HEADER TRANSFERASE 16-APR-15 4ZCR TITLE CRYSTAL STRUCTURE OF THE C-TERMINAL CATALYTIC DOMAIN OF PLASMODIUM TITLE 2 FALCIPARUM CTP:PHOSPHOCHOLINE CYTIDYLYLTRANSFERASE IN COMPLEX WITH TITLE 3 PHOSPHOCHOLINE COMPND MOL_ID: 1; COMPND 2 MOLECULE: CHOLINEPHOSPHATE CYTIDYLYLTRANSFERASE; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: UNP RESIDUES 581-775; COMPND 5 EC: 2.7.7.15; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: PLASMODIUM FALCIPARUM; SOURCE 3 ORGANISM_TAXID: 36329; SOURCE 4 STRAIN: ISOLATE 3D7; SOURCE 5 GENE: CTP, MAL13P1.86; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS ENZYME, MALARIA, CYTIDYLYLTRANSFERASE, PHOSPHATIDYLCHOLINE, KEYWDS 2 TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR E.GUCA,F.HOH,J.-F.GUICHOU,R.CERDAN REVDAT 5 10-JAN-24 4ZCR 1 REMARK REVDAT 4 29-AUG-18 4ZCR 1 JRNL REVDAT 3 08-FEB-17 4ZCR 1 REMARK REVDAT 2 19-OCT-16 4ZCR 1 REMARK REVDAT 1 14-SEP-16 4ZCR 0 JRNL AUTH E.GUCA,G.N.NAGY,F.HAJDU,L.MARTON,R.IZRAEL,F.HOH,Y.YANG, JRNL AUTH 2 H.VIAL,B.G.VERTESSY,J.F.GUICHOU,R.CERDAN JRNL TITL STRUCTURAL DETERMINANTS OF THE CATALYTIC MECHANISM OF JRNL TITL 2 PLASMODIUM CCT, A KEY ENZYME OF MALARIA LIPID BIOSYNTHESIS. JRNL REF SCI REP V. 8 11215 2018 JRNL REFN ESSN 2045-2322 JRNL PMID 30046154 JRNL DOI 10.1038/S41598-018-29500-9 REMARK 2 REMARK 2 RESOLUTION. 1.80 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0103 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.80 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 46.51 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.6 REMARK 3 NUMBER OF REFLECTIONS : 18719 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.179 REMARK 3 R VALUE (WORKING SET) : 0.176 REMARK 3 FREE R VALUE : 0.232 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.700 REMARK 3 FREE R VALUE TEST SET COUNT : 927 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.80 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.85 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1325 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 98.45 REMARK 3 BIN R VALUE (WORKING SET) : 0.2900 REMARK 3 BIN FREE R VALUE SET COUNT : 68 REMARK 3 BIN FREE R VALUE : 0.3150 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1040 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 11 REMARK 3 SOLVENT ATOMS : 91 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 47.20 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.09000 REMARK 3 B22 (A**2) : 0.07000 REMARK 3 B33 (A**2) : 0.02000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.120 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.106 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.080 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 5.966 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.968 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.949 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 1082 ; 0.009 ; 0.020 REMARK 3 BOND LENGTHS OTHERS (A): 1069 ; 0.003 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 1467 ; 1.218 ; 1.963 REMARK 3 BOND ANGLES OTHERS (DEGREES): 2461 ; 1.076 ; 3.004 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 130 ; 6.774 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 47 ;32.703 ;24.468 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 203 ;12.612 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 5 ;21.918 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 172 ; 0.069 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 1160 ; 0.004 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 233 ; 0.002 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 514 ; 3.602 ; 4.435 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 513 ; 3.606 ; 4.428 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 640 ; 3.760 ; 6.629 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 