data_4ZDW # _entry.id 4ZDW # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.379 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 4ZDW pdb_00004zdw 10.2210/pdb4zdw/pdb WWPDB D_1000208839 ? ? # _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.entry_id 4ZDW _pdbx_database_status.recvd_initial_deposition_date 2015-04-20 _pdbx_database_status.SG_entry N _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_nmr_data ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Rinadi, F.C.' 1 'Collins, R.N.' 2 # _citation.abstract ? _citation.abstract_id_CAS ? _citation.book_id_ISBN ? _citation.book_publisher ? _citation.book_publisher_city ? _citation.book_title ? _citation.coordinate_linkage ? _citation.country UK _citation.database_id_Medline ? _citation.details ? _citation.id primary _citation.journal_abbrev 'Bmc Struct.Biol.' _citation.journal_id_ASTM ? _citation.journal_id_CSD ? _citation.journal_id_ISSN 1472-6807 _citation.journal_full ? _citation.journal_issue ? _citation.journal_volume 15 _citation.language ? _citation.page_first 14 _citation.page_last 14 _citation.title 'New insights into the molecular mechanism of the Rab GTPase Sec4p activation.' _citation.year 2015 _citation.database_id_CSD ? _citation.pdbx_database_id_DOI 10.1186/s12900-015-0041-5 _citation.pdbx_database_id_PubMed 26263895 _citation.unpublished_flag ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Rinaldi, F.C.' 1 ? primary 'Packer, M.' 2 ? primary 'Collins, R.' 3 ? # _cell.entry_id 4ZDW _cell.length_a 116.900 _cell.length_b 119.280 _cell.length_c 122.860 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 90.00 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4ZDW _symmetry.space_group_name_H-M 'I 2 2 2' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 23 # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'Ras-related protein SEC4' 19134.889 1 ? S29V ? ? 2 polymer man 'Rab guanine nucleotide exchange factor SEC2' 11067.187 2 ? ? ? ? 3 non-polymer syn "GUANOSINE-5'-DIPHOSPHATE" 443.201 1 ? ? ? ? 4 water nat water 18.015 16 ? ? ? ? # loop_ _entity_name_com.entity_id _entity_name_com.name 1 'Suppressor of RHO3 protein 6' 2 'GDP-GTP exchange factor SEC2' # loop_ _entity_poly.entity_id _entity_poly.type _entity_poly.nstd_linkage _entity_poly.nstd_monomer _entity_poly.pdbx_seq_one_letter_code _entity_poly.pdbx_seq_one_letter_code_can _entity_poly.pdbx_strand_id _entity_poly.pdbx_target_identifier 1 'polypeptide(L)' no no ;SSIMKILLIGDVGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQLWDTAGQERFRTITTAYYRGAMGII LVYDVTDERTFTNIKQWFKTVNEHANDEAQLLLVGNKSDMETRVVTADQGEALAKELGIPFIESSAKNDDNVNEIFFTLA KLIQEKIDSN ; ;SSIMKILLIGDVGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQLWDTAGQERFRTITTAYYRGAMGII LVYDVTDERTFTNIKQWFKTVNEHANDEAQLLLVGNKSDMETRVVTADQGEALAKELGIPFIESSAKNDDNVNEIFFTLA KLIQEKIDSN ; A ? 2 'polypeptide(L)' no no ;SNYNQLKEDYNTLKRELSDRDDEVKRLREDIAKENELRTKAEEEADKLNKEVEDLTASLFDEANNMVADARKEKYAIEIL NKRLTEQLREKDT ; ;SNYNQLKEDYNTLKRELSDRDDEVKRLREDIAKENELRTKAEEEADKLNKEVEDLTASLFDEANNMVADARKEKYAIEIL NKRLTEQLREKDT ; B,C ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 SER n 1 2 SER n 1 3 ILE n 1 4 MET n 1 5 LYS n 1 6 ILE n 1 7 LEU n 1 8 LEU n 1 9 ILE n 1 10 GLY n 1 11 ASP n 1 12 VAL n 1 13 GLY n 1 14 VAL n 1 15 GLY n 1 16 LYS n 1 17 SER n 1 18 CYS n 1 19 LEU n 1 20 LEU n 1 21 VAL n 1 22 ARG n 1 23 PHE n 1 24 VAL n 1 25 GLU n 1 26 ASP n 1 27 LYS n 1 28 PHE n 1 29 ASN n 1 30 PRO n 1 31 SER n 1 32 PHE n 1 33 ILE n 1 34 THR n 1 35 THR n 1 36 ILE n 1 37 GLY n 1 38 ILE n 1 39 ASP n 1 40 PHE n 1 41 LYS n 1 42 ILE n 1 43 LYS n 1 44 THR n 1 45 VAL n 1 46 ASP n 1 47 ILE n 1 48 ASN n 1 49 GLY n 1 50 LYS n 1 51 LYS n 1 52 VAL n 1 53 LYS n 1 54 LEU n 1 55 GLN n 1 56 LEU n 1 57 TRP n 1 58 ASP n 1 59 THR n 1 60 ALA n 1 61 GLY n 1 62 GLN n 1 63 GLU n 1 64 ARG n 1 65 PHE n 1 66 ARG n 1 67 THR n 1 68 ILE n 1 69 THR n 1 70 THR n 1 71 ALA n 1 72 TYR n 1 73 TYR n 1 74 ARG n 1 75 GLY n 1 76 ALA n 1 77 MET n 1 78 GLY n 1 79 ILE n 1 80 ILE n 1 81 LEU n 1 82 VAL n 1 83 TYR n 1 84 ASP n 1 85 VAL n 1 86 THR n 1 87 ASP n 1 88 GLU n 1 89 ARG n 1 90 THR n 1 91 PHE n 1 92 THR n 1 93 ASN n 1 94 ILE n 1 95 LYS n 1 96 GLN n 1 97 TRP n 1 98 PHE n 1 99 LYS n 1 100 THR n 1 101 VAL n 1 102 ASN n 1 103 GLU n 1 104 HIS n 1 105 ALA n 1 106 ASN n 1 107 ASP n 1 108 GLU n 1 109 ALA n 1 110 GLN n 1 111 LEU n 1 112 LEU n 1 113 LEU n 1 114 VAL n 1 115 GLY n 1 116 ASN n 1 117 LYS n 1 118 SER n 1 119 ASP n 1 120 MET n 1 121 GLU n 1 122 THR n 1 123 ARG n 1 124 VAL n 1 125 VAL n 1 126 THR n 1 127 ALA n 1 128 ASP n 1 129 GLN n 1 130 GLY n 1 131 GLU n 1 132 ALA n 1 133 LEU n 1 134 ALA n 1 135 LYS n 1 136 GLU n 1 137 LEU n 1 138 GLY n 1 139 ILE n 1 140 PRO n 1 141 PHE n 1 142 ILE n 1 143 GLU n 1 144 SER n 1 145 SER n 1 146 ALA n 1 147 LYS n 1 148 ASN n 1 149 ASP n 1 150 ASP n 1 151 ASN n 1 152 VAL n 1 153 ASN n 1 154 GLU n 1 155 ILE n 1 156 PHE n 1 157 PHE n 1 158 THR n 1 159 LEU n 1 160 ALA n 1 161 LYS n 1 162 LEU n 1 163 ILE n 1 164 GLN n 1 165 GLU n 1 166 LYS n 1 167 ILE n 1 168 ASP n 1 169 SER n 1 170 ASN n 2 1 SER n 2 2 ASN n 2 3 TYR n 2 4 ASN n 2 5 GLN n 2 6 LEU n 2 7 LYS n 2 8 GLU n 2 9 ASP n 2 10 TYR n 2 11 ASN n 2 12 THR n 2 13 LEU n 2 14 LYS n 2 15 ARG n 2 16 GLU n 2 17 LEU n 2 18 SER n 2 19 ASP n 2 20 ARG n 2 21 ASP n 2 22 ASP n 2 23 GLU n 2 24 VAL n 2 25 LYS n 2 26 ARG n 2 27 LEU n 2 28 ARG n 2 29 GLU n 2 30 ASP n 2 31 ILE n 2 32 ALA n 2 33 LYS n 2 34 GLU n 2 35 ASN n 2 36 GLU n 2 37 LEU n 2 38 ARG n 2 39 THR n 2 40 LYS n 2 41 ALA n 2 42 GLU n 2 43 GLU n 2 44 GLU n 2 45 ALA n 2 46 ASP n 2 47 LYS n 2 48 LEU n 2 49 ASN n 2 50 LYS n 2 51 GLU n 2 52 VAL n 2 53 GLU n 2 54 ASP n 2 55 LEU n 2 56 THR n 2 57 ALA n 2 58 SER n 2 59 LEU n 2 60 PHE n 2 61 ASP n 2 62 GLU n 2 63 ALA n 2 64 ASN n 2 65 ASN n 2 66 MET n 2 67 VAL n 2 68 ALA n 2 69 ASP n 2 70 ALA n 2 71 ARG n 2 72 LYS n 2 73 GLU n 2 74 LYS n 2 75 TYR n 2 76 ALA n 2 77 ILE n 2 78 GLU n 2 79 ILE n 2 80 LEU n 2 81 ASN n 2 82 LYS n 2 83 ARG n 2 84 LEU n 2 85 THR n 2 86 GLU n 2 87 GLN n 2 88 LEU n 2 89 ARG n 2 90 GLU n 2 91 LYS n 2 92 ASP n 2 93 THR n # loop_ _entity_src_gen.entity_id _entity_src_gen.pdbx_src_id _entity_src_gen.pdbx_alt_source_flag _entity_src_gen.pdbx_seq_type _entity_src_gen.pdbx_beg_seq_num _entity_src_gen.pdbx_end_seq_num _entity_src_gen.gene_src_common_name _entity_src_gen.gene_src_genus _entity_src_gen.pdbx_gene_src_gene _entity_src_gen.gene_src_species _entity_src_gen.gene_src_strain _entity_src_gen.gene_src_tissue _entity_src_gen.gene_src_tissue_fraction _entity_src_gen.gene_src_details _entity_src_gen.pdbx_gene_src_fragment _entity_src_gen.pdbx_gene_src_scientific_name _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id _entity_src_gen.pdbx_gene_src_variant _entity_src_gen.pdbx_gene_src_cell_line _entity_src_gen.pdbx_gene_src_atcc _entity_src_gen.pdbx_gene_src_organ _entity_src_gen.pdbx_gene_src_organelle _entity_src_gen.pdbx_gene_src_cell _entity_src_gen.pdbx_gene_src_cellular_location _entity_src_gen.host_org_common_name _entity_src_gen.pdbx_host_org_scientific_name _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id _entity_src_gen.host_org_genus _entity_src_gen.pdbx_host_org_gene _entity_src_gen.pdbx_host_org_organ _entity_src_gen.host_org_species _entity_src_gen.pdbx_host_org_tissue _entity_src_gen.pdbx_host_org_tissue_fraction _entity_src_gen.pdbx_host_org_strain _entity_src_gen.pdbx_host_org_variant _entity_src_gen.pdbx_host_org_cell_line _entity_src_gen.pdbx_host_org_atcc _entity_src_gen.pdbx_host_org_culture_collection _entity_src_gen.pdbx_host_org_cell _entity_src_gen.pdbx_host_org_organelle _entity_src_gen.pdbx_host_org_cellular_location _entity_src_gen.pdbx_host_org_vector_type _entity_src_gen.pdbx_host_org_vector _entity_src_gen.host_org_details _entity_src_gen.expression_system_id _entity_src_gen.plasmid_name _entity_src_gen.plasmid_details _entity_src_gen.pdbx_description 1 1 sample 'Biological sequence' 1 170 ;Baker's yeast ; ? 'SEC4, SRO6, YFL005W' ? 'ATCC 204508 / S288c' ? ? ? ? 'Saccharomyces cerevisiae (strain ATCC 204508 / S288c)' 559292 ? ? ? ? ? ? ? ? 