HEADER TRANSPORT PROTEIN 20-APR-15 4ZEC TITLE PBP ACCA FROM A. TUMEFACIENS C58 IN COMPLEX WITH AGROCIN 84 CAVEAT 4ZEC C84 A 601 HAS WRONG CHIRALITY AT ATOM CBH COMPND MOL_ID: 1; COMPND 2 MOLECULE: ABC TRANSPORTER, SUBSTRATE BINDING PROTEIN (AGROCINOPINES A COMPND 3 AND B); COMPND 4 CHAIN: A; COMPND 5 FRAGMENT: UNP RESIDUES 30-521; COMPND 6 SYNONYM: ACCA; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: AGROBACTERIUM FABRUM (STRAIN C58 / ATCC 33970); SOURCE 3 ORGANISM_TAXID: 176299; SOURCE 4 STRAIN: C58 / ATCC 33970; SOURCE 5 GENE: ACCA, ATU6139; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS PBP, CLASS C, TRANSPORT PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR A.EL SAHILI,S.MORERA REVDAT 4 07-FEB-24 4ZEC 1 COMPND HETNAM HETSYN REVDAT 3 10-FEB-21 4ZEC 1 CAVEAT COMPND SOURCE REMARK REVDAT 3 2 1 DBREF SEQADV SEQRES HELIX REVDAT 3 3 1 SHEET SITE ATOM REVDAT 2 09-OCT-19 4ZEC 1 REMARK REVDAT 1 19-AUG-15 4ZEC 0 JRNL AUTH A.EL SAHILI,S.Z.LI,J.LANG,C.VIRUS,S.PLANAMENTE,M.AHMAR, JRNL AUTH 2 B.G.GUIMARAES,M.AUMONT-NICAISE,A.VIGOUROUX,L.SOULERE, JRNL AUTH 3 J.READER,Y.QUENEAU,D.FAURE,S.MORERA JRNL TITL A PYRANOSE-2-PHOSPHATE MOTIF IS RESPONSIBLE FOR BOTH JRNL TITL 2 ANTIBIOTIC IMPORT AND QUORUM-SENSING REGULATION IN JRNL TITL 3 AGROBACTERIUM TUMEFACIENS. JRNL REF PLOS PATHOG. V. 11 05071 2015 JRNL REFN ESSN 1553-7374 JRNL PMID 26244338 JRNL DOI 10.1371/JOURNAL.PPAT.1005071 REMARK 2 REMARK 2 RESOLUTION. 2.15 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : BUSTER 2.10.3 (6-FEB-2020) REMARK 3 AUTHORS : BRICOGNE,BLANC,BRANDL,FLENSBURG,KELLER, REMARK 3 : PACIOREK,ROVERSI,SHARFF,SMART,VONRHEIN, REMARK 3 : WOMACK,MATTHEWS,TEN EYCK,TRONRUD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.15 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 42.06 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 97.9 REMARK 3 NUMBER OF REFLECTIONS : 26728 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.194 REMARK 3 R VALUE (WORKING SET) : 0.192 REMARK 3 FREE R VALUE : 0.239 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1337 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 51 REMARK 3 BIN RESOLUTION RANGE HIGH (ANGSTROMS) : 2.15 REMARK 3 BIN RESOLUTION RANGE LOW (ANGSTROMS) : 2.17 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 83.26 REMARK 3 REFLECTIONS IN BIN (WORKING + TEST SET) : 535 REMARK 3 BIN R VALUE (WORKING + TEST SET) : 0.3168 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 508 REMARK 3 BIN R VALUE (WORKING SET) : 0.3202 REMARK 3 BIN FREE R VALUE : 0.2508 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 5.05 REMARK 3 BIN FREE R VALUE TEST SET COUNT : NULL REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3945 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 70 REMARK 3 SOLVENT ATOMS : 225 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 36.95 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 35.10 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 10.42620 REMARK 3 B22 (A**2) : -6.51880 REMARK 3 B33 (A**2) : -3.90740 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.290 