641 ; 3.757 ; 6.639 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 567 ; 3.178 ; 4.861 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 568 ; 3.175 ; 4.863 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 826 ; 3.859 ; 7.132 REMARK 3 LONG RANGE B REFINED ATOMS (A**2): 1254 ; 4.354 ;36.596 REMARK 3 LONG RANGE B OTHER ATOMS (A**2): 1255 ; 4.352 ;36.614 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): 2149 ; 1.992 ; 3.000 REMARK 3 SPHERICITY; FREE ATOMS (A**2): 33 ;26.232 ; 5.000 REMARK 3 SPHERICITY; BONDED ATOMS (A**2): 2190 ; 9.456 ; 5.000 REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 4ZCR COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 16-APR-15. REMARK 100 THE DEPOSITION ID IS D_1000208909. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 14-MAR-15 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.0 REMARK 200 NUMBER OF CRYSTALS USED : NULL REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : ID23-1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.972957 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M-F REMARK 200 INTENSITY-INTEGRATION SOFTWARE : NULL REMARK 200 DATA SCALING SOFTWARE : XDS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 18719 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.800 REMARK 200 RESOLUTION RANGE LOW (A) : 46.510 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.6 REMARK 200 DATA REDUNDANCY : 6.400 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.05400 REMARK 200 FOR THE DATA SET : 14.3000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 4ZCT REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 50.66 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.49 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 20% PEG 4K, PH 8.0, VAPOR DIFFUSION, REMARK 280 HANGING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: I 2 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X,Y,-Z REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z+1/2 REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 25.31000 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 34.78500 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 58.93000 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 25.31000 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 34.78500 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 58.93000 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 25.31000 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 34.78500 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 58.93000 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 25.31000 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 34.78500 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 58.93000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2950 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 13600 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: 5.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 50.62000 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 -69.57000 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 578 REMARK 465 HIS A 579 REMARK 465 MET A 580 REMARK 465 ALA A 581 REMARK 465 VAL A 582 REMARK 465 PRO A 583 REMARK 465 ASP A 584 REMARK 465 ASP A 585 REMARK 465 ASP A 586 REMARK 465 ASP A 587 REMARK 465 ASP A 588 REMARK 465 ASP A 589 REMARK 465 ASP A 590 REMARK 465 ASN A 591 REMARK 465 SER A 592 REMARK 465 ASN A 593 REMARK 465 ASP A 594 REMARK 465 GLU A 595 REMARK 465 SER A 596 REMARK 465 GLU A 597 REMARK 465 TYR A 598 REMARK 465 GLU A 599 REMARK 465 SER A 600 REMARK 465 SER A 601 REMARK 465 GLN A 602 REMARK 465 MET A 603 REMARK 465 ASP A 604 REMARK 465 SER A 605 REMARK 465 GLU A 606 REMARK 465 LYS A 607 REMARK 465 ASN A 608 REMARK 465 LYS A 609 REMARK 465 GLY A 610 REMARK 465 SER A 611 REMARK 465 ILE A 612 REMARK 465 LYS A 613 REMARK 