HEADER MEMBRANE PROTEIN 17-APR-15 4ZDM TITLE PLEUROBRACHIA BACHEI IGLUR3 LBD GLYCINE COMPLEX COMPND MOL_ID: 1; COMPND 2 MOLECULE: GLUTAMATE RECEPTOR KAINATE-LIKE PROTEIN; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: PBIGLUR3; COMPND 5 ENGINEERED: YES; COMPND 6 OTHER_DETAILS: THE CONSTRUCT CONTAINS RESIDUES N399-D519 AND D660- COMPND 7 N795 OF THE PBIGLUR3 LIGAND BINDING DOMAIN CONNECTED BY A SYNTHETIC COMPND 8 GT LINKER, WITH AN E399N MUTATION OF THE NATIVE SEQUENCE INTRODUCED COMPND 9 TO FACILITATE REMOVAL OF THE AFFINITY PURIFICATION TAG. SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: PLEUROBRACHIA BACHEI; SOURCE 3 ORGANISM_COMMON: SEA GOOSEBERRY; SOURCE 4 ORGANISM_TAXID: 34499; SOURCE 5 GENE: PBIGLUR3; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: ORIGAMI B(DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET22 KEYWDS MEMBRANE PROTEIN, GLUTAMATE RECEPTOR, ION CHANNEL EXPDTA X-RAY DIFFRACTION AUTHOR R.J.GREY,M.L.MAYER REVDAT 4 27-SEP-23 4ZDM 1 JRNL REMARK REVDAT 3 18-NOV-15 4ZDM 1 JRNL REVDAT 2 28-OCT-15 4ZDM 1 JRNL REVDAT 1 21-OCT-15 4ZDM 0 JRNL AUTH R.ALBERSTEIN,R.GREY,A.ZIMMET,D.K.SIMMONS,M.L.MAYER JRNL TITL GLYCINE ACTIVATED ION CHANNEL SUBUNITS ENCODED BY CTENOPHORE JRNL TITL 2 GLUTAMATE RECEPTOR GENES. JRNL REF PROC.NATL.ACAD.SCI.USA V. 112 E6048 2015 JRNL REFN ESSN 1091-6490 JRNL PMID 26460032 JRNL DOI 10.1073/PNAS.1513771112 REMARK 2 REMARK 2 RESOLUTION. 1.50 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX DEV_1951 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.50 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 29.38 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.350 REMARK 3 COMPLETENESS FOR RANGE (%) : 98.2 REMARK 3 NUMBER OF REFLECTIONS : 65828 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.157 REMARK 3 R VALUE (WORKING SET) : 0.156 REMARK 3 FREE R VALUE : 0.177 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.840 REMARK 3 FREE R VALUE TEST SET COUNT : 3184 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 29.3892 - 4.2617 0.97 2938 151 0.1725 0.1960 REMARK 3 2 4.2617 - 3.3842 1.00 2847 164 0.1489 0.1731 REMARK 3 3 3.3842 - 2.9569 1.00 2822 150 0.1709 0.1716 REMARK 3 4 2.9569 - 2.6868 1.00 2798 142 0.1525 0.1889 REMARK 3 5 2.6868 - 2.4943 1.00 2804 131 0.1485 0.1573 REMARK 3 6 2.4943 - 2.3473 1.00 2769 151 0.1427 0.1580 REMARK 3 7 2.3473 - 2.2298 1.00 2768 127 0.1346 0.1478 REMARK 3 8 2.2298 - 2.1327 0.99 2756 135 0.1351 0.1611 REMARK 3 9 2.1327 - 2.0507 0.99 2740 141 0.1356 0.1595 REMARK 3 10 2.0507 - 1.9799 0.99 2737 136 0.1425 0.1502 REMARK 3 11 1.9799 - 1.9180 0.99 2722 152 0.1488 0.1591 REMARK 3 12 1.9180 - 1.8632 0.99 2721 141 0.1516 0.1740 REMARK 3 13 1.8632 - 1.8142 0.98 2718 128 0.1543 0.1700 REMARK 3 14 1.8142 - 1.7699 0.98 2686 153 0.1580 0.1940 REMARK 3 15 1.7699 - 1.7297 0.99 2723 137 0.1547 0.1941 REMARK 3 16 1.7297 - 1.6929 0.99 2682 135 0.1631 0.2048 REMARK 3 17 1.6929 - 1.6590 0.97 2686 124 0.1537 0.1980 REMARK 3 18 1.6590 - 1.6277 0.99 2699 151 0.1638 0.1939 REMARK 3 19 1.6277 - 1.5986 0.98 2681 130 0.1758 0.1837 REMARK 3 20 1.5986 - 1.5715 0.98 2688 133 0.1825 0.2261 REMARK 3 21 1.5715 - 