HEADER VIRAL PROTEIN 17-APR-15 4ZDG TITLE STRUCTURE OF THE ADENOVIRUS 14P1 KNOB DOMAIN COMPND MOL_ID: 1; COMPND 2 MOLECULE: FIBER PROTEIN; COMPND 3 CHAIN: A, B, C; COMPND 4 FRAGMENT: KNOB DOMAIN, UNP RESIDUES 121-323; COMPND 5 ENGINEERED: YES; COMPND 6 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HUMAN ADENOVIRUS 14P1; SOURCE 3 ORGANISM_TAXID: 814922; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS ADENOVIRUS 14, STRAIN P1, FIBRE KNOB, HEAD DOMAIN, VIRAL PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR P.FENDER,C.DUCOURNAU,C.ZUBIETA REVDAT 4 10-JAN-24 4ZDG 1 REMARK REVDAT 3 20-FEB-19 4ZDG 1 REMARK LINK REVDAT 2 14-OCT-15 4ZDG 1 JRNL REVDAT 1 09-SEP-15 4ZDG 0 JRNL AUTH H.WANG,C.DUCOURNAU,K.SAYDAMINOVA,M.RICHTER,R.YUMUL,M.HO, JRNL AUTH 2 D.CARTER,C.ZUBIETA,P.FENDER,A.LIEBER JRNL TITL INTRACELLULAR SIGNALING AND DESMOGLEIN 2 SHEDDING TRIGGERED JRNL TITL 2 BY HUMAN ADENOVIRUSES AD3, AD14, AND AD14P1. JRNL REF J.VIROL. V. 89 10841 2015 JRNL REFN ESSN 1098-5514 JRNL PMID 26292319 JRNL DOI 10.1128/JVI.01425-15 REMARK 2 REMARK 2 RESOLUTION. 3.20 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : BUSTER 2.10.2 REMARK 3 AUTHORS : BRICOGNE,BLANC,BRANDL,FLENSBURG,KELLER, REMARK 3 : PACIOREK,ROVERSI,SHARFF,SMART,VONRHEIN, REMARK 3 : WOMACK,MATTHEWS,TEN EYCK,TRONRUD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 3.20 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 48.68 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 3 NUMBER OF REFLECTIONS : 9525 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.202 REMARK 3 R VALUE (WORKING SET) : 0.200 REMARK 3 FREE R VALUE : 0.246 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.810 REMARK 3 FREE R VALUE TEST SET COUNT : 458 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 5 REMARK 3 BIN RESOLUTION RANGE HIGH (ANGSTROMS) : 3.20 REMARK 3 BIN RESOLUTION RANGE LOW (ANGSTROMS) : 3.58 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.76 REMARK 3 REFLECTIONS IN BIN (WORKING + TEST SET) : 2651 REMARK 3 BIN R VALUE (WORKING + TEST SET) : 0.2116 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 2501 REMARK 3 BIN R VALUE (WORKING SET) : 0.2071 REMARK 3 BIN FREE R VALUE : 0.2878 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 5.66 REMARK 3 BIN FREE R VALUE TEST SET COUNT : 150 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 4532 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 0 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 79.58 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 82.03 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 2.25110 REMARK 3 B22 (A**2) : 2.25110 REMARK 3 B33 (A**2) : -4.50230 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.532 REMARK 3 DPI (BLOW EQ-10) BASED ON R VALUE (A) : NULL REMARK 3 DPI (BLOW EQ-9) BASED ON FREE R VALUE (A) : 0.531 REMARK 3 DPI (CRUICKSHANK) BASED