HEADER HYDROLASE 16-APR-15 4ZD4 TITLE CATALYTIC DOMAIN OF SST2 F403W MUTANT COMPND MOL_ID: 1; COMPND 2 MOLECULE: AMSH-LIKE PROTEASE SST2; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: UNP RESIDUES 245-435; COMPND 5 SYNONYM: SUPPRESSOR OF STE12 DELETION PROTEIN 2; COMPND 6 EC: 3.4.19.-; COMPND 7 ENGINEERED: YES; COMPND 8 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SCHIZOSACCHAROMYCES POMBE; SOURCE 3 ORGANISM_COMMON: FISSION YEAST; SOURCE 4 ORGANISM_TAXID: 284812; SOURCE 5 STRAIN: 972 / ATCC 24843; SOURCE 6 GENE: SST2, SPAC19B12.10; SOURCE 7 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 8 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 9 EXPRESSION_SYSTEM_STRAIN: ROSETTA; SOURCE 10 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 11 EXPRESSION_SYSTEM_PLASMID: PGEX-6-P1 KEYWDS HELIX-BETA-HELIX SANDWICH ZINC METALLOPROTEASE ENDOSOME UBIQUITIN, KEYWDS 2 HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR A.N.BUENO REVDAT 5 27-SEP-23 4ZD4 1 LINK REVDAT 4 04-DEC-19 4ZD4 1 REMARK REVDAT 3 20-SEP-17 4ZD4 1 REMARK REVDAT 2 23-AUG-17 4ZD4 1 REMARK REVDAT 1 14-OCT-15 4ZD4 0 JRNL AUTH A.N.BUENO JRNL TITL STRUCTURE OF THE CATALYTIC DOMAIN OF SST2 F403W MUTANT AT JRNL TITL 2 1.63 ANGSTROMS RESOLUTION JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.63 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.9_1692 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.63 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 24.17 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.350 REMARK 3 COMPLETENESS FOR RANGE (%) : 97.3 REMARK 3 NUMBER OF REFLECTIONS : 60880 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.185 REMARK 3 R VALUE (WORKING SET) : 0.184 REMARK 3 FREE R VALUE : 0.209 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.060 REMARK 3 FREE R VALUE TEST SET COUNT : 3083 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 24.1763 - 4.5695 0.98 2731 148 0.1509 0.1615 REMARK 3 2 4.5695 - 3.6309 0.99 2723 141 0.1497 0.1772 REMARK 3 3 3.6309 - 3.1731 0.99 2700 139 0.1847 0.2059 REMARK 3 4 3.1731 - 2.8835 0.99 2700 132 0.1994 0.2145 REMARK 3 5 2.8835 - 2.6771 0.99 2663 161 0.1963 0.2288 REMARK 3 6 2.6771 - 2.5194 0.98 2629 161 0.1976 0.2352 REMARK 3 7 2.5194 - 2.3934 0.98 2665 129 0.1973 0.2192 REMARK 3 8 2.3934 - 2.2893 0.98 2661 143 0.1910 0.2158 REMARK 3 9 2.2893 - 2.2012 0.98 2663 147 0.1877 0.2124 REMARK 3 10 2.2012 - 2.1253 0.98 2608 147 0.1877 0.2184 REMARK 3 11 2.1253 - 2.0589 0.98 2625 143 0.1905 0.2147 REMARK 3 12 2.0589 - 2.0000 0.97 2613 147 0.1914 0.2241 REMARK 3 13 2.0000 - 1.9474 0.98 2643 132 0.1909 0.2144 REMARK 3 14 1.9474 - 1.8999 0.97 2621 156 0.1980 0.2285 REMARK 3 15 1.8999 - 1.8567 0.97 2578 138 0.1984 0.2542 REMARK 3 16 1.8567 - 1.8172 0.97 2649 113 0.1959 0.2354 REMARK 3 17 1.8172 - 1.7809 0.97 2567 155 0.1976 0.2399 