HEADER OXIDOREDUCTASE 15-APR-15 4ZCD TITLE RENALASE IN COMPLEX WITH NAD+ COMPND MOL_ID: 1; COMPND 2 MOLECULE: RENALASE; COMPND 3 CHAIN: A, B; COMPND 4 EC: 1.6.3.5; COMPND 5 ENGINEERED: YES; COMPND 6 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: PSEUDOMONAS SYRINGAE PV. PHASEOLICOLA (STRAIN SOURCE 3 1448A / RACE 6); SOURCE 4 ORGANISM_TAXID: 264730; SOURCE 5 STRAIN: 1448A / RACE 6; SOURCE 6 VARIANT: RACE 6; SOURCE 7 GENE: PSPPH_1014; SOURCE 8 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 9 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 10 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 11 EXPRESSION_SYSTEM_PLASMID: PET21-NESG KEYWDS RENALASE, OXIDASE, FLAVOENZYME, OXIDOREDUCTASE EXPDTA X-RAY DIFFRACTION AUTHOR N.R.SILVAGGI,G.R.MORAN,J.V.ROMAN REVDAT 4 27-SEP-23 4ZCD 1 REMARK REVDAT 3 27-NOV-19 4ZCD 1 REMARK REVDAT 2 06-SEP-17 4ZCD 1 SOURCE JRNL REMARK REVDAT 1 15-JUL-15 4ZCD 0 JRNL AUTH M.R.HOAG,J.ROMAN,B.A.BEAUPRE,N.R.SILVAGGI,G.R.MORAN JRNL TITL BACTERIAL RENALASE: STRUCTURE AND KINETICS OF AN ENZYME WITH JRNL TITL 2 2- AND 6-DIHYDRO-BETA-NAD(P) OXIDASE ACTIVITY FROM JRNL TITL 3 PSEUDOMONAS PHASEOLICOLA. JRNL REF BIOCHEMISTRY V. 54 3791 2015 JRNL REFN ISSN 0006-2960 JRNL PMID 26016690 JRNL DOI 10.1021/ACS.BIOCHEM.5B00451 REMARK 2 REMARK 2 RESOLUTION. 1.66 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX DEV_1965 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.66 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 33.20 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.440 REMARK 3 COMPLETENESS FOR RANGE (%) : 98.8 REMARK 3 NUMBER OF REFLECTIONS : 76006 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.152 REMARK 3 R VALUE (WORKING SET) : 0.151 REMARK 3 FREE R VALUE : 0.176 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 3.910 REMARK 3 FREE R VALUE TEST SET COUNT : 2971 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 33.2019 - 3.5760 1.00 7637 312 0.1470 0.1654 REMARK 3 2 3.5760 - 2.8389 1.00 7463 304 0.1532 0.1585 REMARK 3 3 2.8389 - 2.4801 1.00 7371 295 0.1478 0.1771 REMARK 3 4 2.4801 - 2.2534 1.00 7376 306 0.1394 0.1730 REMARK 3 5 2.2534 - 2.0919 0.99 7294 298 0.1419 0.1753 REMARK 3 6 2.0919 - 1.9686 1.00 7330 298 0.1470 0.1868 REMARK 3 7 1.9686 - 1.8700 0.99 7274 287 0.1465 0.1675 REMARK 3 8 1.8700 - 1.7886 0.99 7219 301 0.1609 0.2039 REMARK 3 9 1.7886 - 1.7198 0.98 7217 297 0.1733 0.2039 REMARK 3 10 1.7198 - 1.6605 0.94 6854 273 0.1956 0.2491 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 0.90 REMARK 3 SHRINKAGE RADIUS : 0.70 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.150 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 15.940 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 12.60 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 17.60 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.012 5387 REMARK 3 ANGLE : 1.494 7369 REMARK 3 CHIRALITY : 0.070 780 REMARK 3 PLANARITY : 0.009 944 REMARK 3 DIHEDRAL : 16.621 1910 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 4 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 3 THROUGH 170 ) REMARK 3 ORIGIN FOR THE GROUP (A): 178.6951 -4.1648 45.2980 REMARK 3 T TENSOR REMARK 3 T11: 0.0907 T22: 0.0687 REMARK 3 T33: 0.0500 T12: -0.0171 REMARK 3 T13: -0.0004 T23: 0.0192 REMARK 3 L TENSOR REMARK 3 L11: 2.0912 L22: 0.6682 REMARK 3 L33: 1.0128 L12: -0.3044 REMARK 3 L13: 0.0916 L23: 0.1459 REMARK 3 S TENSOR REMARK 3 S11: 0.0824 S12: -0.3182 S13: -0.0318 REMARK 3 S21: -0.0200 S22: 0.0029 S23: 0.0519 REMARK 3 S31: -0.0120 S32: 0.0088 S33: -0.0566 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 171 THROUGH 328 ) REMARK 3 ORIGIN FOR THE GROUP (A): 168.5050 -1.8338 37.6043 REMARK 3 T TENSOR REMARK 3 T11: 0.0671 T22: 0.0445 REMARK 3 T33: 0.0787 T12: -0.0244 REMARK 3 T13: -0.0160 T23: -0.0025 REMARK 3 L TENSOR REMARK 3 L11: 2.0478 L22: 1.0416 REMARK 3 L33: 0.7418 L12: -0.8589 REMARK 3 L13: 0.1491 L23: -0.2851 REMARK 3 S TENSOR REMARK 3 S11: 0.0488 S12: -0.0023 S13: -0.0750 REMARK 3 S21: 0.0216 S22: -0.0344 S23: 0.0624 REMARK 3 S31: 0.0400 S32: -0.0786 S33: -0.0154 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 3 THROUGH 62 ) REMARK 3 ORIGIN FOR THE GROUP (A): 198.0600 5.8319 13.0900 REMARK 3 T TENSOR REMARK 3 T11: 0.1018 T22: 0.0373 REMARK 3 T33: 0.0726 T12: -0.0156 REMARK 3 T13: -0.0089 T23: 0.0178 REMARK 3 L TENSOR REMARK 3 L11: 2.3824 L22: 1.5649 REMARK 3 L33: 1.8460 L12: -0.2968 REMARK 3 L13: -0.2524 L23: -0.1680 REMARK 3 S TENSOR REMARK 3 S11: -0.0442 S12: 0.0446 S13: 0.2091 REMARK 3 S21: 0.1511 S22: 0.0275 S23: -0.1335 REMARK 3 S31: -0.3012 S32: 0.1698 S33: 0.0379 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 63 THROUGH 330 ) REMARK 3 ORIGIN FOR THE GROUP (A): 203.7848 -1.1214 16.1201 REMARK 3 T TENSOR REMARK 3 T11: 0.0764 T22: 0.0233 REMARK 3 T33: 0.0482 T12: 0.0073 REMARK 3 T13: 0.0023 T23: -0.0208 REMARK 3 L TENSOR REMARK 3 L11: 1.2398 L22: 0.4811 REMARK 3 L33: 0.8227 L12: -0.1525 REMARK 3 L13: 0.1411 L23: -0.3277 REMARK 3 S TENSOR REMARK 3 S11: -0.0063 S12: 0.0025 S13: -0.0023 REMARK 3 S21: 0.0227 S22: 0.0149 S23: -0.0118 REMARK 3 S31: -0.0598 S32: 0.0181 S33: -0.0106 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4ZCD COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 16-APR-15. REMARK 100 THE DEPOSITION ID IS D_1000209024. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 21-MAR-15 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 4.6 REMARK 200 NUMBER OF CRYSTALS USED : NULL REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 21-ID-D REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97895 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 300 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 2.3.10 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 2.3.10 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 76829 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.660 REMARK 200 RESOLUTION RANGE LOW (A) : 33.200 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 200 DATA REDUNDANCY : 3.700 REMARK 200 R MERGE (I) : 0.04400 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 26.3000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.66 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.69 REMARK 200 COMPLETENESS FOR SHELL (%) : 94.0 REMARK 200 DATA REDUNDANCY IN SHELL : 3.60 REMARK 200 R MERGE FOR SHELL (I) : 0.33600 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 3.700 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER 2.5.7 REMARK 200 STARTING MODEL: 3KKJ REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 44.31 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.21 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 2.0 M SODIUM FORMATE, 100 MM SODIUM REMARK 280 ACETATE, PH 4.6, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 72.35000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 18.80000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 72.35000 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 18.80000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2, 3 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 3 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH B 840 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 THR A 2 REMARK 465 ASP A 223 REMARK 465 ASP A 224 REMARK 465 THR A 225 REMARK 465 LEU A 329 REMARK 465 GLU A 330 REMARK 465 HIS A 331 REMARK 465 HIS A 332 REMARK 465 HIS A 333 REMARK 465 HIS A 334 REMARK 465 HIS A 335 REMARK 465 HIS A 336 REMARK 465 MET B 1 REMARK 465 THR B 2 REMARK 465 HIS B 331 REMARK 465 HIS B 332 REMARK 465 HIS B 333 REMARK 465 HIS B 334 REMARK 465 HIS B 335 REMARK 465 HIS