'Escherichia coli' 511693 ? ? ? ? ? ? BL21 ? ? ? ? ? ? ? plasmid ? ? ? ppSUMO ? ? 2 1 sample 'Biological sequence' 1 93 ;Baker's yeast ; ? 'SEC2, YNL272C, N0641' ? 'ATCC 204508 / S288c' ? ? ? ? 'Saccharomyces cerevisiae (strain ATCC 204508 / S288c)' 559292 ? ? ? ? ? ? ? ? 'Escherichia coli' 511693 ? ? ? ? ? ? BL21 ? ? ? ? ? ? ? ? ? ? ? ? ? ? # loop_ _struct_ref.id _struct_ref.db_name _struct_ref.db_code _struct_ref.pdbx_db_accession _struct_ref.pdbx_db_isoform _struct_ref.entity_id _struct_ref.pdbx_seq_one_letter_code _struct_ref.pdbx_align_begin 1 UNP SEC4_YEAST P07560 ? 1 ;SIMKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQLWDTAGQERFRTITTAYYRGAMGIIL VYDVTDERTFTNIKQWFKTVNEHANDEAQLLLVGNKSDMETRVVTADQGEALAKELGIPFIESSAKNDDNVNEIFFTLAK LIQEKIDSN ; 19 2 UNP SEC2_YEAST P17065 ? 2 ;NYNQLKEDYNTLKRELSDRDDEVKRLREDIAKENELRTKAEEEADKLNKEVEDLTASLFDEANNMVADARKEKYAIEILN KRLTEQLREKDT ; 51 # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 4ZDW A 2 ? 170 ? P07560 19 ? 187 ? 19 187 2 2 4ZDW B 2 ? 93 ? P17065 51 ? 142 ? 51 142 3 2 4ZDW C 2 ? 93 ? P17065 51 ? 142 ? 51 142 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 4ZDW SER A 1 ? UNP P07560 ? ? 'expression tag' 18 1 1 4ZDW VAL A 12 ? UNP P07560 SER 29 'engineered mutation' 29 2 2 4ZDW SER B 1 ? UNP P17065 ? ? 'expression tag' 50 3 3 4ZDW SER C 1 ? UNP P17065 ? ? 'expression tag' 50 4 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 GDP 'RNA linking' n "GUANOSINE-5'-DIPHOSPHATE" ? 'C10 H15 N5 O11 P2' 443.201 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.absorpt_coefficient_mu ? _exptl.absorpt_correction_T_max ? _exptl.absorpt_correction_T_min ? _exptl.absorpt_correction_type ? _exptl.absorpt_process_details ? _exptl.entry_id 4ZDW _exptl.crystals_number ? _exptl.details ? _exptl.method 'X-RAY DIFFRACTION' _exptl.method_details ? # _exptl_crystal.colour ? _exptl_crystal.density_diffrn ? _exptl_crystal.density_Matthews 5.34 _exptl_crystal.density_method ? _exptl_crystal.density_percent_sol 76.76 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.id 1 _exptl_crystal.preparation ? _exptl_crystal.size_max ? _exptl_crystal.size_mid ? _exptl_crystal.size_min ? _exptl_crystal.size_rad ? _exptl_crystal.colour_lustre ? _exptl_crystal.colour_modifier ? _exptl_crystal.colour_primary ? _exptl_crystal.density_meas ? _exptl_crystal.density_meas_esd ? _exptl_crystal.density_meas_gt ? _exptl_crystal.density_meas_lt ? _exptl_crystal.density_meas_temp ? _exptl_crystal.density_meas_temp_esd ? _exptl_crystal.density_meas_temp_gt ? _exptl_crystal.density_meas_temp_lt ? _exptl_crystal.pdbx_crystal_image_url ? _exptl_crystal.pdbx_crystal_image_format ? _exptl_crystal.pdbx_mosaicity ? _exptl_crystal.pdbx_mosaicity_esd ? # _exptl_crystal_grow.apparatus ? _exptl_crystal_grow.atmosphere ? _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.details ? _exptl_crystal_grow.method 'VAPOR DIFFUSION, HANGING DROP' _exptl_crystal_grow.method_ref ? _exptl_crystal_grow.pH ? _exptl_crystal_grow.pressure ? _exptl_crystal_grow.pressure_esd ? _exptl_crystal_grow.seeding ? _exptl_crystal_grow.seeding_ref ? _exptl_crystal_grow.temp 293 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.temp_esd ? _exptl_crystal_grow.time ? _exptl_crystal_grow.pdbx_details ;Crystals were grown by mixing protein complex with a reservoir solution containing 24% PEG 3350, 0.2 M Sodium Citrate in a 1:1 ratio and with the addition of 10mM GDP to the drop. ; _exptl_crystal_grow.pdbx_pH_range ? # _diffrn.ambient_environment ? _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.ambient_temp_esd ? _diffrn.crystal_id 1 _diffrn.crystal_support ? _diffrn.crystal_treatment ? _diffrn.details ? _diffrn.id 1 _diffrn.ambient_pressure ? _diffrn.ambient_pressure_esd ? _diffrn.ambient_pressure_gt ? _diffrn.ambient_pressure_lt ? _diffrn.ambient_temp_gt ? _diffrn.ambient_temp_lt ? # _diffrn_detector.details mirrors _diffrn_detector.detector CCD _diffrn_detector.diffrn_id 1 _diffrn_detector.type 'ADSC QUANTUM 315r' _diffrn_detector.area_resol_mean ? _diffrn_detector.dtime ? _diffrn_detector.pdbx_frames_total ? _diffrn_detector.pdbx_collection_time_total ? _diffrn_detector.pdbx_collection_date 2009-08-06 # _diffrn_radiation.collimation ? _diffrn_radiation.diffrn_id 1 _diffrn_radiation.filter_edge ? _diffrn_radiation.inhomogeneity ? _diffrn_radiation.monochromator 'Si (111)' _diffrn_radiation.polarisn_norm ? _diffrn_radiation.polarisn_ratio ? _diffrn_radiation.probe ? _diffrn_radiation.type ? _diffrn_radiation.xray_symbol ? _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.pdbx_wavelength_list ? _diffrn_radiation.pdbx_wavelength ? _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_analyzer ? _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 1.08090 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.current ? _diffrn_source.details ? _diffrn_source.diffrn_id 1 _diffrn_source.power ? _diffrn_source.size ? _diffrn_source.source SYNCHROTRON _diffrn_source.target ? _diffrn_source.type 'NSLS BEAMLINE X29A' _diffrn_source.voltage ? _diffrn_source.take-off_angle ? _diffrn_source.pdbx_wavelength_list 1.08090 _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_synchrotron_beamline X29A _diffrn_source.pdbx_synchrotron_site NSLS # _reflns.B_iso_Wilson_estimate ? _reflns.entry_id 4ZDW _reflns.data_reduction_details ? _reflns.data_reduction_method ? _reflns.d_resolution_high 2.9 _reflns.d_resolution_low 85.44 _reflns.details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.number_all ? _reflns.number_obs 19416 _reflns.observed_criterion ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.observed_criterion_I_max ? _reflns.observed_criterion_I_min ? _reflns.observed_criterion_sigma_F ? _reflns.observed_criterion_sigma_I ? _reflns.percent_possible_obs 99.8 _reflns.R_free_details ? _reflns.Rmerge_F_all ? _reflns.Rmerge_F_obs ? _reflns.Friedel_coverage ? _reflns.number_gt ? _reflns.threshold_expression ? _reflns.pdbx_redundancy 7.9 _reflns.pdbx_Rmerge_I_obs 0.084 _reflns.pdbx_Rmerge_I_all ? _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_av_sigmaI 5.1 _reflns.pdbx_netI_over_sigmaI 13.4 _reflns.pdbx_res_netI_over_av_sigmaI_2 ? _reflns.pdbx_res_netI_over_sigmaI_2 ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_d_res_high_opt ? _reflns.pdbx_d_res_low_opt ? _reflns.pdbx_d_res_opt_method ? _reflns.phase_calculation_details ? _reflns.pdbx_Rrim_I_all ? _reflns.pdbx_Rpim_I_all ? _reflns.pdbx_d_opt ? _reflns.pdbx_number_measured_all ? _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 _reflns.pdbx_CC_half ? _reflns.pdbx_R_split ? # _reflns_shell.d_res_high 2.9 _reflns_shell.d_res_low 3.06 _reflns_shell.meanI_over_sigI_all ? _reflns_shell.meanI_over_sigI_obs 3.8 _reflns_shell.number_measured_all ? _reflns_shell.number_measured_obs ? _reflns_shell.number_possible ? _reflns_shell.number_unique_all ? _reflns_shell.number_unique_obs ? _reflns_shell.percent_possible_all 100 _reflns_shell.percent_possible_obs ? _reflns_shell.Rmerge_F_all ? _reflns_shell.Rmerge_F_obs ? _reflns_shell.Rmerge_I_all ? _reflns_shell.Rmerge_I_obs 0.51 _reflns_shell.meanI_over_sigI_gt ? _reflns_shell.meanI_over_uI_all ? _reflns_shell.meanI_over_uI_gt ? _reflns_shell.number_measured_gt ? _reflns_shell.number_unique_gt ? _reflns_shell.percent_possible_gt ? _reflns_shell.Rmerge_F_gt ? _reflns_shell.Rmerge_I_gt ? _reflns_shell.pdbx_redundancy 8.1 _reflns_shell.pdbx_Rsym_value ? _reflns_shell.pdbx_chi_squared ? _reflns_shell.pdbx_netI_over_sigmaI_all ? _reflns_shell.pdbx_netI_over_sigmaI_obs ? _reflns_shell.pdbx_Rrim_I_all ? _reflns_shell.pdbx_Rpim_I_all ? _reflns_shell.pdbx_rejects ? _reflns_shell.pdbx_ordinal 1 _reflns_shell.pdbx_diffrn_id 1 _reflns_shell.pdbx_CC_half ? _reflns_shell.pdbx_R_split ? # _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.entry_id 4ZDW _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.ls_number_reflns_obs 16492 _refine.ls_number_reflns_all ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F ? _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 85.44 _refine.ls_d_res_high 2.90 _refine.ls_percent_reflns_obs 89.47 _refine.ls_R_factor_obs 0.25993 _refine.ls_R_factor_all ? _refine.ls_R_factor_R_work 0.25802 _refine.ls_R_factor_R_free 0.29527 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free 5.1 _refine.ls_number_reflns_R_free 879 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.correlation_coeff_Fo_to_Fc 0.893 _refine.correlation_coeff_Fo_to_Fc_free 0.869 _refine.B_iso_mean 68.868 _refine.aniso_B[1][1] -0.33 _refine.aniso_B[2][2] 0.65 _refine.aniso_B[3][3] -0.32 _refine.aniso_B[1][2] -0.00 _refine.aniso_B[1][3] -0.00 _refine.aniso_B[2][3] 0.00 _refine.solvent_model_details MASK _refine.solvent_model_param_ksol ? _refine.solvent_model_param_bsol ? _refine.pdbx_solvent_vdw_probe_radii 1.20 _refine.pdbx_solvent_ion_probe_radii 0.80 _refine.pdbx_solvent_shrinkage_radii 0.80 _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.details 'HYDROGENS HAVE BEEN USED IF PRESENT IN THE INPUT' _refine.pdbx_starting_model 2EQB _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_stereochemistry_target_values 'MAXIMUM LIKELIHOOD' _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details RANDOM _refine.pdbx_overall_ESU_R 0.597 _refine.pdbx_overall_ESU_R_Free 0.377 _refine.overall_SU_ML 0.337 _refine.pdbx_overall_phase_error ? _refine.overall_SU_B 38.788 _refine.overall_SU_R_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 2823 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 28 _refine_hist.number_atoms_solvent 16 _refine_hist.number_atoms_total 2867 _refine_hist.d_res_high 2.90 _refine_hist.d_res_low 85.44 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function r_bond_refined_d 0.012 0.020 ? 2876 'X-RAY DIFFRACTION' ? r_bond_other_d ? ? ? ? 'X-RAY DIFFRACTION' ? r_angle_refined_deg 1.613 1.985 ? 3867 'X-RAY DIFFRACTION' ? r_angle_other_deg ? ? ? ? 'X-RAY DIFFRACTION' ? r_dihedral_angle_1_deg 7.092 5.000 ? 344 'X-RAY DIFFRACTION' ? r_dihedral_angle_2_deg 36.958 25.649 ? 154 'X-RAY DIFFRACTION' ? r_dihedral_angle_3_deg 22.267 15.000 ? 576 'X-RAY DIFFRACTION' ? r_dihedral_angle_4_deg 22.777 15.000 ? 22 'X-RAY DIFFRACTION' ? r_chiral_restr 0.111 0.200 ? 442 'X-RAY DIFFRACTION' ? r_gen_planes_refined 0.005 0.020 ? 2117 'X-RAY DIFFRACTION' ? r_gen_planes_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_nbd_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_nbd_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_nbtor_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_nbtor_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_xyhbond_nbd_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_xyhbond_nbd_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_metal_ion_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_metal_ion_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_vdw_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_vdw_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_hbond_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_hbond_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_metal_ion_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_metal_ion_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_mcbond_it ? ? ? ? 'X-RAY DIFFRACTION' ? r_mcbond_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_mcangle_it ? ? ? ? 'X-RAY DIFFRACTION' ? r_mcangle_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_scbond_it ? ? ? ? 'X-RAY DIFFRACTION' ? r_scbond_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_scangle_it ? ? ? ? 'X-RAY DIFFRACTION' ? r_scangle_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_long_range_B_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_long_range_B_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_rigid_bond_restr ? ? ? ? 'X-RAY DIFFRACTION' ? r_sphericity_free ? ? ? ? 'X-RAY DIFFRACTION' ? r_sphericity_bonded ? ? ? ? 'X-RAY DIFFRACTION' ? # _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_ls_shell.pdbx_total_number_of_bins_used 20 _refine_ls_shell.d_res_high 2.900 _refine_ls_shell.d_res_low 2.976 _refine_ls_shell.number_reflns_R_work 385 _refine_ls_shell.R_factor_R_work 0.326 _refine_ls_shell.percent_reflns_obs 29.73 _refine_ls_shell.R_factor_R_free 0.512 _refine_ls_shell.R_factor_R_free_error ? _refine_ls_shell.percent_reflns_R_free ? _refine_ls_shell.number_reflns_R_free 22 _refine_ls_shell.number_reflns_all ? _refine_ls_shell.R_factor_all ? _refine_ls_shell.R_factor_obs ? _refine_ls_shell.number_reflns_obs ? # _struct.entry_id 4ZDW _struct.title 'Crystal structure of the Rab GTPase Sec4p mutant - S29V in complex with Sec2p and GDP' _struct.pdbx_model_details ? _struct.pdbx_formula_weight ? _struct.pdbx_formula_weight_method ? _struct.pdbx_model_type_details ? _struct.pdbx_CASP_flag ? # _struct_keywords.entry_id 4ZDW _struct_keywords.text 'GTPase, GDP bound, Rab Sec4p, Sec2p, GTP binding protein' _struct_keywords.pdbx_keywords 'GTP binding protein' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 2 ? D N N 3 ? E N N 4 ? F N N 4 ? # _struct_biol.details 'Trimer according to Gel filtration' _struct_biol.id 1 _struct_biol.pdbx_parent_biol_id ? _struct_biol.pdbx_formula_weight ? _struct_biol.pdbx_formula_weight_method ? _struct_biol.pdbx_aggregation_state ? _struct_biol.pdbx_assembly_method ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 AA1 LYS A 16 ? VAL A 24 ? LYS A 33 VAL A 41 1 ? 9 HELX_P HELX_P2 AA2 PHE A 65 ? ALA A 76 ? PHE A 82 ALA A 93 1 ? 12 HELX_P HELX_P3 AA3 ASP A 87 ? ASN A 93 ? ASP A 104 ASN A 110 1 ? 7 HELX_P HELX_P4 AA4 ASN A 93 ? ALA A 105 ? ASN A 110 ALA A 122 1 ? 13 HELX_P HELX_P5 AA5 THR A 126 ? GLY A 138 ? THR A 143 GLY A 155 1 ? 13 HELX_P HELX_P6 AA6 ASN A 151 ? ASP A 168 ? ASN A 168 ASP A 185 1 ? 18 HELX_P HELX_P7 AA7 ASN B 2 ? GLU B 90 ? ASN B 51 GLU B 139 1 ? 89 HELX_P HELX_P8 AA8 ASN C 2 ? ARG C 89 ? ASN C 51 ARG C 138 1 ? 88 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # _struct_mon_prot_cis.pdbx_id 1 _struct_mon_prot_cis.label_comp_id SER _struct_mon_prot_cis.label_seq_id 1 _struct_mon_prot_cis.label_asym_id B _struct_mon_prot_cis.label_alt_id . _struct_mon_prot_cis.pdbx_PDB_ins_code ? _struct_mon_prot_cis.auth_comp_id SER _struct_mon_prot_cis.auth_seq_id 50 _struct_mon_prot_cis.auth_asym_id B _struct_mon_prot_cis.pdbx_label_comp_id_2 ASN _struct_mon_prot_cis.pdbx_label_seq_id_2 2 _struct_mon_prot_cis.pdbx_label_asym_id_2 B _struct_mon_prot_cis.pdbx_PDB_ins_code_2 ? _struct_mon_prot_cis.pdbx_auth_comp_id_2 ASN _struct_mon_prot_cis.pdbx_auth_seq_id_2 51 _struct_mon_prot_cis.pdbx_auth_asym_id_2 B _struct_mon_prot_cis.pdbx_PDB_model_num 1 _struct_mon_prot_cis.pdbx_omega_angle -9.06 # _struct_sheet.id AA1 _struct_sheet.type ? _struct_sheet.number_strands 6 _struct_sheet.details ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense AA1 1 2 ? anti-parallel AA1 2 3 ? parallel AA1 3 4 ? parallel AA1 4 5 ? parallel AA1 5 6 ? parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id AA1 1 ILE A 38 ? LYS A 41 ? ILE A 55 LYS A 58 AA1 2 LEU A 56 ? THR A 59 ? LEU A 73 THR A 76 AA1 3 ILE A 6 ? ILE A 9 ? ILE A 23 ILE A 26 AA1 4 GLY A 78 ? ASP A 84 ? GLY A 95 ASP A 101 AA1 5 GLN A 110 ? ASN A 116 ? GLN A 127 ASN A 133 AA1 6 GLU A 143 ? SER A 144 ? GLU A 160 SER A 161 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id AA1 1 2 N LYS A 41 ? N LYS A 58 O LEU A 56 ? O LEU A 73 AA1 2 3 O TRP A 57 ? O TRP A 74 N ILE A 6 ? N ILE A 23 AA1 3 4 N ILE A 9 ? N ILE A 26 O VAL A 82 ? O VAL A 99 AA1 4 5 N TYR A 83 ? N TYR A 100 O ASN A 116 ? O ASN A 133 AA1 5 6 N GLY A 115 ? N GLY A 132 O SER A 144 ? O SER A 161 # _struct_site.id AC1 _struct_site.pdbx_evidence_code Software _struct_site.pdbx_auth_asym_id A _struct_site.pdbx_auth_comp_id GDP _struct_site.pdbx_auth_seq_id 201 _struct_site.pdbx_auth_ins_code ? _struct_site.pdbx_num_residues 16 _struct_site.details 'binding site for residue GDP A 201' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 16 ASP A 11 ? ASP A 28 . ? 1_555 ? 2 AC1 16 VAL A 12 ? VAL A 29 . ? 1_555 ? 3 AC1 16 GLY A 13 ? GLY A 30 . ? 1_555 ? 4 AC1 16 GLY A 15 ? GLY A 32 . ? 