HEADER HYDROLASE/HYDROLASE INHIBITOR 14-APR-15 4ZBK TITLE CRYSTAL STRUCTURE OF HUMAN GGT1 IN COMPLEX WITH GGSTOP INHIBITOR COMPND MOL_ID: 1; COMPND 2 MOLECULE: GAMMA-GLUTAMYLTRANSPEPTIDASE 1; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: LARGE SUBUNIT RESIDUES 28-380; COMPND 5 SYNONYM: GGT 1,GAMMA-GLUTAMYLTRANSFERASE 1,GLUTATHIONE HYDROLASE 1, COMPND 6 LEUKOTRIENE-C4 HYDROLASE; COMPND 7 EC: 2.3.2.2,3.4.19.13,3.4.19.14; COMPND 8 ENGINEERED: YES; COMPND 9 MOL_ID: 2; COMPND 10 MOLECULE: GAMMA-GLUTAMYLTRANSPEPTIDASE 1; COMPND 11 CHAIN: B; COMPND 12 FRAGMENT: SMALL SUBUNIT RESIDUES 381-569; COMPND 13 SYNONYM: GGT 1,GAMMA-GLUTAMYLTRANSFERASE 1,GLUTATHIONE HYDROLASE 1, COMPND 14 LEUKOTRIENE-C4 HYDROLASE; COMPND 15 EC: 2.3.2.2,3.4.19.13,3.4.19.14; COMPND 16 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: GGT1, GGT; SOURCE 6 EXPRESSION_SYSTEM: PICHIA; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 4919; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: X-33; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PPICZAA; SOURCE 11 MOL_ID: 2; SOURCE 12 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 13 ORGANISM_COMMON: HUMAN; SOURCE 14 ORGANISM_TAXID: 9606; SOURCE 15 GENE: GGT1, GGT; SOURCE 16 EXPRESSION_SYSTEM: PICHIA; SOURCE 17 EXPRESSION_SYSTEM_TAXID: 4919; SOURCE 18 EXPRESSION_SYSTEM_STRAIN: X-33; SOURCE 19 EXPRESSION_SYSTEM_VECTOR_TYPE: PLAZMID; SOURCE 20 EXPRESSION_SYSTEM_PLASMID: PPICZAA KEYWDS ENZYME INHIBITOR COMPLEX, NTN-HYDROLASE FAMILY, N- GLYCOSYLATION, KEYWDS 2 CELL SURFACE, HYDROLASE, HYDROLASE-HYDROLASE INHIBITOR COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR S.TERZYAN,M.HANIGAN REVDAT 8 23-OCT-24 4ZBK 1 REMARK REVDAT 7 27-SEP-23 4ZBK 1 HETSYN REVDAT 6 29-JUL-20 4ZBK 1 COMPND REMARK HETNAM LINK REVDAT 6 2 1 SITE REVDAT 5 25-DEC-19 4ZBK 1 REMARK REVDAT 4 20-SEP-17 4ZBK 1 SOURCE JRNL REMARK REVDAT 3 29-JUL-15 4ZBK 1 JRNL REVDAT 2 10-JUN-15 4ZBK 1 JRNL REVDAT 1 03-JUN-15 4ZBK 0 JRNL AUTH S.S.TERZYAN,A.W.BURGETT,A.HEROUX,C.A.SMITH,B.H.MOOERS, JRNL AUTH 2 M.H.HANIGAN JRNL TITL HUMAN GAMMA-GLUTAMYL TRANSPEPTIDASE 1: STRUCTURES OF THE JRNL TITL 2 FREE ENZYME, INHIBITOR-BOUND TETRAHEDRAL TRANSITION STATES, JRNL TITL 3 AND GLUTAMATE-BOUND ENZYME REVEAL NOVEL MOVEMENT WITHIN THE JRNL TITL 4 ACTIVE SITE DURING CATALYSIS. JRNL REF J.BIOL.CHEM. V. 290 17576 2015 JRNL REFN ESSN 1083-351X JRNL PMID 26013825 JRNL DOI 10.1074/JBC.M115.659680 REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH M.WEST,Y.CHEN,S.WICKHAM,A.HEROUX,K.CAHILL,M.HANIGAN,B.MOOERS REMARK 1 TITL NOVEL INSIGHTS INTO EUKARYOTIC GAMMA-GLUTAMYL TRANSPEPTIDASE REMARK 1 TITL 2 1 FROM THE CRYSTAL STRUCTURE OF THE GLUTAMATE-BOUND HUMAN REMARK 1 TITL 3 ENZYME. REMARK 1 REF J.BIOL. CHEM V. 288 31902 2013 REMARK 1 REFN ISSN 0021-9258 REMARK 1 PMID 24047895 REMARK 2 REMARK 2 RESOLUTION. 