B 336 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 H ARG B 308 O HOH B 501 1.05 REMARK 500 HH11 ARG B 127 O HOH B 503 1.38 REMARK 500 HG SER B 306 O HOH B 501 1.47 REMARK 500 HH22 ARG B 127 O HOH B 507 1.58 REMARK 500 O HOH A 798 O HOH B 605 1.80 REMARK 500 O HOH A 832 O HOH B 770 1.82 REMARK 500 O HOH A 837 O HOH B 678 1.84 REMARK 500 O HOH A 620 O HOH A 699 1.84 REMARK 500 N ARG B 308 O HOH B 501 1.84 REMARK 500 O HOH B 660 O HOH B 802 1.86 REMARK 500 O HOH B 640 O HOH B 741 1.87 REMARK 500 O HOH B 880 O HOH B 881 1.89 REMARK 500 O HOH B 748 O HOH B 862 1.89 REMARK 500 OD2 ASP A 262 O HOH A 501 1.89 REMARK 500 OD2 ASP A 62 O HOH A 502 1.89 REMARK 500 O HOH B 777 O HOH B 818 1.92 REMARK 500 O ASP B 52 NE2 GLN B 56 1.94 REMARK 500 O HOH A 794 O HOH A 797 1.94 REMARK 500 OD2 ASP A 207 O HOH A 503 1.94 REMARK 500 O HOH A 819 O HOH A 821 1.95 REMARK 500 O HOH B 578 O HOH B 779 1.95 REMARK 500 O HOH A 731 O HOH A 848 1.95 REMARK 500 O HOH A 555 O HOH A 825 1.96 REMARK 500 O HOH A 659 O HOH A 847 1.96 REMARK 500 O HOH A 618 O HOH A 655 1.98 REMARK 500 O HOH A 791 O HOH A 863 1.99 REMARK 500 O HOH A 725 O HOH A 767 2.00 REMARK 500 O HOH B 678 O HOH B 689 2.01 REMARK 500 OG SER A 145 O HOH A 504 2.02 REMARK 500 OE2 GLU B 286 O HOH B 502 2.02 REMARK 500 O HOH A 776 O HOH A 779 2.03 REMARK 500 O HOH B 532 O HOH B 841 2.04 REMARK 500 O HOH B 670 O HOH B 786 2.06 REMARK 500 OE2 GLU A 106 O HOH A 505 2.06 REMARK 500 O HOH A 777 O HOH A 855 2.06 REMARK 500 O HOH A 822 O HOH A 842 2.06 REMARK 500 O HOH A 550 O HOH A 757 2.07 REMARK 500 NH1 ARG B 127 O HOH B 503 2.08 REMARK 500 O HOH B 568 O HOH B 784 2.08 REMARK 500 O HOH A 769 O HOH B 696 2.08 REMARK 500 O HOH A 752 O HOH A 760 2.08 REMARK 500 NH1 ARG A 321 O HOH A 506 2.08 REMARK 500 OD1 ASN B 216 O HOH B 504 2.12 REMARK 500 O HOH B 872 O HOH B 878 2.12 REMARK 500 O HOH B 789 O HOH B 808 2.14 REMARK 500 O HOH A 814 O HOH A 819 2.14 REMARK 500 O HOH B 513 O HOH B 732 2.15 REMARK 500 O HOH B 793 O HOH B 854 2.16 REMARK 500 O HOH A 640 O HOH A 773 2.16 REMARK 500 O HOH B 863 O HOH B 879 2.18 REMARK 500 REMARK 500 THIS ENTRY HAS 53 CLOSE CONTACTS REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH B 827 O HOH B 857 1545 1.68 REMARK 500 O HOH B 825 O HOH B 842 1565 2.03 REMARK 500 O HOH A 775 O HOH A 847 2856 2.12 REMARK 500 O HOH A 695 O HOH A 756 1565 2.17 REMARK 500 O HOH A 699 O HOH B 726 3455 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 TRP A 276 CB TRP A 276 CG 0.132 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 MET A 265 