1.5462 0.98 2684 116 0.1977 0.2226 REMARK 3 22 1.5462 - 1.5224 0.96 2619 136 0.2044 0.2173 REMARK 3 23 1.5224 - 1.5000 0.86 2356 120 0.2261 0.2439 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.120 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 15.840 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.015 2082 REMARK 3 ANGLE : 1.567 2828 REMARK 3 CHIRALITY : 0.072 306 REMARK 3 PLANARITY : 0.009 380 REMARK 3 DIHEDRAL : 12.897 787 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 10 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: (CHAIN A AND RESID 2:8) REMARK 3 ORIGIN FOR THE GROUP (A): -69.6085 27.3665 24.5103 REMARK 3 T TENSOR REMARK 3 T11: 0.1575 T22: 0.1384 REMARK 3 T33: 0.1350 T12: -0.0106 REMARK 3 T13: -0.0397 T23: -0.0242 REMARK 3 L TENSOR REMARK 3 L11: 0.0039 L22: 0.0051 REMARK 3 L33: 0.0040 L12: 0.0056 REMARK 3 L13: 0.0006 L23: -0.0008 REMARK 3 S TENSOR REMARK 3 S11: -0.0460 S12: -0.0517 S13: 0.0315 REMARK 3 S21: 0.0271 S22: 0.0073 S23: -0.0111 REMARK 3 S31: -0.0421 S32: 0.0648 S33: -0.0000 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: (CHAIN A AND RESID 9:46) REMARK 3 ORIGIN FOR THE GROUP (A): -65.9501 10.7961 10.0935 REMARK 3 T TENSOR REMARK 3 T11: 0.1233 T22: 0.0446 REMARK 3 T33: 0.1358 T12: 0.0236 REMARK 3 T13: 0.0082 T23: 0.0115 REMARK 3 L TENSOR REMARK 3 L11: 0.0416 L22: 0.0255 REMARK 3 L33: 0.0460 L12: 0.0064 REMARK 3 L13: -0.0098 L23: -0.0093 REMARK 3 S TENSOR REMARK 3 S11: -0.0918 S12: -0.0821 S13: -0.1500 REMARK 3 S21: 0.0031 S22: 0.0084 S23: 0.0414 REMARK 3 S31: 0.1078 S32: 0.0846 S33: -0.0444 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: (CHAIN A AND RESID 47:82) REMARK 3 ORIGIN FOR THE GROUP (A): -71.2220 18.7845 7.2624 REMARK 3 T TENSOR REMARK 3 T11: 0.1040 T22: 0.0867 REMARK 3 T33: 0.0915 T12: 0.0063 REMARK 3 T13: -0.0330 T23: -0.0156 REMARK 3 L TENSOR REMARK 3 L11: 0.1095 L22: 0.0359 REMARK 3 L33: 0.0445 L12: 0.0302 REMARK 3 L13: -0.0837 L23: -0.0188 REMARK 3 S TENSOR REMARK 3 S11: -0.0589 S12: 0.0208 S13: -0.0909 REMARK 3 S21: -0.0188 S22: 0.0112 S23: 0.0802 REMARK 3 S31: -0.0152 S32: -0.0470 S33: -0.0389 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: (CHAIN A AND RESID 83:102) REMARK 3 ORIGIN FOR THE GROUP (A): -71.0694 24.1777 2.8483 REMARK 3 T TENSOR REMARK 3 T11: 0.0853 T22: 0.0633 REMARK 3 T33: 0.0604 T12: 0.0078 REMARK 3 T13: -0.0180 T23: -0.0010 REMARK 3 L TENSOR REMARK 3 L11: 0.0203 L22: 0.0123 REMARK 3 L33: 0.0215 L12: 0.0099 REMARK 3 L13: -0.0076 L23: 0.0022 REMARK 3 S TENSOR REMARK 3 S11: 0.0152 S12: 0.0790 S13: -0.0428 REMARK 3 S21: -0.0204 S22: -0.0027 S23: 0.0447 REMARK 3 S31: -0.0545 S32: -0.0635 S33: 0.0063 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: (CHAIN A AND RESID 103:121) REMARK 3 ORIGIN FOR THE GROUP (A): -59.9983 23.8349 -1.9302 REMARK 3 T TENSOR REMARK 3 T11: 0.1410 T22: 0.0680 REMARK 3 T33: 0.0791 T12: 0.0087 REMARK 3 T13: -0.0191 T23: -0.0144 REMARK 3 L TENSOR REMARK 3 L11: 0.0339 L22: 0.0713 REMARK 3 L33: 0.0416 L12: 0.0590 REMARK 3 L13: -0.0321 L23: -0.0175 REMARK 3 S TENSOR REMARK 3 S11: 0.0486 S12: -0.0085 S13: -0.0305 REMARK 3 S21: -0.1256 S22: 0.0173 S23: -0.0411 REMARK 