REMARK 3 DPI (BLOW EQ-10) BASED ON R VALUE (A) : 0.285 REMARK 3 DPI (BLOW EQ-9) BASED ON FREE R VALUE (A) : 0.206 REMARK 3 DPI (CRUICKSHANK) BASED ON R VALUE (A) : 0.273 REMARK 3 DPI (CRUICKSHANK) BASED ON FREE R VALUE (A) : 0.205 REMARK 3 REMARK 3 REFERENCES: BLOW, D. (2002) ACTA CRYST D58, 792-797 REMARK 3 CRUICKSHANK, D.W.J. (1999) ACTA CRYST D55, 583-601 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.929 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.901 REMARK 3 REMARK 3 NUMBER OF GEOMETRIC FUNCTION TERMS DEFINED : 15 REMARK 3 TERM COUNT WEIGHT FUNCTION. REMARK 3 BOND LENGTHS : 4122 ; 2.000 ; HARMONIC REMARK 3 BOND ANGLES : 5595 ; 2.000 ; HARMONIC REMARK 3 TORSION ANGLES : 1405 ; 2.000 ; SINUSOIDAL REMARK 3 TRIGONAL CARBON PLANES : NULL ; NULL ; NULL REMARK 3 GENERAL PLANES : 683 ; 5.000 ; HARMONIC REMARK 3 ISOTROPIC THERMAL FACTORS : 4122 ; 10.000 ; HARMONIC REMARK 3 BAD NON-BONDED CONTACTS : NULL ; NULL ; NULL REMARK 3 IMPROPER TORSIONS : NULL ; NULL ; NULL REMARK 3 PSEUDOROTATION ANGLES : NULL ; NULL ; NULL REMARK 3 CHIRAL IMPROPER TORSION : 522 ; 5.000 ; SEMIHARMONIC REMARK 3 SUM OF OCCUPANCIES : NULL ; NULL ; NULL REMARK 3 UTILITY DISTANCES : NULL ; NULL ; NULL REMARK 3 UTILITY ANGLES : NULL ; NULL ; NULL REMARK 3 UTILITY TORSION : NULL ; NULL ; NULL REMARK 3 IDEAL-DIST CONTACT TERM : 3592 ; 4.000 ; SEMIHARMONIC REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.008 REMARK 3 BOND ANGLES (DEGREES) : 1.05 REMARK 3 PEPTIDE OMEGA TORSION ANGLES (DEGREES) : 3.82 REMARK 3 OTHER TORSION ANGLES (DEGREES) : 12.01 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 1 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: { A|* } REMARK 3 ORIGIN FOR THE GROUP (A): -16.7464 -26.2935 14.3506 REMARK 3 T TENSOR REMARK 3 T11: -0.2085 T22: -0.1238 REMARK 3 T33: -0.1433 T12: 0.0187 REMARK 3 T13: -0.0133 T23: -0.0275 REMARK 3 L TENSOR REMARK 3 L11: 1.1889 L22: 0.9385 REMARK 3 L33: 0.5864 L12: 0.2414 REMARK 3 L13: -0.3112 L23: -0.1800 REMARK 3 S TENSOR REMARK 3 S11: 0.0336 S12: 0.0346 S13: 0.0232 REMARK 3 S21: 0.0650 S22: 0.0239 S23: -0.0089 REMARK 3 S31: -0.0351 S32: 0.0657 S33: -0.0575 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4ZEC COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 20-APR-15. REMARK 100 THE DEPOSITION ID IS D_1000209114. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 17-MAY-13 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 5.6 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SOLEIL REMARK 200 BEAMLINE : PROXIMA 1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.987 REMARK 200 MONOCHROMATOR : SI111 REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE, XDS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 26755 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.147 REMARK 200 RESOLUTION RANGE LOW (A) : 45.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 1.