1_555 ? 5 AC1 16 LYS A 16 ? LYS A 33 . ? 1_555 ? 6 AC1 16 SER A 17 ? SER A 34 . ? 1_555 ? 7 AC1 16 CYS A 18 ? CYS A 35 . ? 1_555 ? 8 AC1 16 ASN A 116 ? ASN A 133 . ? 1_555 ? 9 AC1 16 LYS A 117 ? LYS A 134 . ? 1_555 ? 10 AC1 16 ASP A 119 ? ASP A 136 . ? 1_555 ? 11 AC1 16 MET A 120 ? MET A 137 . ? 1_555 ? 12 AC1 16 SER A 145 ? SER A 162 . ? 1_555 ? 13 AC1 16 ALA A 146 ? ALA A 163 . ? 1_555 ? 14 AC1 16 LYS A 147 ? LYS A 164 . ? 1_555 ? 15 AC1 16 HOH E . ? HOH A 303 . ? 1_555 ? 16 AC1 16 HOH E . ? HOH A 306 . ? 1_555 ? # _atom_sites.entry_id 4ZDW _atom_sites.fract_transf_matrix[1][1] 0.008554 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] -0.000000 _atom_sites.fract_transf_matrix[2][2] 0.008384 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] -0.000000 _atom_sites.fract_transf_matrix[3][3] 0.008139 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C N O P S # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 SER 1 18 ? ? ? A . n A 1 2 SER 2 19 19 SER SER A . n A 1 3 ILE 3 20 20 ILE ILE A . n A 1 4 MET 4 21 21 MET MET A . n A 1 5 LYS 5 22 22 LYS LYS A . n A 1 6 ILE 6 23 23 ILE ILE A . n A 1 7 LEU 7 24 24 LEU LEU A . n A 1 8 LEU 8 25 25 LEU LEU A . n A 1 9 ILE 9 26 26 ILE ILE A . n A 1 10 GLY 10 27 27 GLY GLY A . n A 1 11 ASP 11 28 28 ASP ASP A . n A 1 12 VAL 12 29 29 VAL VAL A . n A 1 13 GLY 13 30 30 GLY GLY A . n A 1 14 VAL 14 31 31 VAL VAL A . n A 1 15 GLY 15 32 32 GLY GLY A . n A 1 16 LYS 16 33 33 LYS LYS A . n A 1 17 SER 17 34 34 SER SER A . n A 1 18 CYS 18 35 35 CYS CYS A . n A 1 19 LEU 19 36 36 LEU LEU A . n A 1 20 LEU 20 37 37 LEU LEU A . n A 1 21 VAL 21 38 38 VAL VAL A . n A 1 22 ARG 22 39 39 ARG ARG A . n A 1 23 PHE 23 40 40 PHE PHE A . n A 1 24 VAL 24 41 41 VAL VAL A . n A 1 25 GLU 25 42 42 GLU GLU A . n A 1 26 ASP 26 43 43 ASP ASP A . n A 1 27 LYS 27 44 44 LYS LYS A . n A 1 28 PHE 28 45 45 PHE PHE A . n A 1 29 ASN 29 46 46 ASN ASN A . n A 1 30 PRO 30 47 47 PRO PRO A . n A 1 31 SER 31 48 48 SER SER A . n A 1 32 PHE 32 49 49 PHE PHE A . n A 1 33 ILE 33 50 50 ILE ILE A . n A 1 34 THR 34 51 51 THR THR A . n A 1 35 THR 35 52 52 THR THR A . n A 1 36 ILE 36 53 53 ILE ILE A . n A 1 37 GLY 37 54 54 GLY GLY A . n A 1 38 ILE 38 55 55 ILE ILE A . n A 1 39 ASP 39 56 56 ASP ASP A . n A 1 40 PHE 40 57 57 PHE PHE A . n A 1 41 LYS 41 58 58 LYS LYS A . n A 1 42 ILE 42 59 59 ILE ILE A . n A 1 43 LYS 43 60 60 LYS LYS A . n A 1 44 THR 44 61 61 THR THR A . n A 1 45 VAL 45 62 62 VAL VAL A . n A 1 46 ASP 46 63 63 ASP ASP A . n A 1 47 ILE 47 64 64 ILE ILE A . n A 1 48 ASN 48 65 65 ASN ASN A . n A 1 49 GLY 49 66 ? ? ? A . n A 1 50 LYS 50 67 ? ? ? A . n A 1 51 LYS 51 68 ? ? ? A . n A 1 52 VAL 52 69 69 VAL VAL A . n A 1 53 LYS 53 70 70 LYS LYS A . n A 1 54 LEU 54 71 71 LEU LEU A . n A 1 55 GLN 55 72 72 GLN GLN A . n A 1 56 LEU 56 73 73 LEU LEU A . n A 1 57 TRP 57 74 74 TRP TRP A . n A 1 58 ASP 58 75 75 ASP ASP A . n A 1 59 THR 59 76 76 THR THR A . n A 1 60 ALA 60 77 77 ALA ALA A . n A 1 61 GLY 61 78 78 GLY GLY A . n A 1 62 GLN 62 79 79 GLN GLN A . n A 1 63 GLU 63 80 80 GLU GLU A . n A 1 64 ARG 64 81 81 ARG ARG A . n A 1 65 PHE 65 82 82 PHE PHE A . n A 1 66 ARG 66 83 83 ARG ARG A . n A 1 67 THR 67 84 84 THR THR A . n A 1 68 ILE 68 85 85 ILE ILE A . n A 1 69 THR 69 86 86 THR THR A . n A 1 70 THR 70 87 87 THR THR A . n A 1 71 ALA 71 88 88 ALA ALA A . n A 1 72 TYR 72 89 89 TYR TYR A . n A 1 73 TYR 73 90 90 TYR TYR A . n A 1 74 ARG 74 91 91 ARG ARG A . n A 1 75 GLY 75 92 92 GLY GLY A . n A 1 76 ALA 76 93 93 ALA ALA A . n A 1 77 MET 77 94 94 MET MET A . n A 1 78 GLY 78 95 95 GLY GLY A . n A 1 79 ILE 79 96 96 ILE ILE A . n A 1 80 ILE 80 97 97 ILE ILE A . n A 1 81 LEU 81 98 98 LEU LEU A . n A 1 82 VAL 82 99 99 VAL VAL A . n A 1 83 TYR 83 100 100 TYR TYR A . n A 1 84 ASP 84 101 101 ASP ASP A . n A 1 85 VAL 85 102 102 VAL VAL A . n A 1 86 THR 86 103 103 THR THR A . n A 1 87 ASP 87 104 104 ASP ASP A . n A 1 88 GLU 88 105 105 GLU ALA A . n A 1 89 ARG 89 106 106 ARG ARG A . n A 1 90 THR 90 107 107 THR THR A . n A 1 91 PHE 91 108 108 PHE ALA A . n A 1 92 THR 92 109 109 THR THR A . n A 1 93 ASN 93 110 110 ASN ASN A . n A 1 94 ILE 94 111 111 ILE ILE A . n A 1 95 LYS 95 112 112 LYS LYS A . n A 1 96 GLN 96 113 113 GLN GLN A . n A 1 97 TRP 97 114 114 TRP TRP A . n A 1 98 PHE 98 115 115 PHE PHE A . n A 1 99 LYS 99 116 116 LYS LYS A . n A 1 100 THR 100 117 117 THR THR A . n A 1 101 VAL 101 118 118 VAL VAL A . n A 1 102 ASN 102 119 119 ASN ASN A . n A 1 103 GLU 103 120 120 GLU GLU A . n A 1 104 HIS 104 121 121 HIS HIS A . n A 1 105 ALA 105 122 122 ALA ALA A . n A 1 106 ASN 106 123 123 ASN ASN A . n A 1 107 ASP 107 124 124 ASP ASP A . n A 1 108 GLU 108 125 125 GLU GLU A . n A 1 109 ALA 109 126 126 ALA ALA A . n A 1 110 GLN 110 127 127 GLN GLN A . n A 1 111 LEU 111 128 128 LEU LEU A . n A 1 112 LEU 112 129 129 LEU LEU A . n A 1 113 LEU 113 130 130 LEU LEU A . n A 1 114 VAL 114 131 131 VAL VAL A . n A 1 115 GLY 115 132 132 GLY GLY A . n A 1 116 ASN 116 133 133 ASN ASN A . n A 1 117 LYS 117 134 134 LYS LYS A . n A 1 118 SER 118 135 135 SER SER A . n A 1 119 ASP 119 136 136 ASP ASP A . n A 1 120 MET 120 137 137 MET MET A . n A 1 121 GLU 121 138 138 GLU GLU A . n A 1 122 THR 122 139 139 THR THR A . n A 1 123 ARG 123 140 140 ARG ARG A . n A 1 124 VAL 124 141 141 VAL VAL A . n A 1 125 VAL 125 142 142 VAL VAL A . n A 1 126 THR 126 143 143 THR THR A . n A 1 127 ALA 127 144 144 ALA ALA A . n A 1 128 ASP 128 145 145 ASP ASP A . n A 1 129 GLN 129 146 146 GLN GLN A . n A 1 130 GLY 130 147 147 GLY GLY A . n A 1 131 GLU 131 148 148 GLU GLU A . n A 1 132 ALA 132 149 149 ALA ALA A . n A 1 133 LEU 133 150 150 LEU LEU A . n A 1 134 ALA 134 151 151 ALA ALA A . n A 1 135 LYS 135 152 152 LYS LYS A . n A 1 136 GLU 136 153 153 GLU GLU A . n A 1 137 LEU 137 154 154 LEU LEU A . n A 1 138 GLY 138 155 155 GLY GLY A . n A 1 139 ILE 139 156 156 ILE ILE A . n A 1 140 PRO 140 157 157 PRO PRO A . n A 1 141 PHE 141 158 158 PHE PHE A . n A 1 142 ILE 142 159 159 ILE ILE A . n A 1 143 GLU 143 160 160 GLU GLU A . n A 1 144 SER 144 161 161 SER SER A . n A 1 145 SER 145 162 162 SER SER A . n A 1 146 ALA 146 163 163 ALA ALA A . n A 1 147 LYS 147 164 164 LYS LYS A . n A 1 148 ASN 148 165 165 ASN ASN A . n A 1 149 ASP 149 166 166 ASP ASP A . n A 1 150 ASP 150 167 167 ASP ASP A . n A 1 151 ASN 151 168 168 ASN ASN A . n A 1 152 VAL 152 169 169 VAL VAL A . n A 1 153 ASN 153 170 170 ASN ASN A . n A 1 154 GLU 154 171 171 GLU GLU A . n A 1 155 ILE 155 172 172 ILE ILE A . n A 1 156 PHE 156 173 173 PHE PHE A . n A 1 157 PHE 157 174 174 PHE PHE A . n A 1 158 THR 158 175 175 THR THR A . n A 1 159 LEU 159 176 176 LEU LEU A . n A 1 160 ALA 160 177 177 ALA ALA A . n A 1 161 LYS 161 178 178 LYS LYS A . n A 1 162 LEU 162 179 179 LEU LEU A . n A 1 163 ILE 163 180 180 ILE ILE A . n A 1 164 GLN 164 181 181 GLN GLN A . n A 1 165 GLU 165 182 182 GLU GLU A . n A 1 166 LYS 166 183 183 LYS LYS A . n A 1 167 ILE 167 184 184 ILE ILE A . n A 1 168 ASP 168 185 185 ASP ASP A . n A 1 169 SER 169 186 186 SER SER A . n A 1 170 ASN 170 187 187 ASN ASN A . n B 2 1 SER 1 50 50 SER ALA B . n B 2 2 ASN 2 51 51 ASN ASN B . n B 2 3 TYR 3 52 52 TYR TYR B . n B 2 4 ASN 4 53 53 ASN ASN B . n B 2 5 GLN 5 54 54 GLN GLN B . n B 2 6 LEU 6 55 55 LEU LEU B . n B 2 7 LYS 7 56 56 LYS LYS B . n B 2 8 GLU 8 57 57 GLU GLU B . n B 2 9 ASP 9 58 58 ASP ASP B . n B 2 10 TYR 10 59 59 TYR TYR B . n B 2 11 ASN 11 60 60 ASN ASN B . n B 2 12 THR 12 61 61 THR THR B . n B 2 13 LEU 13 62 62 LEU LEU B . n B 2 14 LYS 14 63 63 LYS LYS B . n B 2 15 ARG 15 64 64 ARG ARG B . n B 2 16 GLU 16 65 65 GLU GLU B . n B 2 17 LEU 17 66 66 LEU LEU B . n B 2 18 SER 18 67 67 SER SER B . n B 2 19 ASP 19 68 68 ASP ASP B . n B 2 20 ARG 20 69 69 ARG ARG B . n B 2 21 ASP 21 70 70 ASP ASP B . n B 2 22 ASP 22 71 71 ASP ASP B . n B 2 23 GLU 23 72 72 GLU GLU B . n B 2 24 VAL 24 73 73 VAL VAL B . n B 2 25 LYS 25 74 74 LYS LYS B . n B 2 26 ARG 26 75 75 ARG ARG B . n B 2 27 LEU 27 76 76 LEU LEU B . n B 2 28 ARG 28 77 77 ARG ARG B . n B 2 29 GLU 29 78 78 GLU GLU B . n B 2 30 ASP 30 79 79 ASP ASP B . n B 2 31 ILE 31 80 80 ILE ILE B . n B 2 