HEADER LUMINESCENT PROTEIN 14-APR-15 4ZB1 TITLE CRYSTAL STRUCTURE OF BLUE CHROMOPROTEIN SGBP FROM STICHODACTYLA TITLE 2 GIGANTEA COMPND MOL_ID: 1; COMPND 2 MOLECULE: BLUE CHROMOPROTEIN, SGBP; COMPND 3 CHAIN: A, B; COMPND 4 ENGINEERED: YES; COMPND 5 OTHER_DETAILS: A TRIPEPTIDE QYG CHROMOPHORE SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: STICHODACTYLA GIGANTEA; SOURCE 3 ORGANISM_TAXID: 230562; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 5 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 6 EXPRESSION_SYSTEM_CELL_LINE: BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_PLASMID: PET15B KEYWDS BLUE CHROMOPROTEIN, LUMINESCENT PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR C.C.LEE,C.Y.CHING,H.J.TSAI,A.H.J.WANG REVDAT 3 15-NOV-23 4ZB1 1 LINK ATOM REVDAT 2 08-NOV-23 4ZB1 1 REMARK REVDAT 1 12-AUG-15 4ZB1 0 JRNL AUTH C.Y.CHIANG,C.C.LEE,S.Y.LO,A.H.WANG,H.J.TSAI JRNL TITL CHROMOPHORE DEPROTONATION STATE ALTERS THE OPTICAL JRNL TITL 2 PROPERTIES OF BLUE CHROMOPROTEIN JRNL REF PLOS ONE V. 10 34108 2015 JRNL REFN ESSN 1932-6203 JRNL PMID 26218063 JRNL DOI 10.1371/JOURNAL.PONE.0134108 REMARK 2 REMARK 2 RESOLUTION. 2.25 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0049 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.25 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 25.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 86.6 REMARK 3 NUMBER OF REFLECTIONS : 24618 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.176 REMARK 3 R VALUE (WORKING SET) : 0.174 REMARK 3 FREE R VALUE : 0.217 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 1316 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.25 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.31 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1197 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 57.61 REMARK 3 BIN R VALUE (WORKING SET) : 0.1880 REMARK 3 BIN FREE R VALUE SET COUNT : 49 REMARK 3 BIN FREE R VALUE : 0.2630 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3610 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 22 REMARK 3 SOLVENT ATOMS : 226 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 26.99 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 1.06000 REMARK 3 B22 (A**2) : -0.53000 REMARK 3 B33 (A**2) : -0.53000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.270 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.207 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.134 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 5.381 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.953 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.932 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3724 ; 0.009 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): 3458 ; 0.002 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 5008 ; 1.514 ; 1.975 REMARK 3 BOND ANGLES OTHERS (DEGREES): 7994 ; 0.775 ; 3.003 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 448 ; 6.915 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 170 ;36.770 ;23.882 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 630 ;16.215 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 22 ;18.014 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 512 ; 0.086 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 4184 ; 0.006 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 864 ; 0.002 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1810 ; 1.374 ; 2.544 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 1809 ; 1.373 ; 2.543 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2248 ; 2.188 ; 3.810 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 2249 ; 2.187 ; 3.811 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1914 ; 2.211 ; 2.843 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 1915 ; 2.210 ; 2.844 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 2761 ; 3.593 ; 4.139 REMARK 3 LONG RANGE B REFINED ATOMS (A**2): 4067 ; 5.608 ;20.650 REMARK 3 LONG RANGE B OTHER ATOMS (A**2): 4068 ; 5.607 ;20.657 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 4ZB1 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 16-APR-15. REMARK 100 THE DEPOSITION ID IS D_1000208968. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 15-MAY-14 REMARK 200 TEMPERATURE (KELVIN) : 95 REMARK 200 PH : 5.5 REMARK 200 NUMBER OF CRYSTALS USED : NULL REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : RIGAKU FR-E+ SUPERBRIGHT REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.5418 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : RIGAKU RAXIS HTC REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 29027 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.250 REMARK 200 RESOLUTION RANGE LOW (A) : 25.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 96.6 REMARK 200 DATA REDUNDANCY : 3.600 REMARK 200 R MERGE (I) : 0.09500 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 11.9000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.25 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.33 REMARK 200 COMPLETENESS FOR SHELL (%) : 96.5 REMARK 200 DATA REDUNDANCY IN SHELL : 3.20 REMARK 200 R MERGE FOR SHELL (I) : 0.34500 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 3.200 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: 2IB6 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 55.13 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.74 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 24%(W/V) PEG600, 0.2M IMIDAZOLE REMARK 280 MALATE, PH 5.5, VAPOR DIFFUSION, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 30.54750 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 77.36800 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 32.38600 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 77.36800 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 30.54750 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 32.38600 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 4190 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 17980 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -24.