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.0 REMARK 200 DATA REDUNDANCY : 6.000 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.20000 REMARK 200 FOR THE DATA SET : 8.2400 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.15 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.28 REMARK 200 COMPLETENESS FOR SHELL (%) : 96.7 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : 1.04000 REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 4OUP REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 42.82 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.15 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 20% PEG 4K, 0.2M ACNH4, 0.1M NA REMARK 280 CITRATE PH 5.6 , VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 2 2 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -X,Y,-Z+1/2 REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 55.83500 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 55.83500 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 38.59000 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 57.08500 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 38.59000 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 57.08500 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 55.83500 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 38.59000 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 57.08500 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 55.83500 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 38.59000 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 57.08500 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1170 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 19190 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: 14.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 875 LIES ON A SPECIAL POSITION. REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER A 53 -173.49 -177.79 REMARK 500 PRO A 78 47.56 -80.80 REMARK 500 ALA A 87 -94.43 -134.03 REMARK 500 ASP A 215 -71.01 -136.75 REMARK 500 ALA A 324 147.80 -171.44 REMARK 500 ASN A 374 49.00 -109.31 REMARK 500 TRP A 414 -87.33 -119.01 REMARK 500 THR A 425 48.60 -88.83 REMARK 500 LEU A 489 -65.06 -97.28 REMARK 500 SER A 508 34.58 -80.75 REMARK 500 ASN A 517 42.96 -151.27 REMARK 500 LEU A 518 115.96 -163.87 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 919 DISTANCE = 5.87 ANGSTROMS REMARK 525 HOH A 920 DISTANCE = 6.70 ANGSTROMS REMARK 525 HOH A 921 DISTANCE = 6.78 ANGSTROMS REMARK 525 HOH A 922 DISTANCE = 6.82 ANGSTROMS REMARK 525 HOH A 923 DISTANCE = 6.91 ANGSTROMS REMARK 525 HOH A 924 DISTANCE = 7.07 ANGSTROMS REMARK 525 HOH A 925 DISTANCE = 9.02 ANGSTROMS REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue C84 A 601 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PEG A 602 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL A 603 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 604 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 605 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 606 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4ZE8 RELATED DB: PDB REMARK 900 RELATED ID: 4ZE9 RELATED DB: PDB REMARK 900 RELATED ID: 4ZEB RELATED DB: PDB REMARK 900 RELATED ID: 4RA1 