ON R VALUE (A) : NULL REMARK 3 DPI (CRUICKSHANK) BASED ON FREE R VALUE (A) : NULL REMARK 3 REMARK 3 REFERENCES: BLOW, D. (2002) ACTA CRYST D58, 792-797 REMARK 3 CRUICKSHANK, D.W.J. (1999) ACTA CRYST D55, 583-601 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.907 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.855 REMARK 3 REMARK 3 NUMBER OF GEOMETRIC FUNCTION TERMS DEFINED : 15 REMARK 3 TERM COUNT WEIGHT FUNCTION. REMARK 3 BOND LENGTHS : 4669 ; 2.000 ; HARMONIC REMARK 3 BOND ANGLES : 6393 ; 2.000 ; HARMONIC REMARK 3 TORSION ANGLES : 1524 ; 2.000 ; SINUSOIDAL REMARK 3 TRIGONAL CARBON PLANES : 123 ; 2.000 ; HARMONIC REMARK 3 GENERAL PLANES : 686 ; 5.000 ; HARMONIC REMARK 3 ISOTROPIC THERMAL FACTORS : 4669 ; 20.000 ; HARMONIC REMARK 3 BAD NON-BONDED CONTACTS : NULL ; NULL ; NULL REMARK 3 IMPROPER TORSIONS : NULL ; NULL ; NULL REMARK 3 PSEUDOROTATION ANGLES : NULL ; NULL ; NULL REMARK 3 CHIRAL IMPROPER TORSION : 678 ; 5.000 ; SEMIHARMONIC REMARK 3 SUM OF OCCUPANCIES : NULL ; NULL ; NULL REMARK 3 UTILITY DISTANCES : NULL ; NULL ; NULL REMARK 3 UTILITY ANGLES : NULL ; NULL ; NULL REMARK 3 UTILITY TORSION : NULL ; NULL ; NULL REMARK 3 IDEAL-DIST CONTACT TERM : 5519 ; 4.000 ; SEMIHARMONIC REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.010 REMARK 3 BOND ANGLES (DEGREES) : 1.14 REMARK 3 PEPTIDE OMEGA TORSION ANGLES (DEGREES) : 4.95 REMARK 3 OTHER TORSION ANGLES (DEGREES) : 15.60 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4ZDG COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 17-APR-15. REMARK 100 THE DEPOSITION ID IS D_1000209055. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 25-FEB-15 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 9.0 REMARK 200 NUMBER OF CRYSTALS USED : NULL REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : ID23-2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.873 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 2M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : NULL REMARK 200 RESOLUTION RANGE HIGH (A) : 3.200 REMARK 200 RESOLUTION RANGE LOW (A) : 48.680 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : NULL REMARK 200 DATA REDUNDANCY : 6.800 REMARK 200 R MERGE (I) : 0.17900 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 3.20 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 3.30 REMARK 200 COMPLETENESS FOR SHELL (%) : 98.4 REMARK 200 DATA REDUNDANCY IN SHELL : 6.75 REMARK 200 R MERGE FOR SHELL (I) : 1.04000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.600 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 4F0Y REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 39.18 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.02 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 1.65 M MGSO4, PH 9.0, VAPOR DIFFUSION, REMARK 280 HANGING DROP, TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 