REMARK 3 18 1.7809 - 1.7473 0.96 2607 133 0.2130 0.2379 REMARK 3 19 1.7473 - 1.7161 0.97 2622 131 0.2204 0.2449 REMARK 3 20 1.7161 - 1.6870 0.96 2598 115 0.2248 0.2462 REMARK 3 21 1.6870 - 1.6598 0.96 2586 124 0.2403 0.2839 REMARK 3 22 1.6598 - 1.6343 0.89 2345 148 0.2509 0.2834 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.170 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 20.620 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.007 3074 REMARK 3 ANGLE : 1.111 4165 REMARK 3 CHIRALITY : 0.045 488 REMARK 3 PLANARITY : 0.006 520 REMARK 3 DIHEDRAL : 13.926 1140 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4ZD4 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 17-APR-15. REMARK 100 THE DEPOSITION ID IS D_1000208991. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 30-JUN-14 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.0 REMARK 200 NUMBER OF CRYSTALS USED : NULL REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 23-ID-B REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.033 REMARK 200 MONOCHROMATOR : SI 111 CHANNEL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 300 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-3000 REMARK 200 DATA SCALING SOFTWARE : HKL-3000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 60880 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.630 REMARK 200 RESOLUTION RANGE LOW (A) : 59.440 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 97.3 REMARK 200 DATA REDUNDANCY : 3.900 REMARK 200 R MERGE (I) : 0.09500 REMARK 200 R SYM (I) : 0.09500 REMARK 200 FOR THE DATA SET : 18.0100 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.63 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.66 REMARK 200 COMPLETENESS FOR SHELL (%) : 96.2 REMARK 200 DATA REDUNDANCY IN SHELL : 7.70 REMARK 200 R MERGE FOR SHELL (I) : 0.56200 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.520 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: HKL-3000 REMARK 200 STARTING MODEL: 4MS7 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 57.50 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.89 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.2 M AMMONIUM TARTRATE DIBASIC, 20% REMARK 280 W/V PEG 3,350, PH 7.0, VAPOR DIFFUSION, SITTING DROP, REMARK 280 TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 36.84850 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 239 REMARK 465 PRO A 240 REMARK 465 LEU A 241 REMARK 465 GLY A 242 REMARK 465 SER A 243 REMARK 465 MET A 244 REMARK 465 ALA A 245 REMARK 465 GLY A 246 REMARK 465 THR A 247 REMARK 465 PHE A 248 REMARK 465 VAL A 434 REMARK 465 LYS A 435 REMARK 465 GLY B 239 REMARK 465 PRO B 240 REMARK 465 LEU B 241 REMARK 465 GLY B 242 REMARK 465 SER B 243 REMARK 465 MET B 244 REMARK 465 ALA B 245 REMARK 465 GLY B 246 REMARK 465 THR B 247 REMARK 465 PHE