3 S31: -0.0553 S32: -0.0124 S33: 0.0047 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: (CHAIN A AND RESID 122:152) REMARK 3 ORIGIN FOR THE GROUP (A): -58.2266 17.3907 -19.0787 REMARK 3 T TENSOR REMARK 3 T11: 0.3022 T22: 0.1072 REMARK 3 T33: 0.0108 T12: 0.0276 REMARK 3 T13: -0.0069 T23: -0.1014 REMARK 3 L TENSOR REMARK 3 L11: 0.0133 L22: 0.0273 REMARK 3 L33: 0.0178 L12: 0.0023 REMARK 3 L13: 0.0162 L23: 0.0086 REMARK 3 S TENSOR REMARK 3 S11: -0.0371 S12: 0.0507 S13: -0.0365 REMARK 3 S21: -0.3169 S22: -0.0789 S23: -0.0021 REMARK 3 S31: 0.0030 S32: -0.0458 S33: -0.0962 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: (CHAIN A AND RESID 153:192) REMARK 3 ORIGIN FOR THE GROUP (A): -61.7437 16.5401 -15.1019 REMARK 3 T TENSOR REMARK 3 T11: 0.2811 T22: 0.0336 REMARK 3 T33: 0.0903 T12: 0.0283 REMARK 3 T13: -0.0447 T23: -0.1009 REMARK 3 L TENSOR REMARK 3 L11: 0.2208 L22: 0.1296 REMARK 3 L33: 0.1563 L12: 0.1151 REMARK 3 L13: -0.0458 L23: -0.0990 REMARK 3 S TENSOR REMARK 3 S11: -0.0922 S12: 0.1758 S13: -0.0453 REMARK 3 S21: -0.3174 S22: -0.1199 S23: 0.0275 REMARK 3 S31: -0.0647 S32: 0.0178 S33: -0.0865 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: (CHAIN A AND RESID 193:216) REMARK 3 ORIGIN FOR THE GROUP (A): -51.6640 16.5430 -8.3936 REMARK 3 T TENSOR REMARK 3 T11: 0.1601 T22: 0.1048 REMARK 3 T33: 0.1111 T12: 0.0339 REMARK 3 T13: 0.0168 T23: -0.0219 REMARK 3 L TENSOR REMARK 3 L11: 0.0265 L22: 0.0023 REMARK 3 L33: 0.0209 L12: 0.0073 REMARK 3 L13: 0.0171 L23: 0.0056 REMARK 3 S TENSOR REMARK 3 S11: -0.0359 S12: -0.0185 S13: -0.0616 REMARK 3 S21: -0.1156 S22: 0.0309 S23: -0.0478 REMARK 3 S31: -0.0012 S32: 0.2367 S33: -0.0128 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: (CHAIN A AND RESID 217:240) REMARK 3 ORIGIN FOR THE GROUP (A): -64.0286 29.0742 11.2577 REMARK 3 T TENSOR REMARK 3 T11: 0.1015 T22: 0.0756 REMARK 3 T33: 0.0734 T12: 0.0057 REMARK 3 T13: -0.0305 T23: -0.0071 REMARK 3 L TENSOR REMARK 3 L11: 0.0285 L22: 0.0002 REMARK 3 L33: 0.0549 L12: 0.0126 REMARK 3 L13: 0.0123 L23: -0.0099 REMARK 3 S TENSOR REMARK 3 S11: -0.0247 S12: -0.0259 S13: 0.0008 REMARK 3 S21: -0.0390 S22: 0.0051 S23: 0.0011 REMARK 3 S31: -0.1632 S32: 0.0353 S33: 0.0020 REMARK 3 TLS GROUP : 10 REMARK 3 SELECTION: (CHAIN A AND RESID 241:255) REMARK 3 ORIGIN FOR THE GROUP (A): -50.0702 15.0422 8.4859 REMARK 3 T TENSOR REMARK 3 T11: 0.1203 T22: 0.1527 REMARK 3 T33: 0.1802 T12: 0.0556 REMARK 3 T13: -0.0155 T23: 0.0124 REMARK 3 L TENSOR REMARK 3 L11: 0.0060 L22: 0.0146 REMARK 3 L33: 0.0090 L12: -0.0037 REMARK 3 L13: 0.0038 L23: -0.0072 REMARK 3 S TENSOR REMARK 3 S11: 0.0085 S12: -0.0779 S13: -0.0881 REMARK 3 S21: -0.0056 S22: -0.0099 S23: -0.0373 REMARK 3 S31: 0.0925 S32: 0.1836 S33: -0.0006 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4ZDM COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 23-APR-15. REMARK 100 THE DEPOSITION ID IS D_1000209079. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 18-MAR-15 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 22-ID REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.000 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : RAYONIX MX300HS REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 67078 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.500 REMARK 200 RESOLUTION RANGE LOW (A) : 30.