2.18 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0073 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.18 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 47.13 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 96.4 REMARK 3 NUMBER OF REFLECTIONS : 32828 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.162 REMARK 3 R VALUE (WORKING SET) : 0.159 REMARK 3 FREE R VALUE : 0.218 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1715 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : NULL REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.18 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.24 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2035 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 81.39 REMARK 3 BIN R VALUE (WORKING SET) : 0.2810 REMARK 3 BIN FREE R VALUE SET COUNT : 99 REMARK 3 BIN FREE R VALUE : 0.3350 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 4043 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 122 REMARK 3 SOLVENT ATOMS : 337 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 32.08 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 40.92 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.03000 REMARK 3 B22 (A**2) : 0.05000 REMARK 3 B33 (A**2) : -0.02000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.201 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.182 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.136 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 5.527 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.969 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.944 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 4336 ; 0.010 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 5911 ; 1.396 ; 1.981 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 553 ; 6.048 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 189 ;37.038 ;23.439 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 680 ;14.398 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 35 ;16.012 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 683 ; 0.091 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 3298 ; 0.006 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2152 ; 2.301 ; 3.755 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2692 ; 3.426 ; 5.620 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 2180 ; 3.381 ; 4.220 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: U VALUES : REFINED INDIVIDUALLY REMARK 4 REMARK 4 4ZBK COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 15-APR-15. REMARK 100 THE DEPOSITION ID IS D_1000208993. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 08-AUG-13 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.0-6.3 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : NSLS REMARK 200 BEAMLINE : X25 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.1 REMARK 200 MONOCHROMATOR : SI 111 DOUBLE CRYSTAL REMARK 200 OPTICS : MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 34573 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.180 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 96.6 REMARK 200 DATA REDUNDANCY : 5.800 REMARK 200 R MERGE (I) : 0.07600 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 9.0000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.18 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.22 REMARK 200 COMPLETENESS FOR SHELL (%) : 84.1 REMARK 200 DATA