B 248 REMARK 465 VAL B 434 REMARK 465 LYS B 435 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 258 CG CD CE NZ REMARK 470 LYS A 282 CG CD CE NZ REMARK 470 GLN A 297 CG CD OE1 NE2 REMARK 470 GLU A 327 CG CD OE1 OE2 REMARK 470 GLU A 407 CG CD OE1 OE2 REMARK 470 ARG B 296 CG CD NE CZ NH1 NH2 REMARK 470 PHE B 326 CG CD1 CD2 CE1 CE2 CZ REMARK 470 GLU B 327 CG CD OE1 OE2 REMARK 470 GLU B 407 CG CD OE1 OE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O1 EDO A 504 O HOH A 601 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 315 18.83 -141.90 REMARK 500 ALA A 374 77.42 -118.99 REMARK 500 CYS B 317 51.09 -154.84 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 507 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 341 NE2 REMARK 620 2 HIS A 343 NE2 105.1 REMARK 620 3 ASP A 354 OD2 104.0 117.4 REMARK 620 4 HOH A 603 O 115.7 100.2 114.5 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 508 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 356 NE2 REMARK 620 2 CYS A 397 SG 119.7 REMARK 620 3 HIS A 404 NE2 108.7 102.0 REMARK 620 4 HIS A 406 NE2 110.7 111.9 102.0 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN B 508 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS B 341 NE2 REMARK 620 2 HIS B 343 NE2 105.9 REMARK 620 3 ASP B 354 OD2 105.8 115.7 REMARK 620 4 HOH B 608 O 112.5 101.8 114.8 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN B 509 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS B 356 NE2 REMARK 620 2 CYS B 397 SG 116.9 REMARK 620 3 HIS B 404 NE2 112.4 101.3 REMARK 620 4 HIS B 406 NE2 111.1 109.3 104.8 REMARK 620 N 1 2 3 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 502 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 503 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 504 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 505 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue TRS A 506 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN A 507 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN A 508 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO B 501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO B 502 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO B 503 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO B 504 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO B 505 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO B 506 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue DTT B 507 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN B 508 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN B 509 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4JXE RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF SCHIZOSACCHAROMYCES POMBE SST2 CATALYTIC DOMAIN REMARK 900 RELATED ID: 4MS7 RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF SCHIZOSACCHAROMYCES