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.7 REMARK 200 DATA REDUNDANCY : 10.90 REMARK 200 R MERGE (I) : 0.03900 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 59.4000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.50 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.53 REMARK 200 COMPLETENESS FOR SHELL (%) : 97.6 REMARK 200 DATA REDUNDANCY IN SHELL : 8.90 REMARK 200 R MERGE FOR SHELL (I) : 0.94000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.500 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: NULL REMARK 200 STARTING MODEL: 4YKI REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 65.42 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.56 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: RESERVOIR: 10% PEG 400, 1.6 M LI2SO4, REMARK 280 200 MM MGSO4, 100 MM CACODYLATE. PROTEIN BUFFER: 100 MM NACL, 10 REMARK 280 MM HEPES, PH 7.5, 0.5 MM EDTA, 2 MM GLUTAMATE, PH 6.5, VAPOR REMARK 280 DIFFUSION, HANGING DROP, TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 65 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+2/3 REMARK 290 3555 -X+Y,-X,Z+1/3 REMARK 290 4555 -X,-Y,Z+1/2 REMARK 290 5555 Y,-X+Y,Z+1/6 REMARK 290 6555 X-Y,X,Z+5/6 REMARK 290 7555 Y,X,-Z+2/3 REMARK 290 8555 X-Y,-Y,-Z REMARK 290 9555 -X,-X+Y,-Z+1/3 REMARK 290 10555 -Y,-X,-Z+1/6 REMARK 290 11555 -X+Y,Y,-Z+1/2 REMARK 290 12555 X,X-Y,-Z+5/6 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 37.07600 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 18.53800 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 27.80700 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 9.26900 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 46.34500 REMARK 290 SMTRY1 7 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 7 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 37.07600 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 9 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 9 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 9 0.000000 0.000000 -1.000000 18.53800 REMARK 290 SMTRY1 10 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 10 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 10 0.000000 0.000000 -1.000000 9.26900 REMARK 290 SMTRY1 11 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 11 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 11 0.000000 0.000000 -1.000000 27.80700 REMARK 290 SMTRY1 12 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 12 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 12 0.000000 0.000000 -1.000000 46.34500 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: THE DIMER PACKING OBSERVED IN THIS CRYSTAL FORM IS NOT REMARK 300 BIOLOGICALLY RELEVANT REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2230 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 21860 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -93.