CG - SD - CE ANGL. DEV. = -10.3 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LEU A 305 -117.02 -135.17 REMARK 500 LEU A 327 93.10 -63.31 REMARK 500 ASP B 223 40.06 -150.68 REMARK 500 LEU B 305 -116.70 -134.33 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue FAD A 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue NAD A 402 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue FMT A 403 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue FMT A 404 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue FAD B 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue FMT B 402 DBREF 4ZCD A 1 328 UNP Q48MT7 Q48MT7_PSE14 1 328 DBREF 4ZCD B 1 328 UNP Q48MT7 Q48MT7_PSE14 1 328 SEQADV 4ZCD SER A 145 UNP Q48MT7 GLY 145 ENGINEERED MUTATION SEQADV 4ZCD LEU A 329 UNP Q48MT7 EXPRESSION TAG SEQADV 4ZCD GLU A 330 UNP Q48MT7 EXPRESSION TAG SEQADV 4ZCD HIS A 331 UNP Q48MT7 EXPRESSION TAG SEQADV 4ZCD HIS A 332 UNP Q48MT7 EXPRESSION TAG SEQADV 4ZCD HIS A 333 UNP Q48MT7 EXPRESSION TAG SEQADV 4ZCD HIS A 334 UNP Q48MT7 EXPRESSION TAG SEQADV 4ZCD HIS A 335 UNP Q48MT7 EXPRESSION TAG SEQADV 4ZCD HIS A 336 UNP Q48MT7 EXPRESSION TAG SEQADV 4ZCD SER B 145 UNP Q48MT7 GLY 145 ENGINEERED MUTATION SEQADV 4ZCD LEU B 329 UNP Q48MT7 EXPRESSION TAG SEQADV 4ZCD GLU B 330 UNP Q48MT7 EXPRESSION TAG SEQADV 4ZCD HIS B 331 UNP Q48MT7 EXPRESSION TAG SEQADV 4ZCD HIS B 332 UNP Q48MT7 EXPRESSION TAG SEQADV 4ZCD HIS B 333 UNP Q48MT7 EXPRESSION TAG SEQADV 4ZCD HIS B 334 UNP Q48MT7 EXPRESSION TAG SEQADV 4ZCD HIS B 335 UNP Q48MT7 EXPRESSION TAG SEQADV 4ZCD HIS B 336 UNP Q48MT7 EXPRESSION TAG SEQRES 1 A 336 MET THR VAL PRO ILE ALA ILE ILE GLY THR GLY ILE ALA SEQRES 2 A 336 GLY LEU SER ALA ALA GLN ALA LEU THR SER ALA GLY HIS SEQRES 3 A 336 GLN VAL HIS LEU PHE ASP LYS SER ARG GLY SER GLY GLY SEQRES 4 A 336 ARG MET SER SER LYS ARG SER ASP ALA GLY SER LEU ASP SEQRES 5 A 336 MET GLY ALA GLN TYR PHE THR ALA ARG ASP ARG ARG PHE SEQRES 6 A 336 ALA THR ALA VAL LYS GLN TRP GLN ALA GLN GLY HIS VAL SEQRES 7 A 336 SER GLU TRP THR PRO LEU LEU TYR ASN PHE HIS GLY GLY SEQRES 8 A 336 ARG LEU SER PRO SER PRO ASP GLU GLN VAL ARG TRP VAL SEQRES 9 A 336 GLY GLU PRO GLY MET SER ALA ILE THR ARG ALA MET ARG SEQRES 10 A 336 GLY ASP LEU PRO VAL SER PHE SER CYS ARG ILE THR ASP SEQRES 11 A 336 VAL PHE ARG GLY GLU GLN HIS TRP ASN LEU LEU ASP ALA SEQRES 12 A 336 GLU SER GLU ASN HIS GLY PRO PHE SER HIS VAL ILE ILE SEQRES 13 A 336 ALA THR PRO ALA PRO GLN ALA THR ALA LEU LEU ALA ALA SEQRES 14 A 336 ALA PRO LYS LEU ALA SER VAL VAL ALA GLY VAL LYS MET