POMBE SST2 CATALYTIC DOMAIN REMARK 900 RELATED ID: 4FSJ RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF SCHIZOSACCHAROMYCES POMBE SST2 CATALYTIC DOMAIN REMARK 900 RELATED ID: 3RZU RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF HUMAN AMSH CATALYTIC DOMAIN REMARK 900 RELATED ID: 2ZNR RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF HUMAN AMSH-LP CATALYTIC DOMAIN REMARK 900 RELATED ID: 4ZD5 RELATED DB: PDB DBREF 4ZD4 A 245 435 UNP Q9P371 SST2_SCHPO 245 435 DBREF 4ZD4 B 245 435 UNP Q9P371 SST2_SCHPO 245 435 SEQADV 4ZD4 GLY A 239 UNP Q9P371 EXPRESSION TAG SEQADV 4ZD4 PRO A 240 UNP Q9P371 EXPRESSION TAG SEQADV 4ZD4 LEU A 241 UNP Q9P371 EXPRESSION TAG SEQADV 4ZD4 GLY A 242 UNP Q9P371 EXPRESSION TAG SEQADV 4ZD4 SER A 243 UNP Q9P371 EXPRESSION TAG SEQADV 4ZD4 MET A 244 UNP Q9P371 EXPRESSION TAG SEQADV 4ZD4 TRP A 403 UNP Q9P371 PHE 403 ENGINEERED MUTATION SEQADV 4ZD4 GLY B 239 UNP Q9P371 EXPRESSION TAG SEQADV 4ZD4 PRO B 240 UNP Q9P371 EXPRESSION TAG SEQADV 4ZD4 LEU B 241 UNP Q9P371 EXPRESSION TAG SEQADV 4ZD4 GLY B 242 UNP Q9P371 EXPRESSION TAG SEQADV 4ZD4 SER B 243 UNP Q9P371 EXPRESSION TAG SEQADV 4ZD4 MET B 244 UNP Q9P371 EXPRESSION TAG SEQADV 4ZD4 TRP B 403 UNP Q9P371 PHE 403 ENGINEERED MUTATION SEQRES 1 A 197 GLY PRO LEU GLY SER MET ALA GLY THR PHE LYS ILE HIS SEQRES 2 A 197 ALA TYR THR GLU GLY GLY LYS PRO LEU ARG THR ILE TYR SEQRES 3 A 197 LEU PRO LYS LEU LEU LYS LYS VAL PHE LEU ASP VAL VAL SEQRES 4 A 197 LYS PRO ASN THR LYS LYS ASN LEU GLU THR CYS GLY ILE SEQRES 5 A 197 LEU CYS GLY LYS LEU ARG GLN ASN ALA PHE PHE ILE THR SEQRES 6 A 197 HIS LEU VAL ILE PRO LEU GLN GLU ALA THR SER ASP THR SEQRES 7 A 197 CYS GLY THR THR ASP GLU ALA SER LEU PHE GLU PHE GLN SEQRES 8 A 197 ASP LYS HIS ASN LEU LEU THR LEU GLY TRP ILE HIS THR SEQRES 9 A 197 HIS PRO THR GLN THR CYS PHE MET SER SER VAL ASP LEU SEQRES 10 A 197 HIS THR HIS CYS SER TYR GLN LEU MET LEU PRO GLU ALA SEQRES 11 A 197 ILE ALA ILE VAL MET ALA PRO SER LYS ASN THR SER GLY SEQRES 12 A 197 ILE PHE ARG LEU LEU ASP PRO GLU GLY LEU GLN THR ILE SEQRES 13 A 197 VAL LYS CYS ARG LYS PRO GLY LEU TRP HIS PRO HIS GLU SEQRES 14 A 197 GLY LYS VAL TYR THR MET VAL ALA GLN PRO GLY HIS VAL SEQRES 15 A 197 ARG GLU ILE ASN SER LYS LEU GLN VAL VAL ASP LEU ARG SEQRES 16 A 197 VAL LYS SEQRES 1 B 197 GLY PRO LEU GLY SER MET ALA GLY THR PHE LYS ILE HIS SEQRES 2 B 197 ALA TYR THR GLU GLY GLY LYS PRO LEU ARG THR ILE TYR SEQRES 3 B 197 LEU PRO LYS LEU LEU LYS LYS VAL PHE LEU ASP VAL VAL SEQRES 4 B 197 LYS PRO ASN THR LYS LYS ASN LEU GLU THR CYS GLY ILE SEQRES 5 B 197 LEU CYS GLY LYS LEU ARG GLN ASN ALA PHE PHE ILE THR SEQRES 6 B 197 HIS LEU VAL ILE PRO LEU GLN GLU ALA THR SER ASP THR SEQRES 7 B 197 CYS GLY THR THR ASP GLU ALA SER LEU PHE GLU PHE GLN SEQRES 8 B 197 ASP LYS HIS ASN LEU LEU THR LEU GLY TRP ILE HIS THR SEQRES 9 B 197 HIS PRO THR GLN