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 -159.85000 REMARK 350 BIOMT2 2 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 27.80700 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 711 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 1 REMARK 465 ASN A 70 REMARK 465 SER A 71 REMARK 465 THR A 72 REMARK 465 THR A 73 REMARK 465 GLY A 74 REMARK 465 ALA A 256 REMARK 465 SER A 257 REMARK 465 LYS A 258 REMARK 465 PRO A 259 REMARK 465 CYS A 260 REMARK 465 ASN A 261 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 HZ2 LYS A 121 O HOH A 407 1.56 REMARK 500 O HOH A 734 O HOH A 760 2.01 REMARK 500 O HOH A 640 O HOH A 731 2.05 REMARK 500 O HOH A 520 O HOH A 781 2.07 REMARK 500 O HOH A 572 O HOH A 589 2.09 REMARK 500 O HOH A 586 O HOH A 638 2.10 REMARK 500 O HOH A 742 O HOH A 798 2.10 REMARK 500 O HOH A 462 O HOH A 624 2.11 REMARK 500 O HOH A 466 O HOH A 564 2.12 REMARK 500 O HOH A 493 O HOH A 740 2.13 REMARK 500 NZ LYS A 200 O LYS A 255 2.15 REMARK 500 O HOH A 688 O HOH A 740 2.16 REMARK 500 O HOH A 431 O HOH A 726 2.18 REMARK 500 O HOH A 673 O HOH A 679 2.19 REMARK 500 OD1 ASN A 253 O HOH A 401 2.19 REMARK 500 O HOH A 591 O HOH A 751 2.19 REMARK 500 O HOH A 408 O HOH A 592 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 526 O HOH A 756 10555 1.83 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLU A 17 108.94 -171.19 REMARK 500 SER A 25 152.87 -49.02 REMARK 500 ASN A 53 60.38 60.46 REMARK 500 THR A 125 43.77 -82.18 REMARK 500 ASP A 190 -157.03 -151.07 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 802 DISTANCE = 6.18 ANGSTROMS REMARK 525 HOH A 803 DISTANCE = 6.39 ANGSTROMS REMARK 525 HOH A 804 DISTANCE = 6.58 ANGSTROMS REMARK 525 HOH A 805 DISTANCE = 6.71 ANGSTROMS REMARK 525 HOH A 806 DISTANCE = 6.77 ANGSTROMS REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA A 304 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 145 OD1 REMARK 620 2 GLU A 150 OE2 114.8 REMARK 620 3 HOH A 682 O 71.4 158.4 REMARK 620 4 HOH A 698 O 129.6 90.8 100.7 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA A 305 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 160 OD1 REMARK 620 2 HOH A 660 O 129.8 REMARK 620 N 1 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GLY A 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 302 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 303 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue NA A 304 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue NA A 305 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4YKI RELATED DB: PDB REMARK 900 RELATED ID: 4YKJ RELATED DB: PDB REMARK 900 RELATED ID: 4YKK RELATED DB: PDB REMARK 900 RELATED ID: 4YKP RELATED DB: PDB DBREF 4ZDM A 1 261 PDB 4ZDM 4ZDM 1 261 SEQRES 1 A 261 GLY SER ASN ASN LEU ASN GLY MET HIS LEU ARG LEU GLY SEQRES 2 A 261 ILE ILE PRO GLU MET PRO PHE ILE SER GLU PRO SER LEU SEQRES 3 A 261 GLY CYS THR ASN ILE ARG ASP PRO SER CYS TYR THR GLY SEQRES 4 A 261 VAL ASN VAL GLU ILE VAL SER MET MET SER GLN ASP LEU SEQRES 5 A 261 ASN PHE THR TYR ASN PHE ILE THR PRO GLU ASP LEU LYS SEQRES 6 A 261 PHE GLY GLY LYS ASN SER THR THR GLY GLU TRP ASN GLY SEQRES 7 A 261 LEU ILE ARG ASP LEU LEU ASP ASN LYS THR ASP MET ILE SEQRES 8 A 261 VAL VAL ALA LEU SER ASN ASN ALA VAL ARG