32 ALA 32 81 81 ALA ALA B . n B 2 33 LYS 33 82 82 LYS LYS B . n B 2 34 GLU 34 83 83 GLU GLU B . n B 2 35 ASN 35 84 84 ASN ASN B . n B 2 36 GLU 36 85 85 GLU GLU B . n B 2 37 LEU 37 86 86 LEU LEU B . n B 2 38 ARG 38 87 87 ARG ARG B . n B 2 39 THR 39 88 88 THR THR B . n B 2 40 LYS 40 89 89 LYS LYS B . n B 2 41 ALA 41 90 90 ALA ALA B . n B 2 42 GLU 42 91 91 GLU GLU B . n B 2 43 GLU 43 92 92 GLU GLU B . n B 2 44 GLU 44 93 93 GLU GLU B . n B 2 45 ALA 45 94 94 ALA ALA B . n B 2 46 ASP 46 95 95 ASP ASP B . n B 2 47 LYS 47 96 96 LYS LYS B . n B 2 48 LEU 48 97 97 LEU LEU B . n B 2 49 ASN 49 98 98 ASN ASN B . n B 2 50 LYS 50 99 99 LYS LYS B . n B 2 51 GLU 51 100 100 GLU GLU B . n B 2 52 VAL 52 101 101 VAL VAL B . n B 2 53 GLU 53 102 102 GLU GLU B . n B 2 54 ASP 54 103 103 ASP ASP B . n B 2 55 LEU 55 104 104 LEU LEU B . n B 2 56 THR 56 105 105 THR THR B . n B 2 57 ALA 57 106 106 ALA ALA B . n B 2 58 SER 58 107 107 SER SER B . n B 2 59 LEU 59 108 108 LEU LEU B . n B 2 60 PHE 60 109 109 PHE PHE B . n B 2 61 ASP 61 110 110 ASP ASP B . n B 2 62 GLU 62 111 111 GLU GLU B . n B 2 63 ALA 63 112 112 ALA ALA B . n B 2 64 ASN 64 113 113 ASN ASN B . n B 2 65 ASN 65 114 114 ASN ASN B . n B 2 66 MET 66 115 115 MET MET B . n B 2 67 VAL 67 116 116 VAL VAL B . n B 2 68 ALA 68 117 117 ALA ALA B . n B 2 69 ASP 69 118 118 ASP ASP B . n B 2 70 ALA 70 119 119 ALA ALA B . n B 2 71 ARG 71 120 120 ARG ARG B . n B 2 72 LYS 72 121 121 LYS LYS B . n B 2 73 GLU 73 122 122 GLU GLU B . n B 2 74 LYS 74 123 123 LYS LYS B . n B 2 75 TYR 75 124 124 TYR TYR B . n B 2 76 ALA 76 125 125 ALA ALA B . n B 2 77 ILE 77 126 126 ILE ILE B . n B 2 78 GLU 78 127 127 GLU GLU B . n B 2 79 ILE 79 128 128 ILE ILE B . n B 2 80 LEU 80 129 129 LEU LEU B . n B 2 81 ASN 81 130 130 ASN ASN B . n B 2 82 LYS 82 131 131 LYS LYS B . n B 2 83 ARG 83 132 132 ARG ARG B . n B 2 84 LEU 84 133 133 LEU LEU B . n B 2 85 THR 85 134 134 THR THR B . n B 2 86 GLU 86 135 135 GLU GLU B . n B 2 87 GLN 87 136 136 GLN GLN B . n B 2 88 LEU 88 137 137 LEU LEU B . n B 2 89 ARG 89 138 138 ARG ARG B . n B 2 90 GLU 90 139 139 GLU GLU B . n B 2 91 LYS 91 140 140 LYS LYS B . n B 2 92 ASP 92 141 ? ? ? B . n B 2 93 THR 93 142 ? ? ? B . n C 2 1 SER 1 50 50 SER ALA C . n C 2 2 ASN 2 51 51 ASN ASN C . n C 2 3 TYR 3 52 52 TYR TYR C . n C 2 4 ASN 4 53 53 ASN ASN C . n C 2 5 GLN 5 54 54 GLN GLN C . n C 2 6 LEU 6 55 55 LEU LEU C . n C 2 7 LYS 7 56 56 LYS LYS C . n C 2 8 GLU 8 57 57 GLU GLU C . n C 2 9 ASP 9 58 58 ASP ASP C . n C 2 10 TYR 10 59 59 TYR TYR C . n C 2 11 ASN 11 60 60 ASN ASN C . n C 2 12 THR 12 61 61 THR THR C . n C 2 13 LEU 13 62 62 LEU LEU C . n C 2 14 LYS 14 63 63 LYS LYS C . n C 2 15 ARG 15 64 64 ARG ARG C . n C 2 16 GLU 16 65 65 GLU GLU C . n C 2 17 LEU 17 66 66 LEU LEU C . n C 2 18 SER 18 67 67 SER SER C . n C 2 19 ASP 19 68 68 ASP ASP C . n C 2 20 ARG 20 69 69 ARG ARG C . n C 2 21 ASP 21 70 70 ASP ASP C . n C 2 22 ASP 22 71 71 ASP ASP C . n C 2 23 GLU 23 72 72 GLU GLU C . n C 2 24 VAL 24 73 73 VAL VAL C . n C 2 25 LYS 25 74 74 LYS LYS C . n C 2 26 ARG 26 75 75 ARG ARG C . n C 2 27 LEU 27 76 76 LEU LEU C . n C 2 28 ARG 28 77 77 ARG ARG C . n C 2 29 GLU 29 78 78 GLU GLU C . n C 2 30 ASP 30 79 79 ASP ASP C . n C 2 31 ILE 31 80 80 ILE ILE C . n C 2 32 ALA 32 81 81 ALA ALA C . n C 2 33 LYS 33 82 82 LYS LYS C . n C 2 34 GLU 34 83 83 GLU GLU C . n C 2 35 ASN 35 84 84 ASN ASN C . n C 2 36 GLU 36 85 85 GLU GLU C . n C 2 37 LEU 37 86 86 LEU LEU C . n C 2 38 ARG 38 87 87 ARG ARG C . n C 2 39 THR 39 88 88 THR THR C . n C 2 40 LYS 40 89 89 LYS LYS C . n C 2 41 ALA 41 90 90 ALA ALA C . n C 2 42 GLU 42 91 91 GLU GLU C . n C 2 43 GLU 43 92 92 GLU GLU C . n C 2 44 GLU 44 93 93 GLU GLU C . n C 2 45 ALA 45 94 94 ALA ALA C . n C 2 46 ASP 46 95 95 ASP ASP C . n C 2 47 LYS 47 96 96 LYS LYS C . n C 2 48 LEU 48 97 97 LEU LEU C . n C 2 49 ASN 49 98 98 ASN ASN C . n C 2 50 LYS 50 99 99 LYS LYS C . n C 2 51 GLU 51 100 100 GLU GLU C . n C 2 52 VAL 52 101 101 VAL VAL C . n C 2 53 GLU 53 102 102 GLU GLU C . n C 2 54 ASP 54 103 103 ASP ASP C . n C 2 55 LEU 55 104 104 LEU LEU C . n C 2 56 THR 56 105 105 THR THR C . n C 2 57 ALA 57 106 106 ALA ALA C . n C 2 58 SER 58 107 107 SER SER C . n C 2 59 LEU 59 108 108 LEU LEU C . n C 2 60 PHE 60 109 109 PHE PHE C . n C 2 61 ASP 61 110 110 ASP ASP C . n C 2 62 GLU 62 111 111 GLU GLU C . n C 2 63 ALA 63 112 112 ALA ALA C . n C 2 64 ASN 64 113 113 ASN ASN C . n C 2 65 ASN 65 114 114 ASN ASN C . n C 2 66 MET 66 115 115 MET MET C . n C 2 67 VAL 67 116 116 VAL VAL C . n C 2 68 ALA 68 117 117 ALA ALA C . n C 2 69 ASP 69 118 118 ASP ASP C . n C 2 70 ALA 70 119 119 ALA ALA C . n C 2 71 ARG 71 120 120 ARG ARG C . n C 2 72 LYS 72 121 121 LYS LYS C . n C 2 73 GLU 73 122 122 GLU GLU C . n C 2 74 LYS 74 123 123 LYS LYS C . n C 2 75 TYR 75 124 124 TYR TYR C . n C 2 76 ALA 76 125 125 ALA ALA C . n C 2 77 ILE 77 126 126 ILE ILE C . n C 2 78 GLU 78 127 127 GLU GLU C . n C 2 79 ILE 79 128 128 ILE ILE C . n C 2 80 LEU 80 129 129 LEU LEU C . n C 2 81 ASN 81 130 130 ASN ASN C . n C 2 82 LYS 82 131 131 LYS LYS C . n C 2 83 ARG 83 132 132 ARG ARG C . n C 2 84 LEU 84 133 133 LEU LEU C . n C 2 85 THR 85 134 134 THR THR C . n C 2 86 GLU 86 135 135 GLU GLU C . n C 2 87 GLN 87 136 136 GLN GLN C . n C 2 88 LEU 88 137 137 LEU LEU C . n C 2 89 ARG 89 138 138 ARG ARG C . n C 2 90 GLU 90 139 139 GLU GLU C . n C 2 91 LYS 91 140 140 LYS LYS C . n C 2 92 ASP 92 141 ? ? ? C . n C 2 93 THR 93 142 ? ? ? C . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code D 3 GDP 1 201 201 GDP GDP A . E 4 HOH 1 301 13 HOH HOH A . E 4 HOH 2 302 42 HOH HOH A . E 4 HOH 3 303 21 HOH HOH A . E 4 HOH 4 304 32 HOH HOH A . E 4 HOH 5 305 9 HOH HOH A . E 4 HOH 6 306 41 HOH HOH A . E 4 HOH 7 307 17 HOH HOH A . E 4 HOH 8 308 44 HOH HOH A . E 4 HOH 9 309 3 HOH HOH A . E 4 HOH 10 310 15 HOH HOH A . F 4 HOH 1 201 11 HOH HOH B . F 4 HOH 2 202 1 HOH HOH B . F 4 HOH 3 203 30 HOH HOH B . F 4 HOH 4 204 22 HOH HOH B . F 4 HOH 5 205 46 HOH HOH B . F 4 HOH 6 206 45 HOH HOH B . # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details trimeric _pdbx_struct_assembly.oligomeric_count 3 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 1 'ABSA (A^2)' 7380 ? 1 MORE -62 ? 1 'SSA (A^2)' 20200 ? # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2015-10-14 2 'Structure model' 1 1 2017-09-20 3 'Structure model' 1 2 2017-11-01 4 'Structure model' 1 3 2019-12-25 5 'Structure model' 1 4 2023-09-27 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Author supporting evidence' 2 2 'Structure model' 'Derived calculations' 3 3 'Structure model' 'Author supporting evidence' 4 4 'Structure model' 'Author supporting evidence' 5 5 'Structure model' 'Data collection' 6 5 'Structure model' 'Database references' 7 5 'Structure model' 'Refinement description' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 2 'Structure model' pdbx_audit_support 2 2 'Structure model' pdbx_struct_oper_list 3 3 'Structure model' pdbx_struct_assembly_auth_evidence 4 4 'Structure model' pdbx_audit_support 5 5 'Structure model' chem_comp_atom 6 5 'Structure model' chem_comp_bond 7 5 'Structure model' database_2 8 5 'Structure model' pdbx_initial_refinement_model # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 2 'Structure model' '_pdbx_audit_support.funding_organization' 2 2 'Structure model' '_pdbx_struct_oper_list.symmetry_operation' 3 4 'Structure model' '_pdbx_audit_support.funding_organization' 4 5 'Structure model' '_database_2.pdbx_DOI' 5 5 'Structure model' '_database_2.pdbx_database_accession' # loop_ _pdbx_refine_tls.pdbx_refine_id _pdbx_refine_tls.id _pdbx_refine_tls.details _pdbx_refine_tls.method _pdbx_refine_tls.origin_x _pdbx_refine_tls.origin_y _pdbx_refine_tls.origin_z _pdbx_refine_tls.T[1][1] _pdbx_refine_tls.T[2][2] _pdbx_refine_tls.T[3][3] _pdbx_refine_tls.T[1][2] _pdbx_refine_tls.T[1][3] _pdbx_refine_tls.T[2][3] _pdbx_refine_tls.L[1][1] _pdbx_refine_tls.L[2][2] _pdbx_refine_tls.L[3][3] _pdbx_refine_tls.L[1][2] _pdbx_refine_tls.L[1][3] _pdbx_refine_tls.L[2][3] _pdbx_refine_tls.S[1][1] _pdbx_refine_tls.S[1][2] _pdbx_refine_tls.S[1][3] _pdbx_refine_tls.S[2][1] _pdbx_refine_tls.S[2][2] _pdbx_refine_tls.S[2][3] _pdbx_refine_tls.S[3][1] _pdbx_refine_tls.S[3][2] _pdbx_refine_tls.S[3][3] 