THR CYS PHE MET SER SER VAL ASP LEU SEQRES 10 B 197 HIS THR HIS CYS SER TYR GLN LEU MET LEU PRO GLU ALA SEQRES 11 B 197 ILE ALA ILE VAL MET ALA PRO SER LYS ASN THR SER GLY SEQRES 12 B 197 ILE PHE ARG LEU LEU ASP PRO GLU GLY LEU GLN THR ILE SEQRES 13 B 197 VAL LYS CYS ARG LYS PRO GLY LEU TRP HIS PRO HIS GLU SEQRES 14 B 197 GLY LYS VAL TYR THR MET VAL ALA GLN PRO GLY HIS VAL SEQRES 15 B 197 ARG GLU ILE ASN SER LYS LEU GLN VAL VAL ASP LEU ARG SEQRES 16 B 197 VAL LYS HET EDO A 501 4 HET EDO A 502 4 HET EDO A 503 4 HET EDO A 504 4 HET EDO A 505 4 HET TRS A 506 8 HET ZN A 507 1 HET ZN A 508 1 HET EDO B 501 4 HET EDO B 502 4 HET EDO B 503 4 HET EDO B 504 4 HET EDO B 505 4 HET EDO B 506 4 HET DTT B 507 8 HET ZN B 508 1 HET ZN B 509 1 HETNAM EDO 1,2-ETHANEDIOL HETNAM TRS 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL HETNAM ZN ZINC ION HETNAM DTT 2,3-DIHYDROXY-1,4-DITHIOBUTANE HETSYN EDO ETHYLENE GLYCOL HETSYN TRS TRIS BUFFER HETSYN DTT 1,4-DITHIOTHREITOL FORMUL 3 EDO 11(C2 H6 O2) FORMUL 8 TRS C4 H12 N O3 1+ FORMUL 9 ZN 4(ZN 2+) FORMUL 17 DTT C4 H10 O2 S2 FORMUL 20 HOH *151(H2 O) HELIX 1 AA1 LEU A 268 LYS A 283 1 16 HELIX 2 AA2 ASP A 321 HIS A 332 1 12 HELIX 3 AA3 SER A 351 LEU A 365 1 15 HELIX 4 AA4 PRO A 375 ASN A 378 5 4 HELIX 5 AA5 PRO A 388 CYS A 397 1 10 HELIX 6 AA6 LEU B 268 LYS B 283 1 16 HELIX 7 AA7 ASP B 321 HIS B 332 1 12 HELIX 8 AA8 SER B 351 LEU B 365 1 15 HELIX 9 AA9 PRO B 375 ASN B 378 5 4 HELIX 10 AB1 PRO B 388 CYS B 397 1 10 SHEET 1 AA1 2 ALA A 252 TYR A 253 0 SHEET 2 AA1 2 PRO A 259 LEU A 260 -1 O LEU A 260 N ALA A 252 SHEET 1 AA2 8 TYR A 411 MET A 413 0 SHEET 2 AA2 8 THR A 379 LEU A 385 -1 N ARG A 384 O THR A 412 SHEET 3 AA2 8 ILE A 369 ALA A 374 -1 N ALA A 374 O THR A 379 SHEET 4 AA2 8 LEU A 335 THR A 342 1 N TRP A 339 O ILE A 371 SHEET 5 AA2 8 CYS A 288 ARG A 296 -1 N LEU A 291 O LEU A 337 SHEET 6 AA2 8 ALA A 299 ILE A 307 -1 O ALA A 299 N ARG A 296 SHEET 7 AA2 8 ILE A 263 PRO A 266 1 N TYR A 264 O PHE A 300 SHEET 8 AA2 8 VAL A 420 ILE A 423 1 O ARG A 421 N LEU A 265 SHEET 1 AA3 7 TYR A 411 MET A 413 0 SHEET 2 AA3 7 THR A 379 LEU A 385 -1 N ARG A 384 O THR A 412 SHEET 3 AA3 7 ILE A 369 ALA A 374 -1 N ALA A 374 O THR A 379 SHEET 4 AA3 7 LEU A 335 THR A 342 1 N TRP A 339 O ILE A 371 SHEET 5 AA3 7 CYS A 288 ARG A 296 -1 N LEU A 291 O LEU A 337 SHEET 6 AA3 7 ALA A 299 ILE A 307 -1 O ALA A 299 N ARG A 296 SHEET 7 AA3 7 GLN A 428 ASP A 431 1 O VAL A 430 N ILE A 307 SHEET 1 AA4 2 GLN A 310 ALA A 312 0 SHEET 2 AA4 2 CYS A 317 THR A 319 -1 O GLY A 318 N GLU A 311 SHEET 1 AA5 2 ALA B 252 TYR B 253 0 SHEET 2 AA5 2 PRO B 259 LEU B 260 -1 O LEU B 260 N ALA B 252 SHEET 1 AA6 8 TYR B 411 MET B 413 0 SHEET 2 AA6 8 THR B 379 LEU B 385 -1 N ARG B 384 O THR B 412 SHEET 3 AA6 8 ILE B 369 ALA B 374 -1 N ALA B 370 O PHE B 383 SHEET 4 AA6 8 LEU B 335 THR B 342 1 N TRP B 339 O ILE B 371 SHEET 