REDUNDANCY IN SHELL : 3.70 REMARK 200 R MERGE FOR SHELL (I) : 0.37400 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.700 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: FOURIER SYNTHESIS REMARK 200 SOFTWARE USED: REFMAC 5.8.0073 REMARK 200 STARTING MODEL: 4Z9O REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 58.06 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.93 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PEG3350, NH4CL, PH 6.3, VAPOR REMARK 280 DIFFUSION, HANGING DROP, TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 2 2 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -X,Y,-Z+1/2 REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 52.09450 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 52.09450 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 52.85100 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 61.77550 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 52.85100 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 61.77550 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 52.09450 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 52.85100 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 61.77550 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 52.09450 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 52.85100 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 61.77550 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 15130 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 19540 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -88.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 869 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 SER A 28 REMARK 465 ALA A 29 REMARK 465 SER A 30 REMARK 465 LYS A 31 REMARK 465 GLU A 32 REMARK 465 PRO A 33 REMARK 465 PRO A 376 REMARK 465 ASP A 377 REMARK 465 ASP A 378 REMARK 465 GLY A 379 REMARK 465 GLY A 380 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 100 CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 ND2 ASN A 230 C2 NAG A 605 2.13 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 79 50.90 -119.85 REMARK 500 HIS A 148 -6.98 -140.21 REMARK 500 ARG A 199 3.45 57.27 REMARK 500 ASN A 230 57.31 -157.82 REMARK 500 ASN B 401 -111.82 79.10 REMARK 500 ASN B 431 -79.08 -89.29 REMARK 500 CYS B 454 60.85 -154.60 REMARK 500 CYS B 454 66.72 -157.56 REMARK 500 LEU B 508 -56.40 71.72 REMARK 500 ASN B 511 56.56 -95.62 REMARK 500 HIS B 531 9.96 84.22 REMARK 500 THR B 539 -88.06 -110.10 REMARK 500 ALA B 542 175.96 68.81 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA A 609 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH A 851 O REMARK 620 2 ALA B 556 O 129.5 REMARK 620 3 HOH B1242 O 123.2 106.5 REMARK 620 N 1 2 DBREF 4ZBK A 28 380 UNP P19440 GGT1_HUMAN 28 380 DBREF 4ZBK B 381 569 UNP P19440 GGT1_HUMAN 381 569 SEQADV 4ZBK ALA A 272 UNP P19440 VAL 272 VARIANT SEQRES 1 A 353 SER ALA SER LYS GLU PRO ASP ASN HIS VAL TYR THR ARG SEQRES 2 A 353 ALA ALA VAL ALA ALA ASP ALA LYS GLN CYS SER LYS ILE SEQRES 3 A 353 GLY ARG ASP ALA LEU ARG ASP GLY GLY SER ALA VAL ASP SEQRES 4 A 353 ALA ALA ILE ALA ALA LEU LEU