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A -19 REMARK 465 GLY A -18 REMARK 465 SER A -17 REMARK 465 SER A -16 REMARK 465 HIS A -15 REMARK 465 HIS A -14 REMARK 465 HIS A -13 REMARK 465 HIS A -12 REMARK 465 HIS A -11 REMARK 465 HIS A -10 REMARK 465 SER A -9 REMARK 465 SER A -8 REMARK 465 GLY A -7 REMARK 465 LEU A -6 REMARK 465 VAL A -5 REMARK 465 PRO A -4 REMARK 465 ARG A -3 REMARK 465 GLY A -2 REMARK 465 SER A -1 REMARK 465 HIS A 0 REMARK 465 MET A 1 REMARK 465 VAL A 2 REMARK 465 MET B -19 REMARK 465 GLY B -18 REMARK 465 SER B -17 REMARK 465 SER B -16 REMARK 465 HIS B -15 REMARK 465 HIS B -14 REMARK 465 HIS B -13 REMARK 465 HIS B -12 REMARK 465 HIS B -11 REMARK 465 HIS B -10 REMARK 465 SER B -9 REMARK 465 SER B -8 REMARK 465 GLY B -7 REMARK 465 LEU B -6 REMARK 465 VAL B -5 REMARK 465 PRO B -4 REMARK 465 ARG B -3 REMARK 465 GLY B -2 REMARK 465 SER B -1 REMARK 465 HIS B 0 REMARK 465 MET B 1 REMARK 465 VAL B 2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O ASN A 231 NH2 ARG B 197 2.15 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 197 NE - CZ - NH2 ANGL. DEV. = -3.9 DEGREES REMARK 500 ARG B 197 NE - CZ - NH1 ANGL. DEV. = 3.5 DEGREES REMARK 500 ARG B 197 NE - CZ - NH2 ANGL. DEV. = -4.9 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 PRO A 51 34.43 -82.59 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 ALA A 3 ILE A 4 145.92 REMARK 500 ALA B 3 ILE B 4 142.89 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue TOE A 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue TOE B 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for Di-peptide PHE B 61 and CRQ B REMARK 800 62 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for Di-peptide CRQ B 62 and SER B REMARK 800 65 REMARK 999 REMARK 999 SEQUENCE REMARK 999 THE SEQUENCE OF THIS PROTEIN WAS NOT AVAILABLE AT THE UNIPROT REMARK 999 KNOWLEDGEBASE DATABASE (UNIPROTKB) AT THE TIME OF DEPOSITION. DBREF 4ZB1 A -19 231 PDB 4ZB1 4ZB1 -19 231 DBREF 4ZB1 B -19 231 PDB 4ZB1 4ZB1 -19 231 SEQRES 1 A 249 MET GLY SER SER HIS HIS HIS HIS HIS HIS SER SER GLY SEQRES 2 A 249 LEU VAL PRO ARG GLY SER HIS MET VAL ALA ILE PRO GLU SEQRES 3 A 249 ASN VAL ARG ILE LYS ALA PHE MET GLU GLY ALA ILE ASN SEQRES 4 A 249 ASN HIS HIS PHE LYS CYS GLU ALA GLU GLY GLU GLY LYS SEQRES 5 A 249 PRO TYR GLU GLY THR GLN LEU GLU ARG ILE ARG VAL THR SEQRES 6 A 249 GLU GLY GLY PRO LEU PRO PHE SER PHE ASP ILE LEU SER SEQRES 7 A 249 PRO HIS PHE CRQ SER VAL ALA ILE THR LYS TYR LEU SER SEQRES 8 A 249 GLY ILE PRO ASP TYR PHE LYS GLN SER PHE PRO GLU GLY SEQRES 9 A 249 PHE SER TRP GLU ARG THR THR MET TYR GLU ASP GLY GLY SEQRES 