'X-RAY DIFFRACTION' 1 ? refined -25.7645 -22.6123 -18.6267 0.2574 0.6052 0.3454 0.1060 0.0837 -0.1057 4.0513 1.8347 4.5812 -0.3474 -1.7720 0.1746 0.1013 0.6896 -0.1678 -0.4318 0.1287 -0.5856 -0.1002 0.5966 -0.2300 'X-RAY DIFFRACTION' 2 ? refined -27.6483 -27.9407 11.6846 0.1001 0.0895 0.0506 0.0434 -0.0214 0.0443 10.2794 2.2380 12.2976 -4.3614 10.9952 -4.8347 0.5532 -0.2945 -0.4071 -0.3713 0.0047 0.1604 0.6898 -0.3482 -0.5579 'X-RAY DIFFRACTION' 3 ? refined -25.9688 -22.8609 12.6412 0.1546 0.2258 0.1880 0.0831 -0.0632 0.0072 6.0110 2.3766 6.8575 -3.6583 6.2289 -3.9382 -0.0227 0.3577 0.6335 -0.0851 -0.3983 -0.3099 0.0740 0.4416 0.4211 # loop_ _pdbx_refine_tls_group.pdbx_refine_id _pdbx_refine_tls_group.id _pdbx_refine_tls_group.refine_tls_id _pdbx_refine_tls_group.beg_auth_asym_id _pdbx_refine_tls_group.beg_auth_seq_id _pdbx_refine_tls_group.beg_label_asym_id _pdbx_refine_tls_group.beg_label_seq_id _pdbx_refine_tls_group.end_auth_asym_id _pdbx_refine_tls_group.end_auth_seq_id _pdbx_refine_tls_group.end_label_asym_id _pdbx_refine_tls_group.end_label_seq_id _pdbx_refine_tls_group.selection _pdbx_refine_tls_group.selection_details 'X-RAY DIFFRACTION' 1 1 A 20 ? ? A 186 ? ? ? ? 'X-RAY DIFFRACTION' 2 2 B 52 ? ? B 139 ? ? ? ? 'X-RAY DIFFRACTION' 3 3 C 52 ? ? C 139 ? ? ? ? # loop_ _software.citation_id _software.classification _software.compiler_name _software.compiler_version _software.contact_author _software.contact_author_email _software.date _software.description _software.dependencies _software.hardware _software.language _software.location _software.mods _software.name _software.os _software.os_version _software.type _software.version _software.pdbx_ordinal ? refinement ? ? ? ? ? ? ? ? ? ? ? REFMAC ? ? ? 5.6.0117 1 ? 'data reduction' ? ? ? ? ? ? ? ? ? ? ? MOSFLM ? ? ? . 2 ? 'data scaling' ? ? ? ? ? ? ? ? ? ? ? SCALA ? ? ? . 3 ? phasing ? ? ? ? ? ? ? ? ? ? ? PHASER ? ? ? . 4 # loop_ _pdbx_validate_close_contact.id _pdbx_validate_close_contact.PDB_model_num _pdbx_validate_close_contact.auth_atom_id_1 _pdbx_validate_close_contact.auth_asym_id_1 _pdbx_validate_close_contact.auth_comp_id_1 _pdbx_validate_close_contact.auth_seq_id_1 _pdbx_validate_close_contact.PDB_ins_code_1 _pdbx_validate_close_contact.label_alt_id_1 _pdbx_validate_close_contact.auth_atom_id_2 _pdbx_validate_close_contact.auth_asym_id_2 _pdbx_validate_close_contact.auth_comp_id_2 _pdbx_validate_close_contact.auth_seq_id_2 _pdbx_validate_close_contact.PDB_ins_code_2 _pdbx_validate_close_contact.label_alt_id_2 _pdbx_validate_close_contact.dist 1 1 O A GLN 79 ? ? O A HOH 301 ? ? 2.07 2 1 OD1 A ASP 56 ? ? O A HOH 302 ? ? 2.08 3 1 O C ASP 103 ? ? OG C SER 107 ? ? 2.16 # _pdbx_validate_rmsd_bond.id 1 _pdbx_validate_rmsd_bond.PDB_model_num 1 _pdbx_validate_rmsd_bond.auth_atom_id_1 CE2 _pdbx_validate_rmsd_bond.auth_asym_id_1 A _pdbx_validate_rmsd_bond.auth_comp_id_1 TRP _pdbx_validate_rmsd_bond.auth_seq_id_1 74 _pdbx_validate_rmsd_bond.PDB_ins_code_1 ? _pdbx_validate_rmsd_bond.label_alt_id_1 ? _pdbx_validate_rmsd_bond.auth_atom_id_2 CD2 _pdbx_validate_rmsd_bond.auth_asym_id_2 A _pdbx_validate_rmsd_bond.auth_comp_id_2 TRP _pdbx_validate_rmsd_bond.auth_seq_id_2 74 _pdbx_validate_rmsd_bond.PDB_ins_code_2 ? _pdbx_validate_rmsd_bond.label_alt_id_2 ? _pdbx_validate_rmsd_bond.bond_value 1.483 _pdbx_validate_rmsd_bond.bond_target_value 1.409 _pdbx_validate_rmsd_bond.bond_deviation 0.074 _pdbx_validate_rmsd_bond.bond_standard_deviation 0.012 _pdbx_validate_rmsd_bond.linker_flag N # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 GLN A 72 ? ? -162.46 119.62 2 1 ASN A 110 ? ? -66.34 3.55 3 1 ASP A 136 ? ? -13.49 -96.66 4 1 GLU A 138 ? ? -116.16 69.94 5 1 ASN A 168 ? ? 56.17 8.44 6 1 ILE A 172 ? ? -23.21 -62.99 7 1 ASN B 51 ? ? -130.83 -43.35 # _pdbx_validate_peptide_omega.id 1 _pdbx_validate_peptide_omega.PDB_model_num 1 _pdbx_validate_peptide_omega.auth_comp_id_1 SER _pdbx_validate_peptide_omega.auth_asym_id_1 A _pdbx_validate_peptide_omega.auth_seq_id_1 135 _pdbx_validate_peptide_omega.PDB_ins_code_1 ? _pdbx_validate_peptide_omega.label_alt_id_1 ? _pdbx_validate_peptide_omega.auth_comp_id_2 ASP _pdbx_validate_peptide_omega.auth_asym_id_2 A _pdbx_validate_peptide_omega.auth_seq_id_2 136 _pdbx_validate_peptide_omega.PDB_ins_code_2 ? _pdbx_validate_peptide_omega.label_alt_id_2 ? _pdbx_validate_peptide_omega.omega 147.11 # loop_ _pdbx_unobs_or_zero_occ_atoms.id _pdbx_unobs_or_zero_occ_atoms.PDB_model_num _pdbx_unobs_or_zero_occ_atoms.polymer_flag _pdbx_unobs_or_zero_occ_atoms.occupancy_flag _pdbx_unobs_or_zero_occ_atoms.auth_asym_id _pdbx_unobs_or_zero_occ_atoms.auth_comp_id _pdbx_unobs_or_zero_occ_atoms.auth_seq_id _pdbx_unobs_or_zero_occ_atoms.PDB_ins_code _pdbx_unobs_or_zero_occ_atoms.auth_atom_id _pdbx_unobs_or_zero_occ_atoms.label_alt_id _pdbx_unobs_or_zero_occ_atoms.label_asym_id _pdbx_unobs_or_zero_occ_atoms.label_comp_id _pdbx_unobs_or_zero_occ_atoms.label_seq_id _pdbx_unobs_or_zero_occ_atoms.label_atom_id 1 1 Y 1 A GLU 105 ? CG ? A GLU 88 CG 2 1 Y 1 A GLU 105 ? CD ? A GLU 88 CD 3 1 Y 1 A GLU 105 ? OE1 ? A GLU 88 OE1 4 1 Y 1 A GLU 105 ? OE2 ? A GLU 88 OE2 5 1 Y 1 A PHE 108 ? CG ? A PHE 91 CG 6 1 Y 1 A PHE 108 ? CD1 ? A PHE 91 CD1 7 1 Y 1 A PHE 108 ? CD2 ? A PHE 91 CD2 8 1 Y 1 A PHE 108 ? CE1 ? A PHE 91 CE1 9 1 Y 1 A PHE 108 ? CE2 ? A PHE 91 CE2 10 1 Y 1 A PHE 108 ? CZ ? A PHE 91 CZ 11 1 Y 1 B SER 50 ? OG ? B SER 1 OG 12 1 Y 1 C SER 50 ? OG ? C SER 1 OG # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A SER 18 ? A SER 1 2 1 Y 1 A GLY 66 ? A GLY 49 3 1 Y 1 A LYS 67 ? A LYS 50 4 1 Y 1 A LYS 68 ? A LYS 51 5 1 Y 1 B ASP 141 ? B ASP 92 6 1 Y 1 B THR 142 ? B THR 93 7 1 Y 1 C ASP 141 ? C ASP 92 8 1 Y 1 C THR 142 ? C THR 93 # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal ALA N N N N 1 ALA CA C N S 2 ALA C C N N 3 ALA O O N N 4 ALA CB C N N 5 ALA OXT O N N 6 ALA H H N N 7 ALA H2 H N N 8 ALA HA H N N 9 ALA HB1 H N N 10 ALA HB2 H N N 11 ALA HB3 H N N 12 ALA HXT H N N 13 ARG N N N N 14 ARG CA C N S 15 ARG C C N N 16 ARG O O N N 17 ARG CB C N N 18 ARG CG C N N 19 ARG CD C N N 20 ARG NE N N N 21 ARG CZ C N N 22 ARG NH1 N N N 23 ARG NH2 N N N 24 ARG OXT O N N 25 ARG H H N N 26 ARG H2 H N N 27 ARG HA H N N 28 ARG HB2 H N N 29 ARG HB3 H N N 30 ARG HG2 H N N 31 ARG HG3 H N N 32 ARG HD2 H N N 33 ARG HD3 H N N 34 ARG HE H N N 35 ARG HH11 H N N 36 ARG HH12 H N N 37 ARG HH21 H N N 38 ARG HH22 H N N 39 ARG HXT H N N 40 ASN N N N N 41 ASN CA C N S 42 ASN C C N N 43 ASN O O N N 44 ASN CB C N N 45 ASN CG C N N 46 ASN OD1 O N N 47 ASN ND2 N N N 48 ASN OXT O N N 49 ASN H H N N 50 ASN H2 H N N 51 ASN HA H N N 52 ASN HB2 H N N 53 ASN HB3 H N N 54 ASN HD21 H N N 55 ASN HD22 H N N 56 ASN HXT H N N 57 ASP N N N N 58 ASP CA C N S 59 ASP C C N N 60 ASP O O N N 61 ASP CB C N N 62 ASP CG C N N 63 ASP OD1 O N N 64 ASP OD2 O N N 65 ASP OXT O N N 66 ASP H H N N 67 ASP H2 H N N 68 ASP HA H N N 69 ASP HB2 H N N 70 ASP HB3 H N N 71 ASP HD2 H N N 72 ASP HXT H N N 73 CYS N N N N 74 CYS CA C N R 75 CYS C C N N 76 CYS O O N N 77 CYS CB C N N 78 CYS SG S N N 79 CYS OXT O N N 80 CYS H H N N 81 CYS H2 H N N 82 CYS HA H N N 83 CYS HB2 H N N 84 CYS HB3 H N N 85 CYS HG H N N 86 CYS HXT H N N 87 GDP PB P N N 88 GDP O1B O N N 89 GDP O2B O N N 90 GDP O3B O N N 91 GDP O3A O N N 92 GDP PA P N N 93 GDP O1A O N N 94 GDP O2A O N N 95 GDP "O5'" O N N 96 GDP "C5'" C N N 97 GDP "C4'" C N R 98 GDP "O4'" O N N 99 GDP "C3'" C N S 100 GDP "O3'" O N N 101 GDP "C2'" C N R 102 GDP "O2'" O N N 103 GDP "C1'" C N R 104 GDP N9 N Y N 105 GDP C8 C Y N 106 GDP N7 N Y N 107 GDP C5 C Y N 108 GDP C6 C N N 109 GDP O6 O N N 110 GDP N1 N N N 111 GDP C2 C N N 112 GDP N2 N N N 113 GDP N3 N N N 114 GDP C4 C Y N 115 GDP HOB2 H N N 116 GDP HOB3 H N N 117 GDP HOA2 H N N 118 GDP "H5'" H N N 119 GDP "H5''" H N N 120 GDP "H4'" H N N 121 GDP "H3'" H N N 122 GDP "HO3'" H N N 123 GDP "H2'" H N N 124 GDP "HO2'" H N N 125 GDP "H1'" H N N 126 GDP H8 H N N 127 