_status.status_code_sf' # _phasing.method MR # loop_ _software.citation_id _software.classification _software.compiler_name _software.compiler_version _software.contact_author _software.contact_author_email _software.date _software.description _software.dependencies _software.hardware _software.language _software.location _software.mods _software.name _software.os _software.os_version _software.type _software.version _software.pdbx_ordinal ? 'data reduction' ? ? ? ? ? ? ? ? ? ? ? DENZO ? ? ? . 1 ? 'data scaling' ? ? ? ? ? ? ? ? ? ? ? SCALEPACK ? ? ? . 2 ? phasing ? ? ? ? ? ? ? ? ? ? ? PHASER ? ? ? . 3 ? refinement ? ? ? ? ? ? ? ? ? ? ? REFMAC ? ? ? 5.8.0107 4 ? 'data extraction' ? ? ? ? ? ? ? ? ? ? ? PDB_EXTRACT ? ? ? 3.15 5 # _pdbx_validate_rmsd_angle.id 1 _pdbx_validate_rmsd_angle.PDB_model_num 1 _pdbx_validate_rmsd_angle.auth_atom_id_1 NE _pdbx_validate_rmsd_angle.auth_asym_id_1 A _pdbx_validate_rmsd_angle.auth_comp_id_1 ARG _pdbx_validate_rmsd_angle.auth_seq_id_1 64 _pdbx_validate_rmsd_angle.PDB_ins_code_1 ? _pdbx_validate_rmsd_angle.label_alt_id_1 ? _pdbx_validate_rmsd_angle.auth_atom_id_2 CZ _pdbx_validate_rmsd_angle.auth_asym_id_2 A _pdbx_validate_rmsd_angle.auth_comp_id_2 ARG _pdbx_validate_rmsd_angle.auth_seq_id_2 64 _pdbx_validate_rmsd_angle.PDB_ins_code_2 ? _pdbx_validate_rmsd_angle.label_alt_id_2 ? _pdbx_validate_rmsd_angle.auth_atom_id_3 NH1 _pdbx_validate_rmsd_angle.auth_asym_id_3 A _pdbx_validate_rmsd_angle.auth_comp_id_3 ARG _pdbx_validate_rmsd_angle.auth_seq_id_3 64 _pdbx_validate_rmsd_angle.PDB_ins_code_3 ? _pdbx_validate_rmsd_angle.label_alt_id_3 ? _pdbx_validate_rmsd_angle.angle_value 123.65 _pdbx_validate_rmsd_angle.angle_target_value 120.30 _pdbx_validate_rmsd_angle.angle_deviation 3.35 _pdbx_validate_rmsd_angle.angle_standard_deviation 0.50 _pdbx_validate_rmsd_angle.linker_flag N # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 ASN A 49 ? ? -69.77 6.08 2 1 LYS A 50 ? ? 83.84 -7.54 # _pdbx_unobs_or_zero_occ_atoms.id 1 _pdbx_unobs_or_zero_occ_atoms.PDB_model_num 1 _pdbx_unobs_or_zero_occ_atoms.polymer_flag Y _pdbx_unobs_or_zero_occ_atoms.occupancy_flag 1 _pdbx_unobs_or_zero_occ_atoms.auth_asym_id A _pdbx_unobs_or_zero_occ_atoms.auth_comp_id VAL _pdbx_unobs_or_zero_occ_atoms.auth_seq_id 79 _pdbx_unobs_or_zero_occ_atoms.PDB_ins_code ? _pdbx_unobs_or_zero_occ_atoms.auth_atom_id CG1 _pdbx_unobs_or_zero_occ_atoms.label_alt_id ? _pdbx_unobs_or_zero_occ_atoms.label_asym_id A _pdbx_unobs_or_zero_occ_atoms.label_comp_id VAL _pdbx_unobs_or_zero_occ_atoms.label_seq_id 80 _pdbx_unobs_or_zero_occ_atoms.label_atom_id CG1 # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A PRO 80 ? A PRO 81 2 1 Y 1 A VAL 81 ? A VAL 82 3 1 Y 1 A PHE 82 ? A PHE 83 4 1 Y 1 A LYS 83 ? A LYS 84 5 1 Y 1 A ARG 84 ? A ARG 85 6 1 Y 1 A LYS 85 ? A LYS 86 7 1 Y 1 A ILE 86 ? A ILE 87 8 1 Y 1 A PRO 87 ? A PRO 88 # _pdbx_audit_support.funding_organization 'National Institutes of Health/National Institute Of Allergy and Infectious Diseases (NIH/NIAID)' _pdbx_audit_support.country 'United States' _pdbx_audit_support.grant_number R21AI113606 _pdbx_audit_support.ordinal 1 # _pdbx_entity_nonpoly.entity_id 2 _pdbx_entity_nonpoly.name water _pdbx_entity_nonpoly.comp_id HOH #