LYS ALA ASP SEQRES 9 A 261 ILE ASP PHE SER LEU SER MET MET ASP GLY GLY LEU GLY SEQRES 10 A 261 ALA LEU VAL LYS SER ASP GLY THR ASP LEU SER HIS PRO SEQRES 11 A 261 LEU GLU LEU LEU ASN GLN ASP LYS TYR GLN TRP GLY VAL SEQRES 12 A 261 VAL ASP SER ARG ASN PRO GLU LEU LEU LEU ALA SER ASN SEQRES 13 A 261 GLN ASN ALA ASP TYR ASN ARG ILE ALA GLU ASP ALA VAL SEQRES 14 A 261 LYS VAL GLY SER TYR GLY GLU GLY LEU GLU ARG MET ARG SEQRES 15 A 261 ALA GLY GLY PHE VAL PHE ILE ASP GLU ILE PRO GLY ILE SEQRES 16 A 261 ASN TYR ALA THR LYS GLY GLU CYS ASP ILE VAL GLN ILE SEQRES 17 A 261 GLY GLU THR PHE GLN PRO PHE GLU LEU ALA PHE GLY LEU SEQRES 18 A 261 ARG LYS ASN SER PRO PHE LYS ASN LEU VAL ASP THR PHE SEQRES 19 A 261 MET LEU GLY ILE ARG GLU GLN GLY VAL ILE SER GLU LEU SEQRES 20 A 261 TYR ALA LYS TYR GLU ASN GLN LYS ALA SER LYS PRO CYS SEQRES 21 A 261 ASN HET GLY A 301 10 HET SO4 A 302 5 HET SO4 A 303 5 HET NA A 304 1 HET NA A 305 1 HETNAM GLY GLYCINE HETNAM SO4 SULFATE ION HETNAM NA SODIUM ION FORMUL 2 GLY C2 H5 N O2 FORMUL 3 SO4 2(O4 S 2-) FORMUL 5 NA 2(NA 1+) FORMUL 7 HOH *406(H2 O) HELIX 1 AA1 ASP A 33 TYR A 37 5 5 HELIX 2 AA2 GLY A 39 ASN A 53 1 15 HELIX 3 AA3 ASN A 77 ASP A 85 1 9 HELIX 4 AA4 ASN A 98 ALA A 103 1 6 HELIX 5 AA5 HIS A 129 GLN A 136 5 8 HELIX 6 AA6 ARG A 147 ASN A 156 1 10 HELIX 7 AA7 ASN A 158 ALA A 168 1 11 HELIX 8 AA8 SER A 173 ALA A 183 1 11 HELIX 9 AA9 PRO A 193 THR A 199 1 7 HELIX 10 AB1 PHE A 227 GLN A 241 1 15 HELIX 11 AB2 GLY A 242 LYS A 255 1 14 SHEET 1 AA1 8 PHE A 54 ILE A 59 0 SHEET 2 AA1 8 MET A 8 GLY A 13 1 N LEU A 10 O THR A 55 SHEET 3 AA1 8 MET A 90 SER A 96 1 O MET A 90 N GLY A 13 SHEET 4 AA1 8 PHE A 212 LEU A 221 -1 O GLY A 220 N ILE A 91 SHEET 5 AA1 8 MET A 112 LYS A 121 -1 N GLY A 114 O PHE A 215 SHEET 6 AA1 8 PHE A 186 ILE A 192 -1 O ILE A 192 N GLY A 115 SHEET 7 AA1 8 GLN A 140 VAL A 144 1 N GLN A 140 O VAL A 187 SHEET 8 AA1 8 VAL A 169 VAL A 171 1 O VAL A 169 N TRP A 141 SHEET 1 AA2 4 ASP A 106 PHE A 107 0 SHEET 2 AA2 4 PHE A 212 LEU A 221 -1 O LEU A 221 N ASP A 106 SHEET 3 AA2 4 MET A 112 LYS A 121 -1 N GLY A 114 O PHE A 215 SHEET 4 AA2 4 ILE A 205 GLN A 207 -1 O VAL A 206 N VAL A 120 SSBOND 1 CYS A 28 CYS A 36 1555 1555 2.21 LINK OD1 ASP A 145 NA NA A 304 1555 1555 2.41 LINK OE2BGLU A 150 NA NA A 304 1555 1555 2.34 LINK OD1 ASP A 160 NA NA A 305 1555 1555 2.23 LINK NA NA A 304 O HOH A 682 1555 1555 3.13 LINK NA NA A 304 O HOH A 698 1555 1555 2.65 LINK NA NA A 305 O HOH A 660 1555 1555 2.18 CISPEP 1 MET A 18 PRO A 19 0 9.33 CISPEP 2 ILE A 192 PRO A 193 0 0.99 CISPEP 3 ILE A 192 PRO A 193 0 -0.76 SITE 1 AC1 9 PHE A 66 ALA A 94 LEU A 95 SER A 96 SITE 2 AC1 9 ARG A 101 ARG A 147 ASN A 148 GLU A 191 SITE 3 AC1 9 HOH A 598 SITE 1 AC2 5 TYR A 161 PHE A 212 GLN A 213 HOH A 596 SITE 2 AC2 5 HOH A 657 SITE 1 AC3 5 HIS A 9 ARG A 11 ARG A 32 ASN A 57 SITE 2 AC3 5 LYS A 87 SITE 1 AC4 4 ASP A 145 GLU A 150 LYS A 170 HOH A 698 SITE 1 AC5 2 ASP A 160 HOH A 660 CRYST1 159.850 159.850 55.614 90.00 90.00 120.00 P 65 2 2 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.006256 0.003612 0.000000 0.00000 SCALE2 0.000000 0.007224 0.000000 0.00000 SCALE3 0.000000 0.000000 0.017981 0.00000