63 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z REMARK 290 3555 -X+Y,-X,Z REMARK 290 4555 -X,-Y,Z+1/2 REMARK 290 5555 Y,-X+Y,Z+1/2 REMARK 290 6555 X-Y,X,Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 39.76900 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 39.76900 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 39.76900 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 5390 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 23430 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -34.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 109 REMARK 465 ARG A 110 REMARK 465 GLY A 111 REMARK 465 SER A 112 REMARK 465 HIS A 113 REMARK 465 HIS A 114 REMARK 465 HIS A 115 REMARK 465 HIS A 116 REMARK 465 HIS A 117 REMARK 465 HIS A 118 REMARK 465 GLY A 119 REMARK 465 SER A 120 REMARK 465 ASN A 121 REMARK 465 SER A 122 REMARK 465 ASN A 123 REMARK 465 ASN A 124 REMARK 465 ILE A 125 REMARK 465 CYS A 126 REMARK 465 ILE A 127 REMARK 465 MET B 109 REMARK 465 ARG B 110 REMARK 465 GLY B 111 REMARK 465 SER B 112 REMARK 465 HIS B 113 REMARK 465 HIS B 114 REMARK 465 HIS B 115 REMARK 465 HIS B 116 REMARK 465 HIS B 117 REMARK 465 HIS B 118 REMARK 465 GLY B 119 REMARK 465 SER B 120 REMARK 465 ASN B 121 REMARK 465 SER B 122 REMARK 465 ASN B 123 REMARK 465 ASN B 124 REMARK 465 ILE B 125 REMARK 465 CYS B 126 REMARK 465 ILE B 127 REMARK 465 MET C 109 REMARK 465 ARG C 110 REMARK 465 GLY C 111 REMARK 465 SER C 112 REMARK 465 HIS C 113 REMARK 465 HIS C 114 REMARK 465 HIS C 115 REMARK 465 HIS C 116 REMARK 465 HIS C 117 REMARK 465 HIS C 118 REMARK 465 GLY C 119 REMARK 465 SER C 120 REMARK 465 ASN C 121 REMARK 465 SER C 122 REMARK 465 ASN C 123 REMARK 465 ASN C 124 REMARK 465 ILE C 125 REMARK 465 CYS C 126 REMARK 465 ILE C 127 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ARG A 289 CG CD NE CZ NH1 NH2 REMARK 470 GLN B 277 CG CD OE1 NE2 REMARK 470 ARG B 278 CG CD NE CZ NH1 NH2 REMARK 470 ILE B 280 CG1 CG2 CD1 REMARK 470 ARG B 281 CG CD NE CZ NH1 NH2 REMARK 470 GLN B 303 CG CD OE1 NE2 REMARK 470 THR B 304 OG1 CG2 REMARK 470 SER B 305 OG REMARK 470 SER C 248 OG REMARK 470 ARG C 249 CG CD NE CZ NH1 NH2 REMARK 470 GLU C 250 CG CD OE1 OE2 REMARK 470 ASN C 251 CG OD1 ND2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 SD MET C 274 NE2 GLN C 277 1.55 REMARK 500 O TYR C 242 ND2 ASN C 276 1.68 REMARK 500 O TYR B 242 ND2 ASN B 276 1.69 REMARK 500 CG MET C 274 NE2 GLN C 277 1.80 REMARK 500 OD1 ASN A 245 N ARG A 249 2.03 REMARK 500 OH TYR B 317 OH TYR C 317 2.10 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 OE2 GLU A 142 CA THR B 304 4785 0.91 REMARK 500 OE2 GLU A 142 CB THR B 304 4785 1.20 REMARK 500 CD GLU A 142 CB THR B 304 4785 1.43 REMARK 500 OE1 GLU A 142 N THR B 304 4785 1.81 REMARK 500 CD GLU A 142 CA THR B 304 4785 1.85 REMARK 500 OE2 GLU A 142 N THR B 304 4785 1.94 REMARK 500 