CYS VAL GLY LEU MET ASN SEQRES 5 A 353 ALA HIS SER MET GLY ILE GLY GLY GLY LEU PHE LEU THR SEQRES 6 A 353 ILE TYR ASN SER THR THR ARG LYS ALA GLU VAL ILE ASN SEQRES 7 A 353 ALA ARG GLU VAL ALA PRO ARG LEU ALA PHE ALA THR MET SEQRES 8 A 353 PHE ASN SER SER GLU GLN SER GLN LYS GLY GLY LEU SER SEQRES 9 A 353 VAL ALA VAL PRO GLY GLU ILE ARG GLY TYR GLU LEU ALA SEQRES 10 A 353 HIS GLN ARG HIS GLY ARG LEU PRO TRP ALA ARG LEU PHE SEQRES 11 A 353 GLN PRO SER ILE GLN LEU ALA ARG GLN GLY PHE PRO VAL SEQRES 12 A 353 GLY LYS GLY LEU ALA ALA ALA LEU GLU ASN LYS ARG THR SEQRES 13 A 353 VAL ILE GLU GLN GLN PRO VAL LEU CYS GLU VAL PHE CYS SEQRES 14 A 353 ARG ASP ARG LYS VAL LEU ARG GLU GLY GLU ARG LEU THR SEQRES 15 A 353 LEU PRO GLN LEU ALA ASP THR TYR GLU THR LEU ALA ILE SEQRES 16 A 353 GLU GLY ALA GLN ALA PHE TYR ASN GLY SER LEU THR ALA SEQRES 17 A 353 GLN ILE VAL LYS ASP ILE GLN ALA ALA GLY GLY ILE VAL SEQRES 18 A 353 THR ALA GLU ASP LEU ASN ASN TYR ARG ALA GLU LEU ILE SEQRES 19 A 353 GLU HIS PRO LEU ASN ILE SER LEU GLY ASP ALA VAL LEU SEQRES 20 A 353 TYR MET PRO SER ALA PRO LEU SER GLY PRO VAL LEU ALA SEQRES 21 A 353 LEU ILE LEU ASN ILE LEU LYS GLY TYR ASN PHE SER ARG SEQRES 22 A 353 GLU SER VAL GLU SER PRO GLU GLN LYS GLY LEU THR TYR SEQRES 23 A 353 HIS ARG ILE VAL GLU ALA PHE ARG PHE ALA TYR ALA LYS SEQRES 24 A 353 ARG THR LEU LEU GLY ASP PRO LYS PHE VAL ASP VAL THR SEQRES 25 A 353 GLU VAL VAL ARG ASN MET THR SER GLU PHE PHE ALA ALA SEQRES 26 A 353 GLN LEU ARG ALA GLN ILE SER ASP ASP THR THR HIS PRO SEQRES 27 A 353 ILE SER TYR TYR LYS PRO GLU PHE TYR THR PRO ASP ASP SEQRES 28 A 353 GLY GLY SEQRES 1 B 189 THR ALA HIS LEU SER VAL VAL ALA GLU ASP GLY SER ALA SEQRES 2 B 189 VAL SER ALA THR SER THR ILE ASN LEU TYR PHE GLY SER SEQRES 3 B 189 LYS VAL ARG SER PRO VAL SER GLY ILE LEU PHE ASN ASN SEQRES 4 B 189 GLU MET ASP ASP PHE SER SER PRO SER ILE THR ASN GLU SEQRES 5 B 189 PHE GLY VAL PRO PRO SER PRO ALA ASN PHE ILE GLN PRO SEQRES 6 B 189 GLY LYS GLN PRO LEU SER SER MET CYS PRO THR ILE MET SEQRES 7 B 189 VAL GLY GLN ASP GLY GLN VAL ARG MET VAL VAL GLY ALA SEQRES 8 B 189 ALA GLY GLY THR GLN ILE THR THR ALA THR ALA LEU ALA SEQRES 9 B 189 ILE ILE TYR ASN LEU TRP PHE GLY TYR ASP VAL LYS ARG SEQRES 10 B 189 ALA VAL GLU GLU PRO ARG LEU HIS ASN GLN LEU LEU PRO SEQRES 11 B 189 ASN VAL THR THR VAL GLU ARG ASN ILE ASP GLN ALA VAL SEQRES 12 B 189 THR ALA ALA LEU GLU THR ARG HIS HIS HIS THR GLN ILE SEQRES 13 B 189 ALA SER THR PHE ILE ALA VAL VAL GLN ALA ILE VAL ARG SEQRES 14 B 189 THR ALA GLY GLY TRP ALA ALA ALA SER ASP SER ARG LYS SEQRES 15 B 189 GLY GLY GLU PRO ALA GLY TYR HET NAG A 601 14 HET NAG A 602 14 HET NAG A 603 14 HET NAG A 604 14 HET NAG A 605 14 HET MES A 606 12 HET MES A 607 12 HET CL A 608 1 HET NA A 609 1 HET NAG B1101 14 HET 4M8 B1102 11 HET CL B1103 1 HETNAM NAG 2-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE HETNAM MES 2-(N-MORPHOLINO)-ETHANESULFONIC ACID HETNAM CL CHLORIDE ION HETNAM NA SODIUM ION HETNAM 4M8 (2S)-2-AMINO-4-[(S)-HYDROXY(METHOXY)PHOSPHORYL]BUTANOIC HETNAM 2 4M8 ACID HETSYN NAG N-ACETYL-BETA-D-GLUCOSAMINE; 2-ACETAMIDO-2-DEOXY-BETA- HETSYN 2 NAG D-GLUCOSE; 