RELATED DB: PDB DBREF 4ZEC A 32 521 UNP Q52012 Q52012_AGRFC 32 521 SEQRES 1 A 490 ARG ARG ALA LEU ARG LEU GLY VAL ASN GLY LEU PRO ASN SEQRES 2 A 490 SER LEU GLU PRO VAL ASN ALA ILE SER ASN VAL GLY PRO SEQRES 3 A 490 ARG ILE VAL ASN GLN ILE PHE ASP THR LEU ILE ALA ARG SEQRES 4 A 490 ASP PHE PHE ALA LYS GLY ALA PRO GLY ASN ALA ILE ASP SEQRES 5 A 490 LEU VAL PRO ALA LEU ALA GLU SER TRP GLU ARG ILE ASP SEQRES 6 A 490 GLU LYS SER VAL ARG PHE LYS LEU ARG GLN LYS VAL MET SEQRES 7 A 490 PHE HIS ASP GLY VAL GLU LEU THR ALA ASP ASP VAL ALA SEQRES 8 A 490 TYR THR PHE SER SER GLU ARG LEU TRP GLY PRO GLU ALA SEQRES 9 A 490 ILE LYS LYS ILE PRO LEU GLY LYS SER TYR SER LEU ASP SEQRES 10 A 490 PHE ASP GLU PRO VAL VAL GLU ASP LYS TYR THR VAL THR SEQRES 11 A 490 LEU ARG THR LYS THR PRO SER TYR LEU ILE GLU THR PHE SEQRES 12 A 490 VAL ALA SER TRP MET SER ARG ILE VAL PRO LYS GLU TYR SEQRES 13 A 490 TYR LYS LYS LEU GLY ALA VAL ASP PHE GLY ASN LYS PRO SEQRES 14 A 490 VAL GLY THR GLY PRO TYR LYS PHE VAL GLU PHE VAL ALA SEQRES 15 A 490 GLY ASP ARG VAL VAL LEU GLU ALA ASN ASP ALA TYR TRP SEQRES 16 A 490 GLY PRO LYS PRO THR ALA SER LYS ILE THR TYR GLN ILE SEQRES 17 A 490 VAL ALA GLU PRO ALA THR ARG VAL ALA GLY LEU ILE SER SEQRES 18 A 490 GLY GLU TYR ASP ILE ILE THR THR LEU THR PRO ASP ASP SEQRES 19 A 490 ILE GLN LEU ILE ASN SER TYR PRO ASP LEU GLU THR ARG SEQRES 20 A 490 GLY THR LEU ILE GLU ASN PHE HIS MET PHE THR PHE ASN SEQRES 21 A 490 MET ASN GLN GLU VAL PHE LYS ASP LYS LYS LEU ARG ARG SEQRES 22 A 490 ALA LEU ALA LEU ALA VAL ASN ARG PRO ILE MET VAL GLU SEQRES 23 A 490 ALA LEU TRP LYS LYS GLN ALA SER ILE PRO ALA GLY PHE SEQRES 24 A 490 ASN PHE PRO ASN TYR GLY GLU THR PHE ASP PRO LYS ARG SEQRES 25 A 490 LYS ALA MET GLU TYR ASN VAL GLU GLU ALA LYS ARG LEU SEQRES 26 A 490 VAL LYS GLU SER GLY TYR ASP GLY THR PRO ILE THR TYR SEQRES 27 A 490 HIS THR MET GLY ASN TYR TYR ALA ASN ALA MET PRO ALA SEQRES 28 A 490 LEU MET MET MET ILE GLU MET TRP LYS GLN ILE GLY VAL SEQRES 29 A 490 ASN VAL VAL MET LYS THR TYR ALA PRO GLY SER PHE PRO SEQRES 30 A 490 PRO ASP ASN GLN THR TRP MET ARG ASN TRP SER ASN GLY SEQRES 31 A 490 GLN TRP MET THR ASP ALA TYR ALA THR ILE VAL PRO GLU SEQRES 32 A 490 PHE GLY PRO ASN GLY GLN VAL GLN LYS ARG TRP GLY TRP SEQRES 33 A 490 LYS ALA PRO ALA GLU PHE ASN GLU LEU CYS GLN LYS VAL SEQRES 34 A 490 THR VAL LEU PRO ASN GLY LYS GLU ARG PHE ASP ALA TYR SEQRES 35 A 490 ASN ARG MET ARG ASP ILE PHE GLU GLU GLU ALA PRO ALA SEQRES 36 A 490 VAL ILE LEU TYR GLN PRO TYR ASP VAL TYR ALA ALA ARG SEQRES 37 A 490 LYS ASP VAL HIS TRP LYS PRO VAL SER PHE GLU MET MET SEQRES 38 A 490 GLU PHE ARG ASN ASN LEU SER PHE GLY HET C84 A 601 45 HET PEG A 602 7 HET GOL A 603 6 HET EDO A 604 4 HET EDO A 605 4 HET EDO A 606 4 HETNAM C84 [(2R,3R,4S,5S,6R)-6-(HYDROXYMETHYL)-2,4,5- HETNAM 2 C84 TRIS(OXIDANYL)OXAN-3-YL]OXY-N-[9-[(2R,3S,5R)-5-[[[(2R, HETNAM 3 C84 3S)-4-METHYL-2,3-BIS(OXIDANYL)PENTANOYL]AMINO]- HETNAM 4 C84 OXIDANYL-PHOSPHORYL]OXY-3-OXIDANYL-OXOLAN-2-YL]PURIN- HETNAM 5 C84 6-YL]PHOSPHONAMIDIC ACID HETNAM PEG DI(HYDROXYETHYL)ETHER HETNAM GOL GLYCEROL HETNAM EDO 