CG GLU A 142 CB THR B 304 4785 1.99 REMARK 500 O ASN A 247 CB SER B 153 3685 2.05 REMARK 500 ND2 ASN A 247 OE1 GLN B 146 3685 2.06 REMARK 500 CD GLU A 142 N THR B 304 4785 2.07 REMARK 500 O ASN A 246 ND2 ASN B 154 3685 2.16 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 CYS A 287 CB CYS A 287 SG 0.118 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 CYS A 287 CA - CB - SG ANGL. DEV. = 8.6 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 139 71.76 38.75 REMARK 500 VAL A 178 -60.54 -123.85 REMARK 500 ASN A 247 -4.46 88.13 REMARK 500 SER A 305 32.99 -80.81 REMARK 500 ASN B 139 74.23 36.75 REMARK 500 SER B 153 -162.28 -163.84 REMARK 500 VAL B 178 -59.64 -125.60 REMARK 500 ASN B 276 -125.14 58.70 REMARK 500 GLN B 277 -163.38 83.75 REMARK 500 SER B 305 -134.09 61.79 REMARK 500 ASN C 139 71.84 37.67 REMARK 500 VAL C 178 -61.57 -120.82 REMARK 500 ASN C 245 58.06 35.88 REMARK 500 GLU C 250 178.50 78.28 REMARK 500 ASN C 276 -117.75 58.14 REMARK 500 GLN C 277 -123.14 69.97 REMARK 500 REMARK 500 REMARK: NULL DBREF 4ZDG A 121 323 UNP D6BP13 D6BP13_9ADEN 121 323 DBREF 4ZDG B 121 323 UNP D6BP13 D6BP13_9ADEN 121 323 DBREF 4ZDG C 121 323 UNP D6BP13 D6BP13_9ADEN 121 323 SEQADV 4ZDG MET A 109 UNP D6BP13 INITIATING METHIONINE SEQADV 4ZDG ARG A 110 UNP D6BP13 EXPRESSION TAG SEQADV 4ZDG GLY A 111 UNP D6BP13 EXPRESSION TAG SEQADV 4ZDG SER A 112 UNP D6BP13 EXPRESSION TAG SEQADV 4ZDG HIS A 113 UNP D6BP13 EXPRESSION TAG SEQADV 4ZDG HIS A 114 UNP D6BP13 EXPRESSION TAG SEQADV 4ZDG HIS A 115 UNP D6BP13 EXPRESSION TAG SEQADV 4ZDG HIS A 116 UNP D6BP13 EXPRESSION TAG SEQADV 4ZDG HIS A 117 UNP D6BP13 EXPRESSION TAG SEQADV 4ZDG HIS A 118 UNP D6BP13 EXPRESSION TAG SEQADV 4ZDG GLY A 119 UNP D6BP13 EXPRESSION TAG SEQADV 4ZDG SER A 120 UNP D6BP13 EXPRESSION TAG SEQADV 4ZDG MET B 109 UNP D6BP13 INITIATING METHIONINE SEQADV 4ZDG ARG B 110 UNP D6BP13 EXPRESSION TAG SEQADV 4ZDG GLY B 111 UNP D6BP13 EXPRESSION TAG SEQADV 4ZDG SER B 112 UNP D6BP13 EXPRESSION TAG SEQADV 4ZDG HIS B 113 UNP D6BP13 EXPRESSION TAG SEQADV 4ZDG HIS B 114 UNP D6BP13 EXPRESSION TAG SEQADV 4ZDG HIS B 115 UNP D6BP13 EXPRESSION TAG SEQADV 4ZDG HIS B 116 UNP D6BP13 EXPRESSION TAG SEQADV 4ZDG HIS B 117 UNP D6BP13 EXPRESSION TAG SEQADV 4ZDG HIS B 118 UNP D6BP13 EXPRESSION TAG SEQADV 4ZDG GLY B 119 UNP D6BP13 EXPRESSION TAG SEQADV 4ZDG SER B 120 UNP D6BP13 EXPRESSION TAG SEQADV 4ZDG MET C 109 UNP D6BP13 INITIATING METHIONINE SEQADV 4ZDG ARG C 110 UNP D6BP13 EXPRESSION TAG SEQADV 4ZDG GLY C 111 UNP D6BP13 EXPRESSION TAG SEQADV 4ZDG SER C 112 UNP D6BP13 EXPRESSION TAG SEQADV 4ZDG HIS C 113 UNP D6BP13 EXPRESSION TAG SEQADV 4ZDG HIS C 114 UNP D6BP13 EXPRESSION TAG SEQADV 4ZDG HIS C 115 UNP D6BP13 EXPRESSION TAG SEQADV 4ZDG HIS C 116 UNP D6BP13 EXPRESSION TAG SEQADV 4ZDG HIS C 117 UNP D6BP13 EXPRESSION TAG SEQADV 4ZDG HIS C 118 UNP D6BP13 EXPRESSION TAG SEQADV 4ZDG GLY C 