465 ASN A 614 REMARK 465 SER A 615 REMARK 465 ILE A 730 REMARK 465 PRO A 731 REMARK 465 TYR A 732 REMARK 465 ALA A 733 REMARK 465 ASN A 734 REMARK 465 ASN A 735 REMARK 465 GLN A 736 REMARK 465 LYS A 737 REMARK 465 GLU A 738 REMARK 465 ASN A 771 REMARK 465 TYR A 772 REMARK 465 GLU A 773 REMARK 465 ASP A 774 REMARK 465 TYR A 775 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLU A 645 CD OE1 OE2 REMARK 470 GLN A 665 CG CD OE1 NE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 MET A 628 68.13 39.98 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 LEU A 769 LYS A 770 140.28 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 991 DISTANCE = 6.64 ANGSTROMS REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PC A 801 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4ZCP RELATED DB: PDB REMARK 900 4ZCP CONTAINS THE SAME PROTEIN COMPLEXED WITH CMP. REMARK 900 RELATED ID: 4ZCQ RELATED DB: PDB REMARK 900 4ZCQ CONTAINS THE SAME PROTEIN COMPLEXED WITH CHOLINE. DBREF 4ZCR A 581 775 UNP Q8IEE9 Q8IEE9_PLAF7 581 775 SEQADV 4ZCR GLY A 578 UNP Q8IEE9 EXPRESSION TAG SEQADV 4ZCR HIS A 579 UNP Q8IEE9 EXPRESSION TAG SEQADV 4ZCR MET A 580 UNP Q8IEE9 EXPRESSION TAG SEQADV 4ZCR A UNP Q8IEE9 LYS 720 DELETION SEQADV 4ZCR A UNP Q8IEE9 LYS 721 DELETION SEQADV 4ZCR A UNP Q8IEE9 LYS 722 DELETION SEQADV 4ZCR A UNP Q8IEE9 LYS 723 DELETION SEQADV 4ZCR A UNP Q8IEE9 LYS 724 DELETION SEQADV 4ZCR A UNP Q8IEE9 LYS 725 DELETION SEQADV 4ZCR A UNP Q8IEE9 SER 726 DELETION SEQADV 4ZCR A UNP Q8IEE9 LYS 727 DELETION SEQADV 4ZCR A UNP Q8IEE9 GLY 728 DELETION SEQADV 4ZCR A UNP Q8IEE9 LYS 729 DELETION SEQADV 4ZCR A UNP Q8IEE9 SER 730 DELETION SEQADV 4ZCR A UNP Q8IEE9 PHE 731 DELETION SEQADV 4ZCR A UNP Q8IEE9 SER 732 DELETION SEQADV 4ZCR A UNP Q8IEE9 PHE 733 DELETION SEQADV 4ZCR A UNP Q8IEE9 ASP 734 DELETION SEQADV 4ZCR A UNP Q8IEE9 GLU 735 DELETION SEQADV 4ZCR A UNP Q8IEE9 GLU 736 DELETION SEQADV 4ZCR A UNP Q8IEE9 ASN 737 DELETION SEQRES 1 A 180 GLY HIS MET ALA VAL PRO ASP ASP ASP ASP ASP ASP ASP SEQRES 2 A 180 ASN SER ASN ASP GLU SER GLU TYR GLU SER SER GLN MET SEQRES 3 A 180 ASP SER GLU LYS ASN LYS GLY SER ILE LYS ASN SER LYS SEQRES 4 A 180 ASN VAL VAL ILE TYR ALA ASP GLY VAL TYR ASP MET LEU SEQRES 5 A 180 HIS LEU GLY HIS MET LYS GLN LEU GLU GLN ALA LYS LYS SEQRES 6 A 180 LEU PHE GLU ASN THR THR LEU ILE VAL GLY VAL THR SER SEQRES 7 A 180 ASP ASN GLU THR LYS LEU PHE LYS GLY GLN VAL VAL GLN SEQRES 8 A 180 THR LEU GLU GLU ARG THR GLU THR LEU LYS HIS ILE ARG SEQRES 9 A 180 TRP VAL ASP GLU ILE ILE SER PRO CYS PRO TRP VAL VAL SEQRES 10 A 180 THR PRO GLU PHE LEU GLU LYS TYR LYS ILE ASP TYR VAL SEQRES 11 A 180 ALA HIS ASP ASP ILE PRO TYR ALA ASN ASN GLN LYS GLU SEQRES 12 A 180 ASP ILE TYR ALA TRP LEU LYS ARG ALA GLY LYS PHE LYS SEQRES 13 A 180 ALA THR GLN ARG THR GLU GLY VAL SER THR THR ASP LEU SEQRES 14 A 180 ILE VAL ARG ILE LEU LYS ASN TYR GLU ASP TYR HET PC A 801 11 HETNAM PC PHOSPHOCHOLINE FORMUL 2 PC C5 H15 N O4 P 1+ FORMUL 3 HOH *91(H2 O) HELIX 1 AA1 HIS A 630 LYS A 642 1 13 HELIX 2 AA2 SER A 655 LYS A 663 1 9 HELIX 3 AA3 THR A 669 HIS A 679 1 11 HELIX 4 AA4 THR A 695 LYS A 703 1 9 HELIX 5 AA5 TYR A 741 GLY A 748 1 8 HELIX 6 AA6 SER A 760 LEU A 769 1 10 SHEET 1 AA1 5 GLU A 685 CYS A 690 0 SHEET 2 AA1 5 THR A 647 THR A 654 1 N VAL A 651 O GLU A 685 SHEET 3 AA1 5 VAL A 618 GLY A 624 1 N ILE A 620 O ILE A 650 SHEET 4 AA1 5 TYR A 706 HIS A 709 1 O ALA A 708 N TYR A 621 SHEET 5 AA1 5 PHE A 750 ALA A 752 1 O LYS A 751 N VAL A 707 CISPEP 1 SER A 688 PRO A 689 0 -4.24 SITE 1 AC1 9 ASP A 623 GLY A 624 VAL A 625 THR A 654 SITE 2 AC1 9 LYS A 663 TRP A 692 HIS A 709 TYR A 741 SITE 3 AC1 9 HOH A 950 CRYST1 50.620 69.570 117.860 90.00 90.00 90.00 I 2 2 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.019755 0.000000 0.000000 0.00000 SCALE2 0.000000 0.014374 0.000000 0.00000 SCALE3 0.000000 0.000000 0.008485 0.00000