10 A 249 TYR VAL THR ALA HIS GLN ASP THR SER LEU ASP GLY ASN SEQRES 11 A 249 CYS LEU VAL TYR LYS ILE LYS VAL ILE GLY SER ASN LEU SEQRES 12 A 249 PRO ALA ASN GLY PRO VAL MET GLN ASN LYS THR ARG GLY SEQRES 13 A 249 TRP GLU PRO CYS THR GLU MET ARG TYR VAL ARG GLY GLY SEQRES 14 A 249 VAL LEU CYS GLY GLN SER LEU MET ALA LEU LYS CYS ALA SEQRES 15 A 249 ASP GLY ASN HIS LEU THR CYS GLN LEU ARG THR THR TYR SEQRES 16 A 249 ARG SER LYS LYS PRO ALA LYS LYS LEU GLN MET PRO ALA SEQRES 17 A 249 PHE HIS PHE SER ASP HIS ARG PRO GLU ILE LEU LYS VAL SEQRES 18 A 249 SER GLU ASN GLY ASN LEU MET GLU GLN TYR GLU MET SER SEQRES 19 A 249 VAL GLY ARG TYR CYS GLU SER VAL PRO SER LYS LEU GLY SEQRES 20 A 249 HIS ASN SEQRES 1 B 249 MET GLY SER SER HIS HIS HIS HIS HIS HIS SER SER GLY SEQRES 2 B 249 LEU VAL PRO ARG GLY SER HIS MET VAL ALA ILE PRO GLU SEQRES 3 B 249 ASN VAL ARG ILE LYS ALA PHE MET GLU GLY ALA ILE ASN SEQRES 4 B 249 ASN HIS HIS PHE LYS CYS GLU ALA GLU GLY GLU GLY LYS SEQRES 5 B 249 PRO TYR GLU GLY THR GLN LEU GLU ARG ILE ARG VAL THR SEQRES 6 B 249 GLU GLY GLY PRO LEU PRO PHE SER PHE ASP ILE LEU SER SEQRES 7 B 249 PRO HIS PHE CRQ SER VAL ALA ILE THR LYS TYR LEU SER SEQRES 8 B 249 GLY ILE PRO ASP TYR PHE LYS GLN SER PHE PRO GLU GLY SEQRES 9 B 249 PHE SER TRP GLU ARG THR THR MET TYR GLU ASP GLY GLY SEQRES 10 B 249 TYR VAL THR ALA HIS GLN ASP THR SER LEU ASP GLY ASN SEQRES 11 B 249 CYS LEU VAL TYR LYS ILE LYS VAL ILE GLY SER ASN LEU SEQRES 12 B 249 PRO ALA ASN GLY PRO VAL MET GLN ASN LYS THR ARG GLY SEQRES 13 B 249 TRP GLU PRO CYS THR GLU MET ARG TYR VAL ARG GLY GLY SEQRES 14 B 249 VAL LEU CYS GLY GLN SER LEU MET ALA LEU LYS CYS ALA SEQRES 15 B 249 ASP GLY ASN HIS LEU THR CYS GLN LEU ARG THR THR TYR SEQRES 16 B 249 ARG SER LYS LYS PRO ALA LYS LYS LEU GLN MET PRO ALA SEQRES 17 B 249 PHE HIS PHE SER ASP HIS ARG PRO GLU ILE LEU LYS VAL SEQRES 18 B 249 SER GLU ASN GLY ASN LEU MET GLU GLN TYR GLU MET SER SEQRES 19 B 249 VAL GLY ARG TYR CYS GLU SER VAL PRO SER LYS LEU GLY SEQRES 20 B 249 HIS ASN HET CRQ A 62 24 HET CRQ B 62 24 HET TOE A 301 11 HET TOE B 301 11 HETNAM CRQ [2-(3-CARBAMOYL-1-IMINO-PROPYL)-4-(4-HYDROXY- HETNAM 2 CRQ BENZYLIDENE)-5-OXO-4,5-DIHYDRO-IMIDAZOL-1-YL]-ACETIC HETNAM 3 CRQ ACID HETNAM TOE 2-[2-(2-METHOXY-ETHOXY)-ETHOXY]-ETHOXYL HETSYN CRQ CHROMOPHORE (GLN-TYR-GLY) FORMUL 1 CRQ 2(C16 H16 N4 O5) FORMUL 3 TOE 2(C7 H16 O4) FORMUL 5 HOH *226(H2 O) HELIX 1 AA1 SER A 53 PHE A 61 5 9 HELIX 2 AA2 PHE A 79 PHE A 83 5 5 HELIX 3 AA3 PRO A 182 LEU A 186 5 5 HELIX 4 AA4 GLU A 205 GLY A 207 5 3 HELIX 5 AA5 SER B 53 PHE B 61 5 9 HELIX 6 AA6 PHE B 79 PHE B 83 5 5 HELIX 7 AA7 PRO B 182 LEU B 186 5 5 SHEET 1 AA111 THR A 136 TRP A 139 0 SHEET 2 AA111 VAL A 152 CYS A 163 -1 O LYS A 162 N ARG A 137 SHEET 3 AA111 HIS A 168 SER A 179 -1 O TYR A 177 N LEU A 153 SHEET 4 AA111 PHE A 87 TYR A 95 -1 N SER A 88 O ARG A 178 SHEET 5 AA111 TYR A 100 ASP A 110 -1 O THR A 107 N PHE A 87 