119 UNP D6BP13 EXPRESSION TAG SEQADV 4ZDG SER C 120 UNP D6BP13 EXPRESSION TAG SEQRES 1 A 215 MET ARG GLY SER HIS HIS HIS HIS HIS HIS GLY SER ASN SEQRES 2 A 215 SER ASN ASN ILE CYS ILE ASP ASP ASN ILE ASN THR LEU SEQRES 3 A 215 TRP THR GLY VAL ASN PRO THR GLU ALA ASN CYS GLN MET SEQRES 4 A 215 MET ASP SER SER GLU SER ASN ASP CYS LYS LEU ILE LEU SEQRES 5 A 215 THR LEU VAL LYS THR GLY ALA LEU VAL THR ALA PHE VAL SEQRES 6 A 215 TYR VAL ILE GLY VAL SER ASN ASN PHE ASN MET LEU THR SEQRES 7 A 215 THR TYR ARG ASN ILE ASN PHE THR ALA GLU LEU PHE PHE SEQRES 8 A 215 ASP SER ALA GLY ASN LEU LEU THR SER LEU SER SER LEU SEQRES 9 A 215 LYS THR PRO LEU ASN HIS LYS SER GLY GLN ASN MET ALA SEQRES 10 A 215 THR GLY ALA ILE THR ASN ALA LYS SER PHE MET PRO SER SEQRES 11 A 215 THR THR ALA TYR PRO PHE ASN ASN ASN SER ARG GLU ASN SEQRES 12 A 215 TYR ILE TYR GLY THR CYS HIS TYR THR ALA SER ASP HIS SEQRES 13 A 215 THR ALA PHE PRO ILE ASP ILE SER VAL MET LEU ASN GLN SEQRES 14 A 215 ARG ALA ILE ARG ALA ASP THR SER TYR CYS ILE ARG ILE SEQRES 15 A 215 THR TRP SER TRP ASN THR GLY ASP ALA PRO GLU GLY GLN SEQRES 16 A 215 THR SER ALA THR THR LEU VAL THR SER PRO PHE THR PHE SEQRES 17 A 215 TYR TYR ILE ARG GLU ASP ASP SEQRES 1 B 215 MET ARG GLY SER HIS HIS HIS HIS HIS HIS GLY SER ASN SEQRES 2 B 215 SER ASN ASN ILE CYS ILE ASP ASP ASN ILE ASN THR LEU SEQRES 3 B 215 TRP THR GLY VAL ASN PRO THR GLU ALA ASN CYS GLN MET SEQRES 4 B 215 MET ASP SER SER GLU SER ASN ASP CYS LYS LEU ILE LEU SEQRES 5 B 215 THR LEU VAL LYS THR GLY ALA LEU VAL THR ALA PHE VAL SEQRES 6 B 215 TYR VAL ILE GLY VAL SER ASN ASN PHE ASN MET LEU THR SEQRES 7 B 215 THR TYR ARG ASN ILE ASN PHE THR ALA GLU LEU PHE PHE SEQRES 8 B 215 ASP SER ALA GLY ASN LEU LEU THR SER LEU SER SER LEU SEQRES 9 B 215 LYS THR PRO LEU ASN HIS LYS SER GLY GLN ASN MET ALA SEQRES 10 B 215 THR GLY ALA ILE THR ASN ALA LYS SER PHE MET PRO SER SEQRES 11 B 215 THR THR ALA TYR PRO PHE ASN ASN ASN SER ARG GLU ASN SEQRES 12 B 215 TYR ILE TYR GLY THR CYS HIS TYR THR ALA SER ASP HIS SEQRES 13 B 215 THR ALA PHE PRO ILE ASP ILE SER VAL MET LEU ASN GLN SEQRES 14 B 215 ARG ALA ILE ARG ALA ASP THR SER TYR CYS ILE ARG ILE SEQRES 15 B 215 THR TRP SER TRP ASN THR GLY ASP ALA PRO GLU GLY GLN SEQRES 16 B 215 THR SER ALA THR THR LEU VAL THR SER PRO PHE THR PHE SEQRES 17 B 215 TYR TYR ILE ARG GLU ASP ASP SEQRES 1 C 215 MET ARG GLY SER HIS HIS HIS HIS HIS HIS GLY SER ASN SEQRES 2 C 215 SER ASN ASN ILE CYS ILE ASP ASP ASN ILE ASN THR LEU SEQRES 3 C 215 TRP THR GLY VAL ASN PRO THR GLU ALA ASN CYS GLN MET SEQRES 4 C 215 MET ASP SER SER GLU SER ASN ASP CYS LYS LEU ILE LEU SEQRES 5 C 215 THR LEU VAL LYS THR GLY ALA LEU VAL THR ALA PHE VAL SEQRES 6 C 215 TYR VAL ILE GLY VAL SER ASN ASN PHE ASN MET LEU THR SEQRES 7 C 215 THR TYR ARG ASN ILE ASN PHE THR ALA GLU LEU PHE PHE SEQRES 8 C 215 ASP SER ALA GLY ASN LEU LEU THR SER LEU SER SER