SEQRES 15 A 336 ASP PRO THR TRP ALA VAL ALA LEU ALA PHE GLU THR PRO SEQRES 16 A 336 LEU GLN THR PRO MET GLN GLY CYS PHE VAL GLN ASP SER SEQRES 17 A 336 PRO LEU ASP TRP LEU ALA ARG ASN ARG SER LYS PRO GLY SEQRES 18 A 336 ARG ASP ASP THR LEU ASP SER TRP VAL LEU HIS ALA THR SEQRES 19 A 336 SER GLN TRP SER ARG GLN ASN LEU ASP ALA SER ARG GLU SEQRES 20 A 336 GLN VAL ILE GLU HIS LEU HIS GLY ALA PHE ALA GLU LEU SEQRES 21 A 336 ILE ASP CYS ALA MET PRO ALA PRO VAL PHE SER LEU ALA SEQRES 22 A 336 HIS ARG TRP LEU TYR ALA ARG PRO ALA GLY SER HIS GLU SEQRES 23 A 336 TRP GLY ALA LEU SER ASP ALA ASP LEU GLY ILE TYR VAL SEQRES 24 A 336 CYS GLY ASP TRP CYS LEU SER GLY ARG VAL GLU GLY ALA SEQRES 25 A 336 TRP LEU SER GLY GLN GLU ALA ALA ARG ARG LEU LEU GLU SEQRES 26 A 336 HIS LEU GLN LEU GLU HIS HIS HIS HIS HIS HIS SEQRES 1 B 336 MET THR VAL PRO ILE ALA ILE ILE GLY THR GLY ILE ALA SEQRES 2 B 336 GLY LEU SER ALA ALA GLN ALA LEU THR SER ALA GLY HIS SEQRES 3 B 336 GLN VAL HIS LEU PHE ASP LYS SER ARG GLY SER GLY GLY SEQRES 4 B 336 ARG MET SER SER LYS ARG SER ASP ALA GLY SER LEU ASP SEQRES 5 B 336 MET GLY ALA GLN TYR PHE THR ALA ARG ASP ARG ARG PHE SEQRES 6 B 336 ALA THR ALA VAL LYS GLN TRP GLN ALA GLN GLY HIS VAL SEQRES 7 B 336 SER GLU TRP THR PRO LEU LEU TYR ASN PHE HIS GLY GLY SEQRES 8 B 336 ARG LEU SER PRO SER PRO ASP GLU GLN VAL ARG TRP VAL SEQRES 9 B 336 GLY GLU PRO GLY MET SER ALA ILE THR ARG ALA MET ARG SEQRES 10 B 336 GLY ASP LEU PRO VAL SER PHE SER CYS ARG ILE THR ASP SEQRES 11 B 336 VAL PHE ARG GLY GLU GLN HIS TRP ASN LEU LEU ASP ALA SEQRES 12 B 336 GLU SER GLU ASN HIS GLY PRO PHE SER HIS VAL ILE ILE SEQRES 13 B 336 ALA THR PRO ALA PRO GLN ALA THR ALA LEU LEU ALA ALA SEQRES 14 B 336 ALA PRO LYS LEU ALA SER VAL VAL ALA GLY VAL LYS MET SEQRES 15 B 336 ASP PRO THR TRP ALA VAL ALA LEU ALA PHE GLU THR PRO SEQRES 16 B 336 LEU GLN THR PRO MET GLN GLY CYS PHE VAL GLN ASP SER SEQRES 17 B 336 PRO LEU ASP TRP LEU ALA ARG ASN ARG SER LYS PRO GLY SEQRES 18 B 336 ARG ASP ASP THR LEU ASP SER TRP VAL LEU HIS ALA THR SEQRES 19 B 336 SER GLN TRP SER ARG GLN ASN LEU ASP ALA SER ARG GLU SEQRES 20 B 336 GLN VAL ILE GLU HIS LEU HIS GLY ALA PHE ALA GLU LEU SEQRES 21 B 336 ILE ASP CYS ALA MET PRO ALA PRO VAL PHE SER LEU ALA SEQRES 22 B 336 HIS ARG TRP LEU TYR ALA ARG PRO ALA GLY SER HIS GLU SEQRES 23 B 336 TRP GLY ALA LEU SER ASP ALA ASP LEU GLY ILE TYR VAL SEQRES 24 B 336 CYS GLY ASP TRP CYS LEU SER GLY ARG VAL GLU GLY ALA SEQRES 25 B 336 TRP LEU SER GLY GLN GLU ALA ALA ARG ARG LEU LEU GLU SEQRES 26 B 336 HIS LEU GLN LEU GLU HIS HIS