5 AA6 8 CYS B 288 ARG B 296 -1 N LEU B 291 O LEU B 337 SHEET 6 AA6 8 ALA B 299 ILE B 307 -1 O VAL B 306 N ILE B 290 SHEET 7 AA6 8 ILE B 263 PRO B 266 1 N TYR B 264 O PHE B 300 SHEET 8 AA6 8 VAL B 420 ILE B 423 1 O ARG B 421 N LEU B 265 SHEET 1 AA7 7 TYR B 411 MET B 413 0 SHEET 2 AA7 7 THR B 379 LEU B 385 -1 N ARG B 384 O THR B 412 SHEET 3 AA7 7 ILE B 369 ALA B 374 -1 N ALA B 370 O PHE B 383 SHEET 4 AA7 7 LEU B 335 THR B 342 1 N TRP B 339 O ILE B 371 SHEET 5 AA7 7 CYS B 288 ARG B 296 -1 N LEU B 291 O LEU B 337 SHEET 6 AA7 7 ALA B 299 ILE B 307 -1 O VAL B 306 N ILE B 290 SHEET 7 AA7 7 GLN B 428 ASP B 431 1 O VAL B 430 N ILE B 307 SSBOND 1 CYS A 288 CYS A 317 1555 1555 2.04 SSBOND 2 CYS B 288 CYS B 317 1555 1555 2.06 LINK NE2 HIS A 341 ZN ZN A 507 1555 1555 2.05 LINK NE2 HIS A 343 ZN ZN A 507 1555 1555 2.00 LINK OD2 ASP A 354 ZN ZN A 507 1555 1555 1.99 LINK NE2 HIS A 356 ZN ZN A 508 1555 1555 2.05 LINK SG CYS A 397 ZN ZN A 508 1555 1555 2.30 LINK NE2 HIS A 404 ZN ZN A 508 1555 1555 2.03 LINK NE2 HIS A 406 ZN ZN A 508 1555 1555 1.91 LINK ZN ZN A 507 O HOH A 603 1555 1555 1.96 LINK NE2 HIS B 341 ZN ZN B 508 1555 1555 2.07 LINK NE2 HIS B 343 ZN ZN B 508 1555 1555 1.99 LINK OD2 ASP B 354 ZN ZN B 508 1555 1555 1.98 LINK NE2 HIS B 356 ZN ZN B 509 1555 1555 2.04 LINK SG CYS B 397 ZN ZN B 509 1555 1555 2.30 LINK NE2 HIS B 404 ZN ZN B 509 1555 1555 2.05 LINK NE2 HIS B 406 ZN ZN B 509 1555 1555 1.88 LINK ZN ZN B 508 O HOH B 608 1555 1555 1.93 CISPEP 1 ASP A 387 PRO A 388 0 9.48 CISPEP 2 GLN A 416 PRO A 417 0 8.53 CISPEP 3 ASP B 387 PRO B 388 0 13.26 CISPEP 4 GLN B 416 PRO B 417 0 5.50 SITE 1 AC1 8 GLU A 286 THR A 316 CYS A 317 TRP A 339 SITE 2 AC1 8 VAL A 353 ASP A 354 THR A 357 HOH A 622 SITE 1 AC2 4 GLY A 318 THR A 319 TYR A 361 EDO A 503 SITE 1 AC3 2 GLU A 322 EDO A 502 SITE 1 AC4 8 ASP A 315 HIS A 343 GLN A 346 PHE A 349 SITE 2 AC4 8 SER A 351 HOH A 601 HOH A 603 HOH A 604 SITE 1 AC5 3 LEU A 335 THR A 336 MET A 364 SITE 1 AC6 3 LYS A 409 THR A 412 MET A 413 SITE 1 AC7 4 HIS A 341 HIS A 343 ASP A 354 HOH A 603 SITE 1 AC8 4 HIS A 356 CYS A 397 HIS A 404 HIS A 406 SITE 1 AC9 4 GLY B 318 THR B 319 TYR B 361 HOH B 654 SITE 1 AD1 4 LEU B 335 THR B 336 MET B 364 HOH B 619 SITE 1 AD2 5 ASP B 315 HIS B 343 GLN B 346 PHE B 349 SITE 2 AD2 5 HOH B 605 SITE 1 AD3 4 LYS B 409 TYR B 411 THR B 412 EDO B 505 SITE 1 AD4 4 LYS B 409 VAL B 410 TYR B 411 EDO B 504 SITE 1 AD5 5 LYS B 258 GLN B 362 LEU B 363 PRO B 366 SITE 2 AD5 5 ASP B 387 SITE 1 AD6 4 LYS B 294 HIS B 304 HIS B 332 GLN B 428 SITE 1 AD7 4 HIS B 341 HIS B 343 ASP B 354 HOH B 608 SITE 1 AD8 4 HIS B 356 CYS B 397 HIS B 404 HIS B 406 CRYST1 58.636 73.697 64.633 90.00 113.15 90.00 P 1 21 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.017054 0.000000 0.007290 0.00000 SCALE2 0.000000 0.013569 0.000000 0.00000 SCALE3 0.000000 0.000000 0.016826 0.00000