2-ACETAMIDO-2-DEOXY-D-GLUCOSE; 2-ACETAMIDO- HETSYN 3 NAG 2-DEOXY-GLUCOSE; N-ACETYL-D-GLUCOSAMINE FORMUL 3 NAG 6(C8 H15 N O6) FORMUL 8 MES 2(C6 H13 N O4 S) FORMUL 10 CL 2(CL 1-) FORMUL 11 NA NA 1+ FORMUL 13 4M8 C5 H12 N O5 P FORMUL 15 HOH *337(H2 O) HELIX 1 AA1 ALA A 47 ASP A 60 1 14 HELIX 2 AA2 SER A 63 ASN A 79 1 17 HELIX 3 AA3 SER A 121 LYS A 127 1 7 HELIX 4 AA4 GLY A 128 VAL A 132 5 5 HELIX 5 AA5 GLY A 136 GLY A 149 1 14 HELIX 6 AA6 PRO A 152 GLY A 167 1 16 HELIX 7 AA7 GLY A 171 LYS A 181 1 11 HELIX 8 AA8 LYS A 181 GLN A 188 1 8 HELIX 9 AA9 GLN A 188 PHE A 195 1 8 HELIX 10 AB1 LEU A 210 GLY A 224 1 15 HELIX 11 AB2 ALA A 225 ASN A 230 1 6 HELIX 12 AB3 LEU A 233 ALA A 244 1 12 HELIX 13 AB4 THR A 249 TYR A 256 1 8 HELIX 14 AB5 SER A 282 GLY A 295 1 14 HELIX 15 AB6 SER A 299 GLU A 304 5 6 HELIX 16 AB7 SER A 305 THR A 328 1 24 HELIX 17 AB8 VAL A 338 SER A 347 1 10 HELIX 18 AB9 SER A 347 ALA A 356 1 10 HELIX 19 AC1 PRO A 365 LYS A 370 5 6 HELIX 20 AC2 ASN B 419 PHE B 424 5 6 HELIX 21 AC3 SER B 438 PHE B 442 5 5 HELIX 22 AC4 THR B 475 TRP B 490 1 16 HELIX 23 AC5 ASP B 494 GLU B 501 1 8 HELIX 24 AC6 ASP B 520 THR B 529 1 10 SHEET 1 AA1 7 VAL A 37 TYR A 38 0 SHEET 2 AA1 7 GLY B 553 SER B 558 -1 O TRP B 554 N TYR A 38 SHEET 3 AA1 7 VAL B 543 THR B 550 -1 N THR B 550 O GLY B 553 SHEET 4 AA1 7 VAL B 465 ALA B 472 -1 N VAL B 468 O ILE B 547 SHEET 5 AA1 7 THR B 456 GLY B 460 -1 N MET B 458 O ARG B 466 SHEET 6 AA1 7 ALA A 272 MET A 276 -1 N TYR A 275 O ILE B 457 SHEET 7 AA1 7 LEU A 265 LEU A 269 -1 N LEU A 269 O ALA A 272 SHEET 1 AA2 7 GLU A 259 ILE A 261 0 SHEET 2 AA2 7 LYS A 100 ALA A 106 -1 N ASN A 105 O GLU A 259 SHEET 3 AA2 7 GLY A 88 ASN A 95 -1 N LEU A 91 O ILE A 104 SHEET 4 AA2 7 ALA B 393 THR B 399 -1 O SER B 395 N THR A 92 SHEET 5 AA2 7 ALA B 382 VAL B 387 -1 N VAL B 386 O VAL B 394 SHEET 6 AA2 7 ALA A 42 ALA A 44 -1 N ALA A 44 O SER B 385 SHEET 7 AA2 7 ALA B 567 GLY B 568 -1 O ALA B 567 N VAL A 43 SHEET 1 AA3 2 PHE A 168 PRO A 169 0 SHEET 2 AA3 2 ARG A 207 LEU A 208 -1 O LEU A 208 N PHE A 168 SHEET 1 AA4 2 CYS A 196 ARG A 197 0 SHEET 2 AA4 2 LYS A 200 VAL A 201 -1 O LYS A 200 N ARG A 197 SHEET 1 AA5 3 LEU B 504 HIS B 505 0 SHEET 2 AA5 3 THR B 513 VAL B 515 -1 O THR B 514 N HIS B 505 SHEET 3 AA5 3 THR B 534 ILE B 536 1 O GLN B 535 N VAL B 515 SSBOND 1 CYS A 50 CYS A 74 1555 1555 2.10 SSBOND 2 CYS A 192 CYS A 196 1555 1555 2.08 LINK ND2 ASN A 95 C1 NAG A 601 1555 1555 1.44 LINK ND2 ASN A 120 C1 NAG A 602 1555 1555 1.44 LINK ND2 ASN A 230 C1 NAG A 605 1555 1555 1.44 LINK ND2 ASN A 266 C1 NAG A 604 1555 1555 1.44 LINK ND2 ASN A 344 C1 NAG A 603 1555 1555 1.43 LINK OG1 THR B 381 P 4M8 B1102 1555 1555 1.61 LINK ND2 ASN B 511 C1 NAG B1101 1555 1555 1.42 LINK NA NA A 609 O HOH A 851 1555 1555 2.80 LINK NA NA A 609 O ALA B 556 1555 1555 2.75 LINK NA NA A 609 O HOH B1242 1555 1555 2.79 CISPEP 1 ALA A 279 PRO A 280 0 16.53 CISPEP 2 LEU B 509 PRO B 510 0 0.62 CRYST1 105.702 123.551 104.189 90.00 90.00 90.00 C 2 2 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.009461 0.000000 0.000000 0.00000 SCALE2 0.000000 0.008094 0.000000 0.00000 SCALE3 0.000000 0.000000 0.009598 0.00000