HIS HIS HIS HIS HET FAD A 401 84 HET NAD A 402 70 HET FMT A 403 3 HET FMT A 404 3 HET FAD B 401 84 HET FMT B 402 3 HETNAM FAD FLAVIN-ADENINE DINUCLEOTIDE HETNAM NAD NICOTINAMIDE-ADENINE-DINUCLEOTIDE HETNAM FMT FORMIC ACID FORMUL 3 FAD 2(C27 H33 N9 O15 P2) FORMUL 4 NAD C21 H27 N7 O14 P2 FORMUL 5 FMT 3(C H2 O2) FORMUL 9 HOH *748(H2 O) HELIX 1 AA1 GLY A 11 ALA A 24 1 14 HELIX 2 AA2 GLY A 38 SER A 42 5 5 HELIX 3 AA3 ASP A 62 GLN A 75 1 14 HELIX 4 AA4 SER A 110 GLY A 118 1 9 HELIX 5 AA5 PRO A 159 THR A 164 1 6 HELIX 6 AA6 ALA A 165 LEU A 167 5 3 HELIX 7 AA7 ALA A 170 GLY A 179 1 10 HELIX 8 AA8 ARG A 217 LYS A 219 5 3 HELIX 9 AA9 THR A 234 ASN A 241 1 8 HELIX 10 AB1 SER A 245 ILE A 261 1 17 HELIX 11 AB2 GLY A 301 LEU A 305 5 5 HELIX 12 AB3 ARG A 308 LEU A 327 1 20 HELIX 13 AB4 GLY B 11 ALA B 24 1 14 HELIX 14 AB5 GLY B 38 SER B 42 5 5 HELIX 15 AB6 ASP B 62 GLN B 75 1 14 HELIX 16 AB7 SER B 110 GLY B 118 1 9 HELIX 17 AB8 PRO B 159 THR B 164 1 6 HELIX 18 AB9 ALA B 165 LEU B 167 5 3 HELIX 19 AC1 ALA B 170 GLY B 179 1 10 HELIX 20 AC2 ARG B 217 LYS B 219 5 3 HELIX 21 AC3 THR B 234 ASN B 241 1 8 HELIX 22 AC4 SER B 245 ILE B 261 1 17 HELIX 23 AC5 GLY B 301 LEU B 305 5 5 HELIX 24 AC6 ARG B 308 GLU B 330 1 23 SHEET 1 AA1 6 VAL A 122 SER A 123 0 SHEET 2 AA1 6 VAL A 28 PHE A 31 1 N LEU A 30 O SER A 123 SHEET 3 AA1 6 ILE A 5 ILE A 8 1 N ILE A 7 O HIS A 29 SHEET 4 AA1 6 VAL A 154 ILE A 156 1 O ILE A 155 N ILE A 8 SHEET 5 AA1 6 ILE A 297 VAL A 299 1 O TYR A 298 N ILE A 156 SHEET 6 AA1 6 LEU A 290 ASP A 292 -1 N LEU A 290 O VAL A 299 SHEET 1 AA2 2 VAL A 78 TRP A 81 0 SHEET 2 AA2 2 ARG A 102 GLY A 105 -1 O ARG A 102 N TRP A 81 SHEET 1 AA3 7 ARG A 92 PRO A 95 0 SHEET 2 AA3 7 LEU A 85 HIS A 89 -1 N ASN A 87 O SER A 94 SHEET 3 AA3 7 GLY A 202 VAL A 205 1 O PHE A 204 N TYR A 86 SHEET 4 AA3 7 LEU A 210 ARG A 215 -1 O LEU A 213 N CYS A 203 SHEET 5 AA3 7 ASP A 227 ALA A 233 -1 O HIS A 232 N TRP A 212 SHEET 6 AA3 7 MET A 182 PHE A 192 -1 N VAL A 188 O LEU A 231 SHEET 7 AA3 7 PHE A 270 PRO A 281 -1 O ARG A 280 N ASP A 183 SHEET 1 AA4 3 ILE A 128 ARG A 133 0 SHEET 2 AA4 3 TRP A 138 ASP A 142 -1 O LEU A 141 N THR A 129 SHEET 3 AA4 3 ASN A 147 PHE A 151 -1 O PHE A 151 N TRP A 138 SHEET 1 AA5 6 VAL B 122 SER B 123 0 SHEET 2 AA5 6 VAL B 28 PHE B 31 1 N LEU B 30 O SER B 123 SHEET 3 AA5 6 ILE B 5 ILE B 8 1 N ILE B 7 O HIS B 29 SHEET 4 AA5 6 VAL B 154 ILE B 156 1 O ILE B 155 N ALA B 6 SHEET 5 AA5 6 ILE B 297 VAL B 299 1 O TYR B 298 N ILE B 156 SHEET 6 AA5 6 LEU B 290 ASP B 292 -1 N LEU B 290 O VAL B 299 SHEET 1 AA6 2 VAL B 78 TRP B 