SHEET 6 AA111 CYS A 113 SER A 123 -1 O CYS A 113 N ASP A 110 SHEET 7 AA111 VAL A 8 ILE A 18 1 N ALA A 17 O GLY A 122 SHEET 8 AA111 HIS A 21 GLY A 31 -1 O CYS A 25 N MET A 14 SHEET 9 AA111 THR A 37 GLU A 46 -1 O ARG A 43 N GLU A 26 SHEET 10 AA111 LEU A 209 ARG A 219 -1 O MET A 210 N ILE A 42 SHEET 11 AA111 LYS A 70 TYR A 71 1 N LYS A 70 O GLY A 218 SHEET 1 AA2 6 GLU A 199 SER A 204 0 SHEET 2 AA2 6 LEU A 209 ARG A 219 -1 O TYR A 213 N GLU A 199 SHEET 3 AA2 6 HIS A 192 HIS A 196 -1 N PHE A 193 O ARG A 219 SHEET 4 AA2 6 CYS A 142 ARG A 149 -1 N GLU A 144 O SER A 194 SHEET 5 AA2 6 VAL A 152 CYS A 163 -1 O CYS A 154 N TYR A 147 SHEET 6 AA2 6 THR A 136 TRP A 139 -1 N ARG A 137 O LYS A 162 SHEET 1 AA311 LYS B 70 TYR B 71 0 SHEET 2 AA311 LEU B 209 ARG B 219 1 O SER B 216 N LYS B 70 SHEET 3 AA311 THR B 37 GLU B 46 -1 N ILE B 42 O MET B 210 SHEET 4 AA311 HIS B 21 LYS B 32 -1 N GLU B 28 O ARG B 41 SHEET 5 AA311 VAL B 8 ILE B 18 -1 N ALA B 12 O ALA B 27 SHEET 6 AA311 CYS B 113 SER B 123 1 O LEU B 114 N LYS B 11 SHEET 7 AA311 TYR B 100 ASP B 110 -1 N ASP B 110 O CYS B 113 SHEET 8 AA311 PHE B 87 TYR B 95 -1 N PHE B 87 O THR B 107 SHEET 9 AA311 HIS B 168 SER B 179 -1 O ARG B 178 N SER B 88 SHEET 10 AA311 VAL B 152 CYS B 163 -1 N LEU B 153 O TYR B 177 SHEET 11 AA311 THR B 136 TRP B 139 -1 N ARG B 137 O LYS B 162 SHEET 1 AA4 6 LYS B 70 TYR B 71 0 SHEET 2 AA4 6 LEU B 209 ARG B 219 1 O SER B 216 N LYS B 70 SHEET 3 AA4 6 HIS B 192 SER B 204 -1 N PHE B 193 O ARG B 219 SHEET 4 AA4 6 CYS B 142 ARG B 149 -1 N GLU B 144 O SER B 194 SHEET 5 AA4 6 VAL B 152 CYS B 163 -1 O CYS B 154 N TYR B 147 SHEET 6 AA4 6 THR B 136 TRP B 139 -1 N ARG B 137 O LYS B 162 LINK C PHE A 61 N1 CRQ A 62 1555 1555 1.25 LINK C3 CRQ A 62 N SER A 65 1555 1555 1.33 LINK C PHE B 61 N1 CRQ B 62 1555 1555 1.27 LINK C3 CRQ B 62 N SER B 65 1555 1555 1.32 CISPEP 1 GLY A 48 PRO A 49 0 -4.93 CISPEP 2 PHE A 83 PRO A 84 0 6.62 CISPEP 3 GLY B 48 PRO B 49 0 -11.31 CISPEP 4 PHE B 83 PRO B 84 0 10.67 SITE 1 AC1 5 GLU A 26 GLU A 28 ARG A 41 ARG A 43 SITE 2 AC1 5 THR A 45 SITE 1 AC2 6 GLY A 229 ASN A 231 ARG B 9 LYS B 11 SITE 2 AC2 6 PHE B 13 ASP B 110 SITE 1 AC3 22 MET B 14 GLN B 38 GLU B 40 ILE B 42 SITE 2 AC3 22 LEU B 57 SER B 58 PRO B 59 HIS B 60 SITE 3 AC3 22 SER B 65 VAL B 66 TRP B 89 ARG B 91 SITE 4 AC3 22 TYR B 116 GLU B 144 SER B 157 LEU B 173 SITE 5 AC3 22 TYR B 177 GLN B 212 TYR B 213 GLU B 214 SITE 6 AC3 22 HOH B 406 HOH B 421 SITE 1 AC4 22 GLN B 38 GLU B 40 SER B 58 PRO B 59 SITE 2 AC4 22 HIS B 60 PHE B 61 VAL B 66 ALA B 67 SITE 3 AC4 22 ILE B 68 TRP B 89 ARG B 91 TYR B 116 SITE 4 AC4 22 GLU B 144 SER B 157 LEU B 173 TYR B 177 SITE 5 AC4 22 GLN B 212 TYR B 213 GLU B 214 HOH B 406 SITE 6 AC4 22 HOH B 409 HOH B 421 CRYST1 61.095 64.772 154.736 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.016368 0.000000 0.000000 0.00000 SCALE2 0.000000 0.015439 0.000000 0.00000 SCALE3 0.000000 0.000000 0.006463 0.00000