1,2-ETHANEDIOL HETSYN C84 AGROCIN 84 (BETA-D-GLUCOPYRANOSE FORM) HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL HETSYN EDO ETHYLENE GLYCOL FORMUL 2 C84 C21 H34 N6 O16 P2 FORMUL 3 PEG C4 H10 O3 FORMUL 4 GOL C3 H8 O3 FORMUL 5 EDO 3(C2 H6 O2) FORMUL 8 HOH *225(H2 O) HELIX 1 AA1 GLY A 56 PHE A 64 1 9 HELIX 2 AA2 PHE A 73 ALA A 77 5 5 HELIX 3 AA3 THR A 117 PHE A 125 1 9 HELIX 4 AA4 GLY A 132 LYS A 138 5 7 HELIX 5 AA5 LEU A 141 SER A 146 1 6 HELIX 6 AA6 LEU A 170 SER A 177 1 8 HELIX 7 AA7 PRO A 184 LYS A 199 1 16 HELIX 8 AA8 GLU A 242 GLY A 253 1 12 HELIX 9 AA9 THR A 262 ASP A 264 5 3 HELIX 10 AB1 ASP A 265 TYR A 272 1 8 HELIX 11 AB2 GLN A 294 LYS A 298 5 5 HELIX 12 AB3 ASP A 299 ALA A 309 1 11 HELIX 13 AB4 ASN A 311 LEU A 319 1 9 HELIX 14 AB5 PHE A 332 PHE A 339 5 8 HELIX 15 AB6 ASN A 349 SER A 360 1 12 HELIX 16 AB7 ASN A 378 GLN A 392 1 15 HELIX 17 AB8 PRO A 409 THR A 413 5 5 HELIX 18 AB9 ALA A 427 GLY A 436 1 10 HELIX 19 AC1 GLY A 439 ARG A 444 1 6 HELIX 20 AC2 PRO A 450 LEU A 463 1 14 HELIX 21 AC3 GLY A 466 ALA A 484 1 19 SHEET 1 AA1 7 TYR A 206 VAL A 212 0 SHEET 2 AA1 7 ARG A 216 ALA A 221 -1 O GLU A 220 N LYS A 207 SHEET 3 AA1 7 ALA A 232 ILE A 239 -1 O ILE A 235 N LEU A 219 SHEET 4 AA1 7 ARG A 33 VAL A 39 1 N LEU A 35 O LYS A 234 SHEET 5 AA1 7 ILE A 257 LEU A 261 1 O ILE A 257 N GLY A 38 SHEET 6 AA1 7 ALA A 486 ARG A 499 -1 O ALA A 497 N ILE A 258 SHEET 7 AA1 7 ALA A 324 SER A 325 -1 N SER A 325 O GLN A 491 SHEET 1 AA2 6 LEU A 275 LEU A 281 0 SHEET 2 AA2 6 ALA A 486 ARG A 499 -1 O ASP A 494 N THR A 280 SHEET 3 AA2 6 ASN A 284 PHE A 290 -1 N PHE A 288 O VAL A 487 SHEET 4 AA2 6 MET A 415 GLY A 421 -1 O ARG A 416 N THR A 289 SHEET 5 AA2 6 ILE A 367 THR A 371 1 N THR A 368 O MET A 415 SHEET 6 AA2 6 VAL A 397 THR A 401 1 O VAL A 398 N ILE A 367 SHEET 1 AA3 2 ILE A 68 ASP A 71 0 SHEET 2 AA3 2 ASP A 83 PRO A 86 -1 O ASP A 83 N ASP A 71 SHEET 1 AA4 4 ALA A 89 ASP A 96 0 SHEET 2 AA4 4 SER A 99 LEU A 104 -1 O ARG A 101 N GLU A 93 SHEET 3 AA4 4 THR A 159 THR A 164 -1 O VAL A 160 N PHE A 102 SHEET 4 AA4 4 PHE A 149 ASP A 156 -1 N VAL A 153 O THR A 161 SHEET 1 AA5 2 VAL A 502 HIS A 503 0 SHEET 2 AA5 2 SER A 519 PHE A 520 -1 O SER A 519 N HIS A 503 CISPEP 1 TRP A 226 GLY A 227 0 6.39 CISPEP 2 SER A 252 GLY A 253 0 2.16 CISPEP 3 ALA A 429 THR A 430 0 5.06 SITE 1 AC1 20 ASN A 44 SER A 53 ASN A 54 LYS A 137 SITE 2 AC1 20 TYR A 145 TRP A 178 ASN A 284 TYR A 375 SITE 3 AC1 20 TYR A 376 PHE A 407 TRP A 418 SER A 419 SITE 4 AC1 20 ASN A 420 GLY A 421 THR A 430 GLU A 434 SITE 5 AC1 20 ARG A 444 GLU A 510 HOH A 798 HOH A 818 SITE 1 AC2 9 PRO A 167 SER A 168 TYR A 169 THR A 461 SITE 2 AC2 9 VAL A 462 LEU A 463 PRO A 464 ARG A 469 SITE 3 AC2 9 HOH A 812 SITE 1 AC3 2 ASN A 349 ARG A 355 SITE 1 AC4 4 ASN A 44 ASN A 198 PHE A 211 ALA A 213 SITE 1 AC5 1 PRO A 366 SITE 1 AC6 4 LYS A 143 SER A 144 ASN A 438 HOH A 778 CRYST1 77.180 114.170 111.670 90.00 90.00 90.00 C 2 2 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.012957 0.000000 0.000000 0.00000 SCALE2 0.000000 0.008759 0.000000 0.00000 SCALE3 0.000000 0.000000 0.008955 0.00000