GDP HN1 H N N 128 GDP HN21 H N N 129 GDP HN22 H N N 130 GLN N N N N 131 GLN CA C N S 132 GLN C C N N 133 GLN O O N N 134 GLN CB C N N 135 GLN CG C N N 136 GLN CD C N N 137 GLN OE1 O N N 138 GLN NE2 N N N 139 GLN OXT O N N 140 GLN H H N N 141 GLN H2 H N N 142 GLN HA H N N 143 GLN HB2 H N N 144 GLN HB3 H N N 145 GLN HG2 H N N 146 GLN HG3 H N N 147 GLN HE21 H N N 148 GLN HE22 H N N 149 GLN HXT H N N 150 GLU N N N N 151 GLU CA C N S 152 GLU C C N N 153 GLU O O N N 154 GLU CB C N N 155 GLU CG C N N 156 GLU CD C N N 157 GLU OE1 O N N 158 GLU OE2 O N N 159 GLU OXT O N N 160 GLU H H N N 161 GLU H2 H N N 162 GLU HA H N N 163 GLU HB2 H N N 164 GLU HB3 H N N 165 GLU HG2 H N N 166 GLU HG3 H N N 167 GLU HE2 H N N 168 GLU HXT H N N 169 GLY N N N N 170 GLY CA C N N 171 GLY C C N N 172 GLY O O N N 173 GLY OXT O N N 174 GLY H H N N 175 GLY H2 H N N 176 GLY HA2 H N N 177 GLY HA3 H N N 178 GLY HXT H N N 179 HIS N N N N 180 HIS CA C N S 181 HIS C C N N 182 HIS O O N N 183 HIS CB C N N 184 HIS CG C Y N 185 HIS ND1 N Y N 186 HIS CD2 C Y N 187 HIS CE1 C Y N 188 HIS NE2 N Y N 189 HIS OXT O N N 190 HIS H H N N 191 HIS H2 H N N 192 HIS HA H N N 193 HIS HB2 H N N 194 HIS HB3 H N N 195 HIS HD1 H N N 196 HIS HD2 H N N 197 HIS HE1 H N N 198 HIS HE2 H N N 199 HIS HXT H N N 200 HOH O O N N 201 HOH H1 H N N 202 HOH H2 H N N 203 ILE N N N N 204 ILE CA C N S 205 ILE C C N N 206 ILE O O N N 207 ILE CB C N S 208 ILE CG1 C N N 209 ILE CG2 C N N 210 ILE CD1 C N N 211 ILE OXT O N N 212 ILE H H N N 213 ILE H2 H N N 214 ILE HA H N N 215 ILE HB H N N 216 ILE HG12 H N N 217 ILE HG13 H N N 218 ILE HG21 H N N 219 ILE HG22 H N N 220 ILE HG23 H N N 221 ILE HD11 H N N 222 ILE HD12 H N N 223 ILE HD13 H N N 224 ILE HXT H N N 225 LEU N N N N 226 LEU CA C N S 227 LEU C C N N 228 LEU O O N N 229 LEU CB C N N 230 LEU CG C N N 231 LEU CD1 C N N 232 LEU CD2 C N N 233 LEU OXT O N N 234 LEU H H N N 235 LEU H2 H N N 236 LEU HA H N N 237 LEU HB2 H N N 238 LEU HB3 H N N 239 LEU HG H N N 240 LEU HD11 H N N 241 LEU HD12 H N N 242 LEU HD13 H N N 243 LEU HD21 H N N 244 LEU HD22 H N N 245 LEU HD23 H N N 246 LEU HXT H N N 247 LYS N N N N 248 LYS CA C N S 249 LYS C C N N 250 LYS O O N N 251 LYS CB C N N 252 LYS CG C N N 253 LYS CD C N N 254 LYS CE C N N 255 LYS NZ N N N 256 LYS OXT O N N 257 LYS H H N N 258 LYS H2 H N N 259 LYS HA H N N 260 LYS HB2 H N N 261 LYS HB3 H N N 262 LYS HG2 H N N 263 LYS HG3 H N N 264 LYS HD2 H N N 265 LYS HD3 H N N 266 LYS HE2 H N N 267 LYS HE3 H N N 268 LYS HZ1 H N N 269 LYS HZ2 H N N 270 LYS HZ3 H N N 271 LYS HXT H N N 272 MET N N N N 273 MET CA C N S 274 MET C C N N 275 MET O O N N 276 MET CB C N N 277 MET CG C N N 278 MET SD S N N 279 MET CE C N N 280 MET OXT O N N 281 MET H H N N 282 MET H2 H N N 283 MET HA H N N 284 MET HB2 H N N 285 MET HB3 H N N 286 MET HG2 H N N 287 MET HG3 H N N 288 MET HE1 H N N 289 MET HE2 H N N 290 MET HE3 H N N 291 MET HXT H N N 292 PHE N N N N 293 PHE CA C N S 294 PHE C C N N 295 PHE O O N N 296 PHE CB C N N 297 PHE CG C Y N 298 PHE CD1 C Y N 299 PHE CD2 C Y N 300 PHE CE1 C Y N 301 PHE CE2 C Y N 302 PHE CZ C Y N 303 PHE OXT O N N 304 PHE H H N N 305 PHE H2 H N N 306 PHE HA H N N 307 PHE HB2 H N N 308 PHE HB3 H N N 309 PHE HD1 H N N 310 PHE HD2 H N N 311 PHE HE1 H N N 312 PHE HE2 H N N 313 PHE HZ H N N 314 PHE HXT H N N 315 PRO N N N N 316 PRO CA C N S 317 PRO C C N N 318 PRO O O N N 319 PRO CB C N N 320 PRO CG C N N 321 PRO CD C N N 322 PRO OXT O N N 323 PRO H H N N 324 PRO HA H N N 325 PRO HB2 H N N 326 PRO HB3 H N N 327 PRO HG2 H N N 328 PRO HG3 H N N 329 PRO HD2 H N N 330 PRO HD3 H N N 331 PRO HXT H N N 332 SER N N N N 333 SER CA C N S 334 SER C C N N 335 SER O O N N 336 SER CB C N N 337 SER OG O N N 338 SER OXT O N N 339 SER H H N N 340 SER H2 H N N 341 SER HA H N N 342 SER HB2 H N N 343 SER HB3 H N N 344 SER HG H N N 345 SER HXT H N N 346 THR N N N N 347 THR CA C N S 348 THR C C N N 349 THR O O N N 350 THR CB C N R 351 THR OG1 O N N 352 THR CG2 C N N 353 THR OXT O N N 354 THR H H N N 355 THR H2 H N N 356 THR HA H N N 357 THR HB H N N 358 THR HG1 H N N 359 THR HG21 H N N 360 THR HG22 H N N 361 THR HG23 H N N 362 THR HXT H N N 363 TRP N N N N 364 TRP CA C N S 365 TRP C C N N 366 TRP O O N N 367 TRP CB C N N 368 TRP CG C Y N 369 TRP CD1 C Y N 370 TRP CD2 C Y N 371 TRP NE1 N Y N 372 TRP CE2 C Y N 373 TRP CE3 C Y N 374 TRP CZ2 C Y N 375 TRP CZ3 C Y N 376 TRP CH2 C Y N 377 TRP OXT O N N 378 TRP H H N N 379 TRP H2 H N N 380 TRP HA H N N 381 TRP HB2 H N N 382 TRP HB3 H N N 383 TRP HD1 H N N 384 TRP HE1 H N N 385 TRP HE3 H N N 386 TRP HZ2 H N N 387 TRP HZ3 H N N 388 TRP HH2 H N N 389 TRP HXT H N N 390 TYR N N N N 391 TYR CA C N S 392 TYR C C N N 393 TYR O O N N 394 TYR CB C N N 395 TYR CG C Y N 396 TYR CD1 C Y N 397 TYR CD2 C Y N 398 TYR CE1 C Y N 399 TYR CE2 C Y N 400 TYR CZ C Y N 401 TYR OH O N N 402 TYR OXT O N N 403 TYR H H N N 404 TYR H2 H N N 405 TYR HA H N N 406 TYR HB2 H N N 407 TYR HB3 H N N 408 TYR HD1 H N N 409 TYR HD2 H N N 410 TYR HE1 H N N 411 TYR HE2 H N N 412 TYR HH H N N 413 TYR HXT H N N 414 VAL N N N N 415 VAL CA C N S 416 VAL C C N N 417 VAL O O N N 418 VAL CB C N N 419 VAL CG1 C N N 420 VAL CG2 C N N 421 VAL OXT O N N 422 VAL H H N N 423 VAL H2 H N N 424 VAL HA H N N 425 VAL HB H N N 426 VAL HG11 H N N 427 VAL HG12 H N N 428 VAL HG13 H N N 429 VAL HG21 H N N 430 VAL HG22 H N N 431 VAL HG23 H N N 432 VAL HXT H N N 433 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal ALA N CA sing N N 1 ALA N H sing N N 2 ALA N H2 sing N N 3 ALA CA C sing N N 4 ALA CA CB sing N N 5 ALA CA HA sing N N 6 ALA C O doub N N 7 ALA C OXT sing N N 8 ALA CB HB1 sing N N 9 ALA CB HB2 sing N N 10 ALA CB HB3 sing N N 11 ALA OXT HXT sing N N 12 ARG N CA sing N N 13 ARG N H sing N N 14 ARG N H2 sing N N 15 ARG CA C sing N N 16 ARG CA CB sing N N 17 ARG CA HA sing N N 18 ARG C O doub N N 19 ARG C OXT sing N N 20 ARG CB CG sing N N 21 ARG CB HB2 sing N N 22 ARG CB HB3 sing N N 23 ARG CG CD sing N N 24 ARG CG HG2 sing N N 25 ARG CG HG3 sing N N 26 ARG CD NE sing N N 27 ARG CD HD2 sing N N 28 ARG CD HD3 sing N N 29 ARG NE CZ sing N N 30 ARG NE HE sing N N 31 ARG CZ NH1 sing N N 32 ARG CZ NH2 doub N N 33 ARG NH1 HH11 sing N N 34 ARG NH1 HH12 sing N N 35 ARG NH2 HH21 sing N N 36 ARG NH2 HH22 sing N N 37 ARG OXT HXT sing N N 38 ASN N CA sing N N 39 ASN N H sing N N 40 ASN N H2 sing N N 41 ASN CA C sing N N 42 ASN CA CB sing N N 43 ASN CA HA sing N N 44 ASN C O doub N N 45 ASN C OXT sing N N 46 ASN CB CG sing N N 47 ASN CB HB2 sing N N 48 ASN CB HB3 sing N N 49 ASN CG OD1 doub N N 50 ASN CG ND2 sing N N 51 ASN ND2 HD21 sing N N 52 ASN ND2 HD22 sing N N 53 ASN OXT HXT sing N N 54 ASP N CA sing N N 55 ASP N H sing N N 56 ASP N H2 sing N N 57 ASP CA C sing N N 58 ASP CA CB sing N N 59 ASP CA HA sing N N 60 ASP C O doub N N 61 ASP C OXT sing N N 62 ASP CB CG sing N N 63 ASP CB HB2 sing N N 64 ASP CB HB3 sing N N 65 ASP CG OD1 doub N N 66 ASP CG OD2 sing N N 67 ASP OD2 HD2 sing N N 68 ASP OXT HXT sing N N 69 CYS N CA sing N N 70 CYS N H sing N N 71 CYS N H2 sing N N 72 CYS CA C sing N N 73 CYS CA CB sing N N 74 CYS CA HA sing N N 75 CYS C O doub N N 76 CYS C OXT sing N N 77 CYS CB SG sing N N 78 CYS CB HB2 sing N N 79 CYS CB HB3 sing N N 80 CYS SG HG sing N N 81 CYS OXT HXT sing N N 82 GDP PB O1B doub N N 83 GDP PB O2B sing N N 84 GDP PB O3B sing N N 85 GDP PB O3A sing N N 86 GDP O2B HOB2 sing N N 87 GDP O3B HOB3 sing N N 88 GDP O3A PA sing N N 89 GDP PA O1A doub N N 90 GDP PA O2A sing N N 91 GDP PA "O5'" sing N N 92 GDP O2A HOA2 sing N N 93 GDP "O5'" "C5'" sing N N 94 GDP "C5'" "C4'" sing N N 95 GDP "C5'" "H5'" sing N N 96 GDP "C5'" "H5''" sing N N 97 GDP "C4'" "O4'" sing N N 98 GDP "C4'" "C3'" sing N N 99 GDP "C4'" "H4'" sing N N 100 GDP "O4'" "C1'" sing N N 101 GDP "C3'" "O3'" sing N N 102 GDP "C3'" "C2'" sing N N 103 GDP "C3'" "H3'" sing N N 104 GDP "O3'" "HO3'" sing N N 105 GDP "C2'" "O2'" sing N N 106 GDP "C2'" "C1'" sing N N 107 GDP "C2'" "H2'" sing N N 108 GDP "O2'" "HO2'" sing N N 109 GDP "C1'" N9 sing N N 110 GDP "C1'" "H1'" sing N N 111 GDP N9 C8 sing Y N 112 GDP N9 C4 sing Y N 113 GDP C8 N7 doub Y N 114 