LEU SEQRES 9 C 215 LYS THR PRO LEU ASN HIS LYS SER GLY GLN ASN MET ALA SEQRES 10 C 215 THR GLY ALA ILE THR ASN ALA LYS SER PHE MET PRO SER SEQRES 11 C 215 THR THR ALA TYR PRO PHE ASN ASN ASN SER ARG GLU ASN SEQRES 12 C 215 TYR ILE TYR GLY THR CYS HIS TYR THR ALA SER ASP HIS SEQRES 13 C 215 THR ALA PHE PRO ILE ASP ILE SER VAL MET LEU ASN GLN SEQRES 14 C 215 ARG ALA ILE ARG ALA ASP THR SER TYR CYS ILE ARG ILE SEQRES 15 C 215 THR TRP SER TRP ASN THR GLY ASP ALA PRO GLU GLY GLN SEQRES 16 C 215 THR SER ALA THR THR LEU VAL THR SER PRO PHE THR PHE SEQRES 17 C 215 TYR TYR ILE ARG GLU ASP ASP HELIX 1 AA1 ASP A 128 ILE A 131 5 4 HELIX 2 AA2 SER A 179 MET A 184 1 6 HELIX 3 AA3 LEU A 185 TYR A 188 5 4 HELIX 4 AA4 ASN A 231 MET A 236 5 6 HELIX 5 AA5 ASP B 128 ILE B 131 5 4 HELIX 6 AA6 SER B 179 MET B 184 1 6 HELIX 7 AA7 LEU B 185 TYR B 188 5 4 HELIX 8 AA8 ASN B 231 MET B 236 5 6 HELIX 9 AA9 ASP C 128 ILE C 131 5 4 HELIX 10 AB1 SER C 179 MET C 184 1 6 HELIX 11 AB2 LEU C 185 TYR C 188 5 4 HELIX 12 AB3 ASN C 231 MET C 236 5 6 SHEET 1 AA1 4 THR A 133 TRP A 135 0 SHEET 2 AA1 4 CYS A 156 THR A 165 -1 O LEU A 162 N LEU A 134 SHEET 3 AA1 4 LEU A 168 GLY A 177 -1 O THR A 170 N VAL A 163 SHEET 4 AA1 4 PHE A 314 ILE A 319 -1 O PHE A 314 N VAL A 173 SHEET 1 AA2 4 ASN A 190 PHE A 199 0 SHEET 2 AA2 4 TYR A 286 ASN A 295 -1 O TRP A 292 N PHE A 193 SHEET 3 AA2 4 ALA A 266 LEU A 275 -1 N ASP A 270 O SER A 293 SHEET 4 AA2 4 ILE A 253 THR A 260 -1 N CYS A 257 O ILE A 269 SHEET 1 AA3 2 LYS A 219 SER A 220 0 SHEET 2 AA3 2 ASN A 223 MET A 224 -1 O ASN A 223 N SER A 220 SHEET 1 AA4 4 THR B 133 TRP B 135 0 SHEET 2 AA4 4 CYS B 156 THR B 165 -1 O LEU B 162 N LEU B 134 SHEET 3 AA4 4 LEU B 168 GLY B 177 -1 O THR B 170 N VAL B 163 SHEET 4 AA4 4 PHE B 314 ILE B 319 -1 O PHE B 314 N VAL B 173 SHEET 1 AA5 4 ASN B 190 PHE B 199 0 SHEET 2 AA5 4 TYR B 286 ASN B 295 -1 O ILE B 288 N LEU B 197 SHEET 3 AA5 4 ALA B 266 LEU B 275 -1 N ASP B 270 O SER B 293 SHEET 4 AA5 4 TYR B 252 THR B 260 -1 N CYS B 257 O ILE B 269 SHEET 1 AA6 2 LYS B 219 SER B 220 0 SHEET 2 AA6 2 ASN B 223 MET B 224 -1 O ASN B 223 N SER B 220 SHEET 1 AA7 4 THR C 133 TRP C 135 0 SHEET 2 AA7 4 CYS C 156 THR C 165 -1 O LEU C 162 N LEU C 134 SHEET 3 AA7 4 LEU C 168 GLY C 177 -1 O PHE C 172 N THR C 161 SHEET 4 AA7 4 PHE C 314 ILE C 319 -1 O PHE C 316 N ALA C 171 SHEET 1 AA8 4 ASN C 190 PHE C 199 0 SHEET 2 AA8 4 TYR C 286 ASN C 295 -1 O ILE C 288 N LEU C 197 SHEET 3 AA8 4 ALA C 266 LEU C 275 -1 N ASP C 270 O SER C 293 SHEET 4 AA8 4 ILE C 253 THR C 260 -1 N CYS C 257 O ILE C 269 SHEET 1 AA9 2 LYS C 219 SER C 220 0 SHEET 2 AA9 2 ASN C 223 MET C 224 -1 O ASN C 223 N SER C 220 CRYST1 112.414 112.414 79.538 90.00 90.00 120.00 P 63 18 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.008896 0.005136 0.000000 0.00000 SCALE2 0.000000 0.010272 0.000000 0.00000 SCALE3 0.000000 0.000000 0.012573 0.00000