81 0 SHEET 2 AA6 2 ARG B 102 GLY B 105 -1 O ARG B 102 N TRP B 81 SHEET 1 AA7 7 ARG B 92 PRO B 95 0 SHEET 2 AA7 7 LEU B 85 HIS B 89 -1 N ASN B 87 O SER B 94 SHEET 3 AA7 7 GLY B 202 VAL B 205 1 O PHE B 204 N PHE B 88 SHEET 4 AA7 7 LEU B 210 ARG B 215 -1 O LEU B 213 N CYS B 203 SHEET 5 AA7 7 ASP B 227 ALA B 233 -1 O HIS B 232 N TRP B 212 SHEET 6 AA7 7 MET B 182 PHE B 192 -1 N VAL B 188 O LEU B 231 SHEET 7 AA7 7 PHE B 270 PRO B 281 -1 O ARG B 280 N ASP B 183 SHEET 1 AA8 3 ILE B 128 ARG B 133 0 SHEET 2 AA8 3 TRP B 138 ASP B 142 -1 O LEU B 141 N THR B 129 SHEET 3 AA8 3 ASN B 147 PHE B 151 -1 O PHE B 151 N TRP B 138 CISPEP 1 GLU A 106 PRO A 107 0 4.88 CISPEP 2 GLY A 149 PRO A 150 0 3.06 CISPEP 3 GLU B 106 PRO B 107 0 5.99 CISPEP 4 GLY B 149 PRO B 150 0 3.35 SITE 1 AC1 38 ILE A 8 GLY A 9 GLY A 11 ILE A 12 SITE 2 AC1 38 ALA A 13 ASP A 32 LYS A 33 SER A 34 SITE 3 AC1 38 GLY A 39 ARG A 40 MET A 41 GLY A 54 SITE 4 AC1 38 ALA A 55 GLN A 56 TYR A 57 CYS A 126 SITE 5 AC1 38 ILE A 128 ALA A 157 THR A 158 PRO A 159 SITE 6 AC1 38 GLN A 162 HIS A 232 TRP A 276 ALA A 279 SITE 7 AC1 38 GLY A 301 ASP A 302 ARG A 308 VAL A 309 SITE 8 AC1 38 ALA A 312 NAD A 402 HOH A 548 HOH A 554 SITE 9 AC1 38 HOH A 567 HOH A 570 HOH A 588 HOH A 608 SITE 10 AC1 38 HOH A 623 HOH A 693 SITE 1 AC2 20 TYR A 57 THR A 59 ARG A 61 ASN A 87 SITE 2 AC2 20 SER A 96 ASP A 98 ARG A 102 THR A 185 SITE 3 AC2 20 PHE A 204 ARG A 280 GLY A 307 ARG A 308 SITE 4 AC2 20 FAD A 401 HOH A 531 HOH A 532 HOH A 541 SITE 5 AC2 20 HOH A 542 HOH A 554 HOH A 580 HOH A 607 SITE 1 AC3 7 SER A 37 GLY A 38 SER A 110 THR A 113 SITE 2 AC3 7 ARG A 114 HOH A 583 HOH A 669 SITE 1 AC4 5 GLY A 134 GLU A 135 GLN A 136 HIS A 137 SITE 2 AC4 5 ASP B 243 SITE 1 AC5 39 GLY B 9 GLY B 11 ILE B 12 ALA B 13 SITE 2 AC5 39 ASP B 32 LYS B 33 SER B 34 GLY B 39 SITE 3 AC5 39 ARG B 40 MET B 41 GLY B 54 ALA B 55 SITE 4 AC5 39 TYR B 57 PHE B 58 CYS B 126 ILE B 128 SITE 5 AC5 39 ALA B 157 THR B 158 PRO B 159 GLN B 162 SITE 6 AC5 39 TRP B 276 ALA B 279 GLY B 301 ASP B 302 SITE 7 AC5 39 GLY B 307 ARG B 308 VAL B 309 ALA B 312 SITE 8 AC5 39 HOH B 540 HOH B 546 HOH B 553 HOH B 569 SITE 9 AC5 39 HOH B 599 HOH B 603 HOH B 609 HOH B 618 SITE 10 AC5 39 HOH B 647 HOH B 659 HOH B 693 SITE 1 AC6 7 TRP B 276 LEU B 277 TYR B 278 HOH B 505 SITE 2 AC6 7 HOH B 521 HOH B 623 HOH B 716 CRYST1 144.700 37.600 138.200 90.00 120.00 90.00 C 1 2 1 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.006911 0.000000 0.003990 0.00000 SCALE2 0.000000 0.026596 0.000000 0.00000 SCALE3 0.000000 0.000000 0.008355 0.00000