GDP C8 H8 sing N N 115 GDP N7 C5 sing Y N 116 GDP C5 C6 sing N N 117 GDP C5 C4 doub Y N 118 GDP C6 O6 doub N N 119 GDP C6 N1 sing N N 120 GDP N1 C2 sing N N 121 GDP N1 HN1 sing N N 122 GDP C2 N2 sing N N 123 GDP C2 N3 doub N N 124 GDP N2 HN21 sing N N 125 GDP N2 HN22 sing N N 126 GDP N3 C4 sing N N 127 GLN N CA sing N N 128 GLN N H sing N N 129 GLN N H2 sing N N 130 GLN CA C sing N N 131 GLN CA CB sing N N 132 GLN CA HA sing N N 133 GLN C O doub N N 134 GLN C OXT sing N N 135 GLN CB CG sing N N 136 GLN CB HB2 sing N N 137 GLN CB HB3 sing N N 138 GLN CG CD sing N N 139 GLN CG HG2 sing N N 140 GLN CG HG3 sing N N 141 GLN CD OE1 doub N N 142 GLN CD NE2 sing N N 143 GLN NE2 HE21 sing N N 144 GLN NE2 HE22 sing N N 145 GLN OXT HXT sing N N 146 GLU N CA sing N N 147 GLU N H sing N N 148 GLU N H2 sing N N 149 GLU CA C sing N N 150 GLU CA CB sing N N 151 GLU CA HA sing N N 152 GLU C O doub N N 153 GLU C OXT sing N N 154 GLU CB CG sing N N 155 GLU CB HB2 sing N N 156 GLU CB HB3 sing N N 157 GLU CG CD sing N N 158 GLU CG HG2 sing N N 159 GLU CG HG3 sing N N 160 GLU CD OE1 doub N N 161 GLU CD OE2 sing N N 162 GLU OE2 HE2 sing N N 163 GLU OXT HXT sing N N 164 GLY N CA sing N N 165 GLY N H sing N N 166 GLY N H2 sing N N 167 GLY CA C sing N N 168 GLY CA HA2 sing N N 169 GLY CA HA3 sing N N 170 GLY C O doub N N 171 GLY C OXT sing N N 172 GLY OXT HXT sing N N 173 HIS N CA sing N N 174 HIS N H sing N N 175 HIS N H2 sing N N 176 HIS CA C sing N N 177 HIS CA CB sing N N 178 HIS CA HA sing N N 179 HIS C O doub N N 180 HIS C OXT sing N N 181 HIS CB CG sing N N 182 HIS CB HB2 sing N N 183 HIS CB HB3 sing N N 184 HIS CG ND1 sing Y N 185 HIS CG CD2 doub Y N 186 HIS ND1 CE1 doub Y N 187 HIS ND1 HD1 sing N N 188 HIS CD2 NE2 sing Y N 189 HIS CD2 HD2 sing N N 190 HIS CE1 NE2 sing Y N 191 HIS CE1 HE1 sing N N 192 HIS NE2 HE2 sing N N 193 HIS OXT HXT sing N N 194 HOH O H1 sing N N 195 HOH O H2 sing N N 196 ILE N CA sing N N 197 ILE N H sing N N 198 ILE N H2 sing N N 199 ILE CA C sing N N 200 ILE CA CB sing N N 201 ILE CA HA sing N N 202 ILE C O doub N N 203 ILE C OXT sing N N 204 ILE CB CG1 sing N N 205 ILE CB CG2 sing N N 206 ILE CB HB sing N N 207 ILE CG1 CD1 sing N N 208 ILE CG1 HG12 sing N N 209 ILE CG1 HG13 sing N N 210 ILE CG2 HG21 sing N N 211 ILE CG2 HG22 sing N N 212 ILE CG2 HG23 sing N N 213 ILE CD1 HD11 sing N N 214 ILE CD1 HD12 sing N N 215 ILE CD1 HD13 sing N N 216 ILE OXT HXT sing N N 217 LEU N CA sing N N 218 LEU N H sing N N 219 LEU N H2 sing N N 220 LEU CA C sing N N 221 LEU CA CB sing N N 222 LEU CA HA sing N N 223 LEU C O doub N N 224 LEU C OXT sing N N 225 LEU CB CG sing N N 226 LEU CB HB2 sing N N 227 LEU CB HB3 sing N N 228 LEU CG CD1 sing N N 229 LEU CG CD2 sing N N 230 LEU CG HG sing N N 231 LEU CD1 HD11 sing N N 232 LEU CD1 HD12 sing N N 233 LEU CD1 HD13 sing N N 234 LEU CD2 HD21 sing N N 235 LEU CD2 HD22 sing N N 236 LEU CD2 HD23 sing N N 237 LEU OXT HXT sing N N 238 LYS N CA sing N N 239 LYS N H sing N N 240 LYS N H2 sing N N 241 LYS CA C sing N N 242 LYS CA CB sing N N 243 LYS CA HA sing N N 244 LYS C O doub N N 245 LYS C OXT sing N N 246 LYS CB CG sing N N 247 LYS CB HB2 sing N N 248 LYS CB HB3 sing N N 249 LYS CG CD sing N N 250 LYS CG HG2 sing N N 251 LYS CG HG3 sing N N 252 LYS CD CE sing N N 253 LYS CD HD2 sing N N 254 LYS CD HD3 sing N N 255 LYS CE NZ sing N N 256 LYS CE HE2 sing N N 257 LYS CE HE3 sing N N 258 LYS NZ HZ1 sing N N 259 LYS NZ HZ2 sing N N 260 LYS NZ HZ3 sing N N 261 LYS OXT HXT sing N N 262 MET N CA sing N N 263 MET N H sing N N 264 MET N H2 sing N N 265 MET CA C sing N N 266 MET CA CB sing N N 267 MET CA HA sing N N 268 MET C O doub N N 269 MET C OXT sing N N 270 MET CB CG sing N N 271 MET CB HB2 sing N N 272 MET CB HB3 sing N N 273 MET CG SD sing N N 274 MET CG HG2 sing N N 275 MET CG HG3 sing N N 276 MET SD CE sing N N 277 MET CE HE1 sing N N 278 MET CE HE2 sing N N 279 MET CE HE3 sing N N 280 MET OXT HXT sing N N 281 PHE N CA sing N N 282 PHE N H sing N N 283 PHE N H2 sing N N 284 PHE CA C sing N N 285 PHE CA CB sing N N 286 PHE CA HA sing N N 287 PHE C O doub N N 288 PHE C OXT sing N N 289 PHE CB CG sing N N 290 PHE CB HB2 sing N N 291 PHE CB HB3 sing N N 292 PHE CG CD1 doub Y N 293 PHE CG CD2 sing Y N 294 PHE CD1 CE1 sing Y N 295 PHE CD1 HD1 sing N N 296 PHE CD2 CE2 doub Y N 297 PHE CD2 HD2 sing N N 298 PHE CE1 CZ doub Y N 299 PHE CE1 HE1 sing N N 300 PHE CE2 CZ sing Y N 301 PHE CE2 HE2 sing N N 302 PHE CZ HZ sing N N 303 PHE OXT HXT sing N N 304 PRO N CA sing N N 305 PRO N CD sing N N 306 PRO N H sing N N 307 PRO CA C sing N N 308 PRO CA CB sing N N 309 PRO CA HA sing N N 310 PRO C O doub N N 311 PRO C OXT sing N N 312 PRO CB CG sing N N 313 PRO CB HB2 sing N N 314 PRO CB HB3 sing N N 315 PRO CG CD sing N N 316 PRO CG HG2 sing N N 317 PRO CG HG3 sing N N 318 PRO CD HD2 sing N N 319 PRO CD HD3 sing N N 320 PRO OXT HXT sing N N 321 SER N CA sing N N 322 SER N H sing N N 323 SER N H2 sing N N 324 SER CA C sing N N 325 SER CA CB sing N N 326 SER CA HA sing N N 327 SER C O doub N N 328 SER C OXT sing N N 329 SER CB OG sing N N 330 SER CB HB2 sing N N 331 SER CB HB3 sing N N 332 SER OG HG sing N N 333 SER OXT HXT sing N N 334 THR N CA sing N N 335 THR N H sing N N 336 THR N H2 sing N N 337 THR CA C sing N N 338 THR CA CB sing N N 339 THR CA HA sing N N 340 THR C O doub N N 341 THR C OXT sing N N 342 THR CB OG1 sing N N 343 THR CB CG2 sing N N 344 THR CB HB sing N N 345 THR OG1 HG1 sing N N 346 THR CG2 HG21 sing N N 347 THR CG2 HG22 sing N N 348 THR CG2 HG23 sing N N 349 THR OXT HXT sing N N 350 TRP N CA sing N N 351 TRP N H sing N N 352 TRP N H2 sing N N 353 TRP CA C sing N N 354 TRP CA CB sing N N 355 TRP CA HA sing N N 356 TRP C O doub N N 357 TRP C OXT sing N N 358 TRP CB CG sing N N 359 TRP CB HB2 sing N N 360 TRP CB HB3 sing N N 361 TRP CG CD1 doub Y N 362 TRP CG CD2 sing Y N 363 TRP CD1 NE1 sing Y N 364 TRP CD1 HD1 sing N N 365 TRP CD2 CE2 doub Y N 366 TRP CD2 CE3 sing Y N 367 TRP NE1 CE2 sing Y N 368 TRP NE1 HE1 sing N N 369 TRP CE2 CZ2 sing Y N 370 TRP CE3 CZ3 doub Y N 371 TRP CE3 HE3 sing N N 372 TRP CZ2 CH2 doub Y N 373 TRP CZ2 HZ2 sing N N 374 TRP CZ3 CH2 sing Y N 375 TRP CZ3 HZ3 sing N N 376 TRP CH2 HH2 sing N N 377 TRP OXT HXT sing N N 378 TYR N CA sing N N 379 TYR N H sing N N 380 TYR N H2 sing N N 381 TYR CA C sing N N 382 TYR CA CB sing N N 383 TYR CA HA sing N N 384 TYR C O doub N N 385 TYR C OXT sing N N 386 TYR CB CG sing N N 387 TYR CB HB2 sing N N 388 TYR CB HB3 sing N N 389 TYR CG CD1 doub Y N 390 TYR CG CD2 sing Y N 391 TYR CD1 CE1 sing Y N 392 TYR CD1 HD1 sing N N 393 TYR CD2 CE2 doub Y N 394 TYR CD2 HD2 sing N N 395 TYR CE1 CZ doub Y N 396 TYR CE1 HE1 sing N N 397 TYR CE2 CZ sing Y N 398 TYR CE2 HE2 sing N N 399 TYR CZ OH sing N N 400 TYR OH HH sing N N 401 TYR OXT HXT sing N N 402 VAL N CA sing N N 403 VAL N H sing N N 404 VAL N H2 sing N N 405 VAL CA C sing N N 406 VAL CA CB sing N N 407 VAL CA HA sing N N 408 VAL C O doub N N 409 VAL C OXT sing N N 410 VAL CB CG1 sing N N 411 VAL CB CG2 sing N N 412 VAL CB HB sing N N 413 VAL CG1 HG11 sing N N 414 VAL CG1 HG12 sing N N 415 VAL CG1 HG13 sing N N 416 VAL CG2 HG21 sing N N 417 VAL CG2 HG22 sing N N 418 VAL CG2 HG23 sing N N 419 VAL OXT HXT sing N N 420 # _pdbx_audit_support.funding_organization 'National Institutes of Health/National Institute of General Medical Sciences (NIH/NIGMS)' _pdbx_audit_support.country 'United States' _pdbx_audit_support.grant_number 5R01GM069596 _pdbx_audit_support.ordinal 1 # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 3 "GUANOSINE-5'-DIPHOSPHATE" GDP 4 water HOH # _pdbx_initial_refinement_model.id 1 _pdbx_initial_refinement_model.entity_id_list ? _pdbx_initial_refinement_model.type 'experimental model' _pdbx_initial_refinement_model.source_name PDB _pdbx_initial_refinement_model.accession_code 2EQB _pdbx_initial_refinement_model.details ? # _pdbx_struct_assembly_auth_evidence.id 1 _pdbx_struct_assembly_auth_evidence.assembly_id 1 _pdbx_struct_assembly_auth_evidence.experimental_support 'gel filtration' _pdbx_struct_assembly_auth_evidence.details ? #